rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 31849,SRR28735527,SRX24301508,SRS21065427,SRP502615,PRJNA1101945,Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics [RNA seq],GSE264309,Transcriptome Analysis,Calcium is involved in vision processes in retina and is implicated in various pathologies including glaucoma. Rods are protected against prolonged lowering of intracellular calcium ion concentrations by Store Operated Calcium Entry SOCE. We showed zebrafish lacking SOCE calcium sensor Stim2 had problem with vision as indicated by behavior tests staining of retina and downregulation of genes related to light perception. In this work we aimed to understand the mechanism responsible for the vision problems in stim2 zebrafish knockout. scRNA sequencing of neuronal origin cells from brains of 5 dpf larvae identified 27 clusters. Differently expressed genes were detected in ten clusters including amacrine and GABAergic retinal interneurons and GABAergic optic tectum cells. In five clusters the proportion of cells in stim2 KO fish versus control was significantly decreased including GABAergic diencephalon and optic tectum and was increased in amacrine and GABAergic retinal interneurons. Transmission Electron Microscopy in stim2 KO fish revealed decrease in width of inner plexiform layer IPL ganglion cells and their dendrites numbers what is characteristic for glaucoma. Analysis of cell density in the inner nucleus layer which includes amacrine cells among others showed a significant decrease in the number of GABAergic neurons. The area of cristae in photoreceptor mitochondria was statistically lower in stim2 KO than in control retinas. Overall design: AB and double knockout for stim2 stim2a;stim2b / zebrafish 5dpf larvae were used to isolate the total RNA from their eyes. The experimental setup involved 3 replicates per each condition stim2 KO vs control consisting of 35 eyes per repetition.,parent bioproject:PRJNA1101942,pubmed:39424970,,stim2KO repllicate 3 RNASeq,GSM8215878,,source name:eye|tissue:eye|genotype:stim2a;stim2b / |age:5 dpf|geo loc name:missing|collection date:missing,stim2KO repllicate 3 RNASeq,Raw RNA seq data were converted to FASTQ format with bcl2fastq2 v2.17 Illumina and FastQC v0.11.4 was used to assess the quality of each sequencing run. We then utilized the SQuIRE pipeline45 for subsequent steps. STAR version 2.5.3a StringTie version 1.3.3b and DESeq2 version 1.16.149 were used within the SQuIRE pipeline for read alignment transcript assembly and quantification for each replicate and differential gene expression analysis respectively. Assembly: Danio rerio GRCz11 Supplementary files format and content: Tab separated files with raw reads for each sample,eye,,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer’s recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,tissue:eye|genotype:stim2a;stim2b / |age:5 dpf,GSM8215878,GSM8215878: stim2KO repllicate 3 RNASeq; Danio rerio; RNA Seq,GSM8215878 r1,GSM8215878,1,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer's recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP502615,,loader:fastq load.py,mut_rep_3_R1_001.fastq.gz mut_rep_3_R2_001.fastq.gz,fastq fastq,5198552618.0,25735409.0,GSM8215878 r1,0:101 1:101,A:1302884238;C:1298420335;G:1334893927;T:1262296331;N:57787,101,101,,,1302884238,1298420335,1334893927,1262296331,57787,SRX24301508,SRS21065427,SRA1848589,"Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS","Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS",2,0.95719,0.95856,0.05756,0.05712,0.70534,0.70851,0.42046,0.41786,101,101,B,B,biological fallback assumption,illumina,nextseq,unknown,cdna_unspecified,trueseq,sc_generic,single_cell_generic,generic-scrnaseq-only,,Poland,2024-04-18,Larval,Larval,Eye,Sensory System 31850,SRR28735528,SRX24301507,SRS21065426,SRP502615,PRJNA1101945,Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics [RNA seq],GSE264309,Transcriptome Analysis,Calcium is involved in vision processes in retina and is implicated in various pathologies including glaucoma. Rods are protected against prolonged lowering of intracellular calcium ion concentrations by Store Operated Calcium Entry SOCE. We showed zebrafish lacking SOCE calcium sensor Stim2 had problem with vision as indicated by behavior tests staining of retina and downregulation of genes related to light perception. In this work we aimed to understand the mechanism responsible for the vision problems in stim2 zebrafish knockout. scRNA sequencing of neuronal origin