run_metadata: 190
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | DRR162551 | DRX153170 | DRS083231 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | muscle sample from 39 mpf zebrafish replicate1 | SAMD00152499 | sample name:m39 1|age:39 month|biological replicate:1|tissue:muscle | Illumina HiSeq 2000 paired end sequencing of SAMD00152499 | DRX153170 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152499 | 1067002000.0 | 5335010.0 | DRR162551 | 0:100 1:100 | A:278427675;C:254036661;G:255175092;T:277557906;N:1804666 | 100 | 100 | 278427675 | 254036661 | 255175092 | 277557906 | 1804666 | DRX153170 | DRS083231 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.95438 | 0.92802 | 0.05748 | 0.05502 | 0.79192 | 0.79819 | 0.52464 | 0.52682 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Muscle | Muscular System |