run_metadata: 153
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153 | DRR051061 | DRX045953 | DRS057274 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Collected from 10 adult fish by using FACS | GFP+ cells from whole brain of SAGFFLF231A;UAS:GFP transgenic zebrafish | SAMD00044989 | sample name:231A GFP plus WB|tissue type:brain|genotype:SAGFFLF231A;UAS:GFP | Illumina HiSeq 2500 paired end sequencing of SAMD00044989 | DRX045953 | 231A GFP plus WB | 1 | cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044989 | 27230654000.0 | 136153270.0 | DRR051061 | 0:101 1:99 | A:7929214734;C:5506861409;G:5563593280;T:8059057191;N:171927386 | 101 | 99 | 7929214734 | 5506861409 | 5563593280 | 8059057191 | 171927386 | DRX045953 | DRS057274 | DRA004271 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.88462 | 0.88282 | 0.26215 | 0.26067 | 0.72468 | 0.73555 | 0.48369 | 0.48285 | 101 | 99 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | smarter | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System |