cells from brains of 5 dpf larvae identified 27 clusters. Differently expressed genes were detected in ten clusters including amacrine and GABAergic retinal interneurons and GABAergic optic tectum cells. In five clusters the proportion of cells in stim2 KO fish versus control was significantly decreased including GABAergic diencephalon and optic tectum and was increased in amacrine and GABAergic retinal interneurons. Transmission Electron Microscopy in stim2 KO fish revealed decrease in width of inner plexiform layer IPL ganglion cells and their dendrites numbers what is characteristic for glaucoma. Analysis of cell density in the inner nucleus layer which includes amacrine cells among others showed a significant decrease in the number of GABAergic neurons. The area of cristae in photoreceptor mitochondria was statistically lower in stim2 KO than in control retinas. Overall design: AB and double knockout for stim2 stim2a;stim2b / zebrafish 5dpf larvae were used to isolate the total RNA from their eyes. The experimental setup involved 3 replicates per each condition stim2 KO vs control consisting of 35 eyes per repetition.,parent bioproject:PRJNA1101942,pubmed:39424970,,stim2KO repllicate 2 RNASeq,GSM8215877,,source name:eye|tissue:eye|genotype:stim2a;stim2b / |age:5 dpf|geo loc name:missing|collection date:missing,stim2KO repllicate 2 RNASeq,Raw RNA seq data were converted to FASTQ format with bcl2fastq2 v2.17 Illumina and FastQC v0.11.4 was used to assess the quality of each sequencing run. We then utilized the SQuIRE pipeline45 for subsequent steps. STAR version 2.5.3a StringTie version 1.3.3b and DESeq2 version 1.16.149 were used within the SQuIRE pipeline for read alignment transcript assembly and quantification for each replicate and differential gene expression analysis respectively. Assembly: Danio rerio GRCz11 Supplementary files format and content: Tab separated files with raw reads for each sample,eye,,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer’s recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,tissue:eye|genotype:stim2a;stim2b / |age:5 dpf,GSM8215877,GSM8215877: stim2KO repllicate 2 RNASeq; Danio rerio; RNA Seq,GSM8215877 r1,GSM8215877,1,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer's recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP502615,,loader:fastq load.py,mut_rep_2_R1_001.fastq.gz mut_rep_2_R2_001.fastq.gz,fastq fastq,5641008570.0,27925785.0,GSM8215877 r1,0:101 1:101,A:1421655053;C:1399106135;G:1439454285;T:1380731092;N:62005,101,101,,,1421655053,1399106135,1439454285,1380731092,62005,SRX24301507,SRS21065426,SRA1848589,"Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS","Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS",2,0.95794,0.9601,0.05457,0.05365,0.70942,0.71151,0.42408,0.42666,101,101,B,B,biological fallback assumption,illumina,nextseq,unknown,cdna_unspecified,trueseq,sc_generic,single_cell_generic,generic-scrnaseq-only,,Poland,2024-04-18,Larval,Larval,Eye,Sensory System 31851,SRR28735529,SRX24301506,SRS21065425,SRP502615,PRJNA1101945,Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics [RNA seq],GSE264309,Transcriptome Analysis,Calcium is involved in vision processes in retina and is implicated in various pathologies including glaucoma. Rods are protected against prolonged lowering of intracellular calcium ion concentrations by Store Operated Calcium Entry SOCE. We showed zebrafish lacking SOCE calcium sensor Stim2 had problem with vision as indicated by behavior tests staining of retina and downregulation of genes related to light perception. In this work we aimed to understand the mechanism responsible for the vision problems in stim2 zebrafish knockout. scRNA sequencing of neuronal origin cells from brains of 5 dpf larvae identified 27 clusters. Differently expressed genes were detected in ten clusters including amacrine and GABAergic retinal interneurons and GABAergic optic tectum cells. In five clusters the proportion of cells in stim2 KO fish versus control was significantly decreased including GABAergic diencephalon and optic tectum and was increased in amacrine and GABAergic retinal interneurons. Transmission Electron Microscopy in stim2 KO fish revealed decrease in width of inner plexiform layer IPL ganglion cells and their dendrites numbers what is characteristic for glaucoma. Analysis of cell density in the inner nucleus layer which includes amacrine cells among others showed a significant decrease in the number of GABAergic neurons. The area of cristae in photoreceptor