run_metadata: 11088
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11088 | ERR10476835 | ERX9997178 | ERS13672503 | ERP138527 | PRJEB53713 | Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish | f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e | Other | Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4 | ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06 | star:bPAC / whole brain pooled 15 brains | star:bPAC / whole brain day13 | SAMEA111562647 | Living Systems Institute, University of Exeter | INSDC center name:Living Systems Institute University of Exeter|Submitter Id:star neg d13 4|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star neg d13 4|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain | Illumina NovaSeq 6000 paired end sequencing | ena EXPERIMENT TAB 09 11 2022 11:52:59:195 283089 | Sample 0256 109 FR NSP TR2 SL1 | 1 | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | ERP138527 | Illumina NovaSeq 6000 paired end sequencing | ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06 | 0256_109_FR_NSP_TR2_SL1_S38_L001_R1_001-pooled.fastq.gz 0256_109_FR_NSP_TR2_SL1_S38_L001_R2_001-pooled.fastq.gz | fastq fastq | 3406677396.0 | 33398798.0 | ena RUN TAB 09 11 2022 11:52:59:195 283090 | 0:51 1:51 | A:928579532;C:768636951;G:771636154;T:937786376;N:38383 | 51 | 51 | 928579532 | 768636951 | 771636154 | 937786376 | 38383 | ERX9997178 | ERS13672503 | ERA18581410 | living systems institute, university of exeter|European Nucleotide Archive | living systems institute, university of exeter|European Nucleotide Archive | B | B | biological fallback assumption | illumina | novaseq_era | full_length | poly_a | trueseq | bulk | unknown | unknown | United Kingdom | 2024-02-06 | Larval | Larval | Brain | Nervous System |