run_metadata: 10640
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10640 | ERR9269917 | ERX8812314 | ERS10998380 | ERP136288 | PRJEB51641 | CS2 UHEI DART 96 120h raw data EUT053 | S-TOXR1832 | Transcriptome Analysis | ENA FIRST PUBLIC:2024 03 15|ENA LAST UPDATE:2024 03 15 | SAMEA13395726 | University of Heidelberg | Compound:VPA|Concentration:10.0 µM|ENA first public:2024 03 15|Exposure time:48 hpf|External Id:SAMEA13395726|Gender:null|INSDC center name:University of Heidelberg|INSDC last update:2022 03 15T10:53:12Z|INSDC status:public|Submitter Id:S TOXR1832:S 48hpf VPA10 UHEI|Treatment:repeated dose|Treatment scheme:daily|broker name:EU ToxRisk DCC|cell line:null|common name:zebrafish|sample name:S TOXR1832:S 48hpf VPA10 UHEI|scientific name:Danio rerio | Illumina HiSeq 2500 sequencing | S TOXR1832:S 48hpf VPA10 UHEI e | TempO Seq library | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | Illumina HiSeq 2500 | ERP136288 | Illumina HiSeq 2500 sequencing | ENA FIRST PUBLIC:2024 03 15|ENA LAST UPDATE:2024 03 15 | S_48hpf_VPA10_UHEI.fastq.gz | fastq | 67426000.0 | 1348520.0 | S TOXR1832:S 48hpf VPA10 UHEI r | 0:50 | A:14029838;C:17712723;G:16312528;T:19361892;N:9019 | 50 | 14029838 | 17712723 | 16312528 | 19361892 | 9019 | ERX8812314 | ERS10998380 | ERA10091710 | EMBL EBI | EMBL EBI | B | usable mapping rate | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2022-03-15 | Hatching | Embryo | Cell Line | Cell Line |