mitochondria was statistically lower in stim2 KO than in control retinas. Overall design: AB and double knockout for stim2 stim2a;stim2b / zebrafish 5dpf larvae were used to isolate the total RNA from their eyes. The experimental setup involved 3 replicates per each condition stim2 KO vs control consisting of 35 eyes per repetition.,parent bioproject:PRJNA1101942,pubmed:39424970,,stim2KO repllicate 1 RNASeq,GSM8215876,,source name:eye|tissue:eye|genotype:stim2a;stim2b / |age:5 dpf|geo loc name:missing|collection date:missing,stim2KO repllicate 1 RNASeq,Raw RNA seq data were converted to FASTQ format with bcl2fastq2 v2.17 Illumina and FastQC v0.11.4 was used to assess the quality of each sequencing run. We then utilized the SQuIRE pipeline45 for subsequent steps. STAR version 2.5.3a StringTie version 1.3.3b and DESeq2 version 1.16.149 were used within the SQuIRE pipeline for read alignment transcript assembly and quantification for each replicate and differential gene expression analysis respectively. Assembly: Danio rerio GRCz11 Supplementary files format and content: Tab separated files with raw reads for each sample,eye,,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer’s recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,tissue:eye|genotype:stim2a;stim2b / |age:5 dpf,GSM8215876,GSM8215876: stim2KO repllicate 1 RNASeq; Danio rerio; RNA Seq,GSM8215876 r1,GSM8215876,1,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer's recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP502615,,loader:fastq load.py,mut_rep_1_R1_001.fastq.gz mut_rep_1_R2_001.fastq.gz,fastq fastq,5147003026.0,25480213.0,GSM8215876 r1,0:101 1:101,A:1302966446;C:1274828722;G:1325578656;T:1243571921;N:57281,101,101,,,1302966446,1274828722,1325578656,1243571921,57281,SRX24301506,SRS21065425,SRA1848589,"Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS","Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS",2,0.95963,0.96036,0.05042,0.05053,0.71275,0.71725,0.41458,0.41703,101,101,B,B,biological fallback assumption,illumina,nextseq,unknown,cdna_unspecified,trueseq,sc_generic,single_cell_generic,generic-scrnaseq-only,,Poland,2024-04-18,Larval,Larval,Eye,Sensory System 31852,SRR28735530,SRX24301505,SRS21065424,SRP502615,PRJNA1101945,Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics [RNA seq],GSE264309,Transcriptome Analysis,Calcium is involved in vision processes in retina and is implicated in various pathologies including glaucoma. Rods are protected against prolonged lowering of intracellular calcium ion concentrations by Store Operated Calcium Entry SOCE. We showed zebrafish lacking SOCE calcium sensor Stim2 had problem with vision as indicated by behavior tests staining of retina and downregulation of genes related to light perception. In this work we aimed to understand the mechanism responsible for the vision problems in stim2 zebrafish knockout. scRNA sequencing of neuronal origin cells from brains of 5 dpf larvae identified 27 clusters. Differently expressed genes were detected in ten clusters including amacrine and GABAergic retinal interneurons and GABAergic optic tectum cells. In five clusters the proportion of cells in stim2 KO fish versus control was significantly decreased including GABAergic diencephalon and optic tectum and was increased in amacrine and GABAergic retinal interneurons. Transmission Electron Microscopy in stim2 KO fish revealed decrease in width of inner plexiform layer IPL ganglion cells and their dendrites numbers what is characteristic for glaucoma. Analysis of cell density in the inner nucleus layer which includes amacrine cells among others showed a significant decrease in the number of GABAergic neurons. The area of cristae in photoreceptor mitochondria was statistically lower in stim2 KO than in control retinas. Overall design: AB and double knockout for stim2 stim2a;stim2b / zebrafish 5dpf larvae were used to isolate the total RNA from their eyes. The experimental setup involved 3 replicates per each condition stim2 KO vs control consisting of 35 eyes per repetition.,parent bioproject:PRJNA1101942,pubmed:39424970,,Tg repllicate 3 RNASeq,GSM8215875,,source name:eye|tissue:eye|genotype:AB|age:5 dpf|geo loc name:missing|collection date:missing,Tg repllicate 3 RNASeq,Raw RNA seq data were converted to FASTQ format with bcl2fastq2 v2.17 Illumina and FastQC v0.11.4 was used to assess the quality of each sequencing run. We then utilized the SQuIRE pipeline45 for subsequent steps. STAR version 2.5.3a StringTie version 