run_metadata: 108
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108 | DRR189396 | DRX179861 | DRS200427 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post exposure to the conditioning tank 2 | SAMD00182239 | sample name:Cont Tel 60 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182239 | DRX179861 | Cont Tel 60 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182239 | 6429019650.0 | 128580393.0 | DRR189396 | 0:50 | A:1570141412;C:1457539089;G:1572785681;T:1828358007;N:195461 | 50 | 1570141412 | 1457539089 | 1572785681 | 1828358007 | 195461 | DRX179861 | DRS200427 | DRA008863 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89595 | 0.16204 | 0.70743 | 0.49805 | 50 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System |