run_metadata: 16556
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16556 | ERR667380 | ERX622868 | ERS463321 | ERP008536 | PRJEB7614 | Screening zebrafish embryos treated with small molecules by transcriptome profiling | Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls. | SAMEA2548475 | SC | ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548475|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 9 sc 1972444|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TCGAGCGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 9 sc 1972444|scientific name:Danio rerio|strain:mixed | Illumina HiSeq 2500 paired end sequencing | SC EXP 13256 1#18 | 10517294 | Illumina sequencing of library 10517294 constructed from sample accession ERS463321 for study accession ERP008536. This is part of an Illumina multiplexed sequencing run 13256 1. This submission includes reads tagged with the sequence TCGAGCGT. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | ERP008536 | Illumina HiSeq 2500 paired end sequencing | ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16 | 13256_1#18.cram | cram | 246614290.0 | 1897033.0 | SC RUN 13256 1#18 | 0:55 1:75 | A:65847226;C:48649826;G:51891861;T:80201978;N:23399 | 55 | 75 | 65847226 | 48649826 | 51891861 | 80201978 | 23399 | ERX622868 | ERS463321 | ERA375333 | SC | Wellcome Sanger Institute | 2 | 0.12616 | 0.80609 | 0.07386 | 0.19379 | 0.96566 | 0.82942 | 0.80786 | 0.70582 | 55 | 75 | T | B | mate1 technical by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2014-11-04 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |