run_metadata: 19105
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19105 | ERR13822867 | ERX13225633 | ERS21098709 | ERP164534 | PRJEB80557 | RNAseq of Danio Rerio Photoreceptors Amacrine and Horizontal cells collected 38 48 and 58 hpf | e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed | Other | This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs during the retinal lamination. We dissected retinae from three different developmental stages corresponding to different stages in HCs lamination process and separated HCs PRs and HCs based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed converted to cDNA sequenced using the SMART SEQ2 protocol. | ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01 | retinal neurons | 48PR3 S14 R1 001.fastq.gz | 48 PR3 | organism:Danio rerio|collection date:2021 11 24|scientific name:Danio rerio|collected by:Jaakko Lehtimaki|common name:zebrafish|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|dev stage:48 hpf type:retina|geographic location country and/or sea:Portugal | Raw reads: 48 PR3 | webin reads 48 PR3 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ILLUMINA | Illumina HiSeq X | ERP164534 | Raw reads: 48 PR3 | ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01 | 48PR3_S14_R1_001.fastq.gz | fastq | 4232170464.0 | 42534853.0 | webin reads 48 PR3 | 0:99.50 | A:1195251409;C:889346003;G:917240118;T:1230272855;N:60079 | 99 | 1195251409 | 889346003 | 917240118 | 1230272855 | 60079 | ERX13225633 | ERS21098709 | ERA30879704 | Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive | Gulbenkian Institute for Molecular Medicine | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | sc | single_cell_plate | smartseq | Belgium | 2025-01-01 | Hatching | Embryo | Eye | Sensory System |