run_metadata: 19097
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19097 | ERR13835019 | ERX13237785 | ERS21098728 | ERP164534 | PRJEB80557 | RNAseq of Danio Rerio Photoreceptors Amacrine and Horizontal cells collected 38 48 and 58 hpf | e09e99a9-eabd-4a7d-8f92-2c4cf9f384ed | Other | This analysis was conducted to elucidate potential guidance of retinal horizontal cells HCs by photoreceptors PRs and/or amacrine cells ACs during the retinal lamination. We dissected retinae from three different developmental stages corresponding to different stages in HCs lamination process and separated HCs PRs and HCs based on their differential GFP and DsRed expression in the Lhx1:GFP; ptf1a:DsRed zebrafish transgenic line. Four replicates of each sample were lysed converted to cDNA sequenced using the SMART SEQ2 protocol. | ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01 | retinal neurons | 58HC2 S33 R1 001.fastq.gz | SAMEA116100648 | GIMM | ENA first public:2024 01 01|INSDC center name:GIMM|INSDC status:public|Submitter Id:58 HC2|collected by:Jaakko Lehtimaki|collection date:2021 12 02|common name:zebrafish|dev stage:58 hpf location country and/or sea:Portugal|lab host:Tg 5.5ptf1a:DsRed; Tglhx1a:EGFP|sample name:58 HC2|scientific name:Danio rerio|tissue type:retina | Raw reads: 58 HC2 | webin reads 58 HC2 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ILLUMINA | Illumina HiSeq X | ERP164534 | Raw reads: 58 HC2 | ENA FIRST PUBLIC:2025 01 01|ENA LAST UPDATE:2025 01 01 | 58HC2_S33_R1_001.fastq.gz | fastq | 3711237069.0 | 37217240.0 | webin reads 58 HC2 | 0:99.72 | A:1070592288;C:757099665;G:780689044;T:1102575310;N:280762 | 99 | 1070592288 | 757099665 | 780689044 | 1102575310 | 280762 | ERX13237785 | ERS21098728 | ERA30883748 | Gulbenkian Institute for Molecular Medicine|European Nucleotide Archive | Gulbenkian Institute for Molecular Medicine | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | sc | single_cell_plate | smartseq | Belgium | 2024-01-01 | Hatching | Embryo | Eye | Sensory System |