run_metadata: 11401
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11401 | ERR573448 | ERX532218 | ERS431105 | ERP005516 | PRJEB6054 | Baseline expression from transcriptional profiling of zebrafish developmental stages | Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling | SAMEA2444566 | SC | ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444566|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919820|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote 1 cell stage 0 hpf. A 8 base indexing sequence TAGCTTGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919820|scientific name:Danio rerio|strain:mixed | Illumina HiSeq 2500 paired end sequencing | SC EXP 12780 2#10 | 9907556 | Illumina sequencing of library 9907556 constructed from sample accession ERS431105 for study accession ERP005516. This is part of an Illumina multiplexed sequencing run 12780 2. This submission includes reads tagged with the sequence TAGCTTGT. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | ERP005516 | Illumina HiSeq 2500 paired end sequencing | ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16 | 12780_2#10.cram | cram | 586547544.0 | 4443542.0 | SC RUN 12780 2#10 | 0:75 1:57 | A:177436547;C:103345736;G:103704110;T:190942186;N:11118965 | 75 | 57 | 177436547 | 103345736 | 103704110 | 190942186 | 11118965 | ERX532218 | ERS431105 | ERA340772 | SC | Wellcome Sanger Institute | 2 | 0.74998 | 0.0811 | 0.0405 | 0.01459 | 0.83818 | 0.9713 | 0.76069 | 0.82754 | 75 | 57 | B | T | mate2 technical by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2014-07-23 | Zygote | Embryo | Oocyte | Reproductive System |