run_metadata: 21441
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21441 | ERR863498 | ERX943148 | ERS709979 | ERP010224 | PRJEB9145 | Transcriptome profiling protocol development | Transcriptome_profiling_protocol_development-sc-2914 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling | SAMEA3355678 | SC | ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2015 04 21T14:58:32Z|ENA LAST UPDATE:2018 03 09T00:19:26Z|External Id:SAMEA3355678|INSDC center name:SC|INSDC first public:2015 04 21T14:58:32Z|INSDC last update:2018 03 09T00:19:26Z|INSDC status:public|Submitter Id:spike dilution 5x 1 sc 1822513|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal zebrafish embryos for protocol development.. A 8 base indexing sequence TAGCTTGT is bases 13 to 20 of read 1 followed by CG and polyT. 10uM 8mers used. Spike dilution of 5x used.|sample name:spike dilution 5x 1 sc 1822513|scientific name:Danio rerio|strain:mixed | Illumina MiSeq paired end sequencing | SC EXP 12025 1#10 | 9199434 | Illumina sequencing of library 9199434 constructed from sample accession ERS709979 for study accession ERP010224. This is part of an Illumina multiplexed sequencing run 12025 1. This submission includes reads tagged with the sequence TAGCTTGT. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP010224 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2015 04 21|ENA LAST UPDATE:2018 11 16 | 12025_1#10.cram | cram | 476835240.0 | 1702983.0 | SC RUN 12025 1#10 | 0:130 1:150 | A:152841008;C:89036877;G:100030474;T:134895194;N:31687 | 130 | 150 | 152841008 | 89036877 | 100030474 | 134895194 | 31687 | ERX943148 | ERS709979 | ERA432392 | The Wellcome Trust Sanger Institute|European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.64423 | 0.53089 | 0.22177 | 0.15517 | 0.84301 | 0.88061 | 0.69469 | 0.68545 | 130 | 150 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2015-04-21 | Undetermined | Embryo | Embryo Imprecise | All anatomical structures |