run_metadata: 21448

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
21448	ERR863491	ERX943141	ERS709972	ERP010224	PRJEB9145	Transcriptome profiling protocol development	Transcriptome_profiling_protocol_development-sc-2914	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling					SAMEA3355671	SC	ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2015 04 21T14:58:32Z\|ENA LAST UPDATE:2018 03 08T23:24:54Z\|External Id:SAMEA3355671\|INSDC center name:SC\|INSDC first public:2015 04 21T14:58:32Z\|INSDC last update:2018 03 08T23:24:54Z\|INSDC status:public\|Submitter Id:spike dilution 0 1x 3 sc 1822506\|common name:zebrafish\|sample description:3 prime end enriched mRNA from morphologically normal zebrafish embryos for protocol development. A 8 base indexing sequence TTAGGCAT is bases 13 to 20 of read 1 followed by CG and polyT. 10uM 8mers used. Spike dilution of 1/10x used.\|sample name:spike dilution 0 1x 3 sc 1822506\|scientific name:Danio rerio\|strain:mixed									Illumina MiSeq paired end sequencing	SC EXP 12025 1#3	9199427	Illumina sequencing of library 9199427 constructed from sample accession ERS709972 for study accession ERP010224. This is part of an Illumina multiplexed sequencing run 12025 1. This submission includes reads tagged with the sequence TTAGGCAT.	qPCR only		RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina MiSeq		ERP010224	Illumina MiSeq paired end sequencing	ENA FIRST PUBLIC:2015 04 21\|ENA LAST UPDATE:2018 11 16	12025_1#3.cram	cram	559727840.0	1999028.0	SC RUN 12025 1#3	0:130 1:150	A:176833359;C:103868174;G:116658831;T:162329215;N:38261	130	150			176833359	103868174	116658831	162329215	38261	ERX943141	ERS709972	ERA432392	The Wellcome Trust Sanger Institute\|European Nucleotide Archive	Wellcome Sanger Institute	2	0.64315	0.53769	0.19922	0.14749	0.84467	0.88075	0.71042	0.68107	130	150	B	B	biological fallback assumption	illumina	miseq	3prime	cdna_unspecified	unknown	bulk	unknown	unknown		United Kingdom	2015-04-21	Undetermined	Embryo	Embryo Imprecise	All anatomical structures