run_metadata: 113
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113 | DRR189391 | DRX179856 | DRS200404 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post electrical shock delivery in the conditioning tank 3 | SAMD00182234 | sample name:US Tel 60 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182234 | DRX179856 | US Tel 60 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182234 | 1535884704.0 | 42663464.0 | DRR189391 | 0:36 | A:367444721;C:350978310;G:375524359;T:441859454;N:77860 | 36 | 367444721 | 350978310 | 375524359 | 441859454 | 77860 | DRX179856 | DRS200404 | DRA008861 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.88103 | 0.1788 | 0.7082 | 0.49462 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System |