run_metadata: 10172
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10172 | ERR375747 | ERX348124 | ERS337050 | ERP003756 | PRJEB4464 | Zebrafish olfactory transcriptomics | Zebrafish_olfactory_transcriptomics-sc-2013-08-12T10:32:48Z-2742 | Transcriptome Analysis | The olfactory gene repertoire is largely species specific shaped by the nature and necessity of chemosensory information for survival in each species' niche. The relative expression of olfactory receptors can be quantified by RNA sequencing. We investigated the olfactory transcriptome of zebrafish because : i of its phylogenetic location in the vertebrate tree ii it has only one olfactory organ yet it has representatives of all the mammalian chemosensory receptor families iii its biology is well known iv is a commonly used model organism and it is suitable for subsequent functional analysis. | SAMEA2168446 | SC | ArrayExpress Genotype:Wildtype|ArrayExpress OrganismPart:Olfactory epithelium|ArrayExpress Sex:male|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 11 25T10:18:08Z|ENA LAST UPDATE:2018 03 08T16:38:06Z|External Id:SAMEA2168446|INSDC center name:SC|INSDC first public:2013 11 25T10:18:08Z|INSDC last update:2018 03 08T16:38:06Z|INSDC status:public|Submitter Id:ZF OE1 sc 2013 08 12T10:36:17Z 1677719|common name:zebrafish|sample description:RNA from OE|sample name:ZF OE1 sc 2013 08 12T10:36:17Z 1677719|scientific name:Danio rerio | Illumina HiSeq 2000 paired end sequencing | SC EXP 10586 2#1 | 7941066 | Illumina sequencing of library 7941066 constructed from sample accession ERS337050 for study accession ERP003756. This is part of an Illumina multiplexed sequencing run 10586 2. This submission includes reads tagged with the sequence ATCACG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP003756 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 11 25|ENA LAST UPDATE:2018 11 16 | 10586_2#1.cram | cram | 10377603200.0 | 51888016.0 | SC RUN 10586 2#1 | 0:100 1:100 | A:3021582125;C:2187474575;G:2170525378;T:2983668309;N:14352813 | 100 | 100 | 3021582125 | 2187474575 | 2170525378 | 2983668309 | 14352813 | ERX348124 | ERS337050 | ERA267455 | SC | Wellcome Sanger Institute | 2 | 0.90978 | 0.90815 | 0.15565 | 0.15454 | 0.67322 | 0.67476 | 0.52923 | 0.51842 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2013-11-25 | Undetermined | Undetermined | Brain | Nervous System |