run_metadata: 10204
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10204 | ERR596426 | ERX553389 | ERS462790 | ERP003932 | PRJEB4632 | Zebrafish oocyte maturation | Zebrafish_oocyte_maturation-sc-2013-09-24T12:03:04Z-2777 | Transcriptome Analysis | The data within this study has been generated to study zebrafish oocyte maturation. | SAMEA2547980 | SC | ArrayExpress Genotype:WT|ArrayExpress OrganismPart:ovaries|ArrayExpress Sex:female|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 09 09T09:35:46Z|ENA LAST UPDATE:2018 03 08T17:58:34Z|External Id:SAMEA2547980|INSDC center name:SC|INSDC first public:2014 09 09T09:35:46Z|INSDC last update:2018 03 08T17:58:34Z|INSDC status:public|Submitter Id:stI oocytes Fraction2 WT 2 sc 1971679|common name:zebrafish|sample description:Oocyte RNA fraction.|sample name:stI oocytes Fraction2 WT 2 sc 1971679|scientific name:Danio rerio|strain:AB | Illumina MiSeq paired end sequencing | SC EXP 13147 1#2 | 10347691 | Illumina sequencing of library 10347691 constructed from sample accession ERS462790 for study accession ERP003932. This is part of an Illumina multiplexed sequencing run 13147 1. This submission includes reads tagged with the sequence CGATGT. | RNA seq dUTP | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP003932 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2014 09 09|ENA LAST UPDATE:2018 11 16 | 13147_1#2.cram | cram | 714969600.0 | 2383232.0 | SC RUN 13147 1#2 | 0:150 1:150 | A:151578902;C:207835645;G:217545196;T:138009856;N:1 | 150 | 150 | 151578902 | 207835645 | 217545196 | 138009856 | 1 | ERX553389 | ERS462790 | ERA356861 | SC | Wellcome Sanger Institute | 2 | 0.97925 | 0.981 | 0.2548 | 0.25496 | 0.77447 | 0.78462 | 0.77035 | 0.76498 | 150 | 150 | B | B | biological fallback assumption | illumina | miseq | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2014-09-09 | Zygote | Embryo | Multi-tissue | Multi-system |