run_metadata: 11154
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11154 | ERR10034051 | ERX9574455 | ERS12562166 | ERP140005 | PRJEB55122 | Danio developmental transcriptomes | ca4a518e-aaf7-42d9-9758-352aac808809 | Other | Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species. | ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08 | Larval tissue without xxx from Danio rerio | Drerio larval 4 | SAMEA110464138 | max planck institute for biology | ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464138|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE4|collected by:Marco Podobnik|collection date:2018 06 19|common name:zebrafish|dev stage:Larval|identified by:Marco Podobnik|sample name:SAMPLE4|sex:not provided|tissue type:whole body without xxx | Illumina NovaSeq 6000 paired end sequencing | ena EXPERIMENT TAB 05 08 2022 14:25:08:822 19136 | unspecified | 1 | Illumina TruSeq DNA Nano Kit | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | ERP140005 | Illumina NovaSeq 6000 paired end sequencing | ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08 | S879Nr4.1.fastq.gz S879Nr4.2.fastq.gz | fastq fastq | 8046902370.0 | 40206331.0 | ena RUN TAB 05 08 2022 14:25:08:829 19137 | 0:100.07 1:100.07 | A:2154247315;C:1901540683;G:1965167700;T:2025838764;N:107908 | 100 | 100 | 2154247315 | 1901540683 | 1965167700 | 2025838764 | 107908 | ERX9574455 | ERS12562166 | ERA16814395 | max planck institute for biology|European Nucleotide Archive | max planck institute for biology | 2 | 0.96507 | 0.96543 | 0.05345 | 0.0533 | 0.71553 | 0.72123 | 0.48553 | 0.49 | 101 | 101 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | Germany | 2022-08-05 | Larval | Larval | Trunk | Surface Structure |