1.3.3b and DESeq2 version 1.16.149 were used within the SQuIRE pipeline for read alignment transcript assembly and quantification for each replicate and differential gene expression analysis respectively. Assembly: Danio rerio GRCz11 Supplementary files format and content: Tab separated files with raw reads for each sample,eye,,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer’s recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,tissue:eye|genotype:AB|age:5 dpf,GSM8215875,GSM8215875: Tg repllicate 3 RNASeq; Danio rerio; RNA Seq,GSM8215875 r1,GSM8215875,1,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer's recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP502615,,loader:fastq load.py,wt_rep_3_R1_001.fastq.gz wt_rep_3_R2_001.fastq.gz,fastq fastq,4648345422.0,23011611.0,GSM8215875 r1,0:101 1:101,A:1186641846;C:1144216110;G:1192801277;T:1124633797;N:52392,101,101,,,1186641846,1144216110,1192801277,1124633797,52392,SRX24301505,SRS21065424,SRA1848589,"Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS","Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS",2,0.9575,0.95756,0.05359,0.05311,0.69875,0.70315,0.42041,0.41054,101,101,B,B,biological fallback assumption,illumina,nextseq,unknown,cdna_unspecified,trueseq,sc_generic,single_cell_generic,generic-scrnaseq-only,,Poland,2024-04-18,Larval,Larval,Eye,Sensory System 31853,SRR28735531,SRX24301504,SRS21065423,SRP502615,PRJNA1101945,Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics [RNA seq],GSE264309,Transcriptome Analysis,Calcium is involved in vision processes in retina and is implicated in various pathologies including glaucoma. Rods are protected against prolonged lowering of intracellular calcium ion concentrations by Store Operated Calcium Entry SOCE. We showed zebrafish lacking SOCE calcium sensor Stim2 had problem with vision as indicated by behavior tests staining of retina and downregulation of genes related to light perception. In this work we aimed to understand the mechanism responsible for the vision problems in stim2 zebrafish knockout. scRNA sequencing of neuronal origin cells from brains of 5 dpf larvae identified 27 clusters. Differently expressed genes were detected in ten clusters including amacrine and GABAergic retinal interneurons and GABAergic optic tectum cells. In five clusters the proportion of cells in stim2 KO fish versus control was significantly decreased including GABAergic diencephalon and optic tectum and was increased in amacrine and GABAergic retinal interneurons. Transmission Electron Microscopy in stim2 KO fish revealed decrease in width of inner plexiform layer IPL ganglion cells and their dendrites numbers what is characteristic for glaucoma. Analysis of cell density in the inner nucleus layer which includes amacrine cells among others showed a significant decrease in the number of GABAergic neurons. The area of cristae in photoreceptor mitochondria was statistically lower in stim2 KO than in control retinas. Overall design: AB and double knockout for stim2 stim2a;stim2b / zebrafish 5dpf larvae were used to isolate the total RNA from their eyes. The experimental setup involved 3 replicates per each condition stim2 KO vs control consisting of 35 eyes per repetition.,parent bioproject:PRJNA1101942,pubmed:39424970,,Tg repllicate 2 RNASeq,GSM8215874,,source name:eye|tissue:eye|genotype:AB|age:5 dpf|geo loc name:missing|collection date:missing,Tg repllicate 2 RNASeq,Raw RNA seq data were converted to FASTQ format with bcl2fastq2 v2.17 Illumina and FastQC v0.11.4 was used to assess the quality of each sequencing run. We then utilized the SQuIRE pipeline45 for subsequent steps. STAR version 2.5.3a StringTie version 1.3.3b and DESeq2 version 1.16.149 were used within the SQuIRE pipeline for read alignment transcript assembly and quantification for each replicate and differential gene expression analysis respectively. Assembly: Danio rerio GRCz11 Supplementary files format and content: Tab separated files with raw reads for each sample,eye,,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer’s recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,tissue:eye|genotype:AB|age:5 dpf,GSM8215874,GSM8215874: Tg repllicate 2 RNASeq; Danio rerio; RNA Seq,GSM8215874 r1,GSM8215874,1,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer's recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP502615,,loader:fastq load.py,wt_rep_2_R1_001.fastq.gz wt_rep_2_R2_001.fastq.gz,fastq fastq,4769618546.0,23611973.0,GSM8215874 r1,0:101 1:101,A:1218890346;C:1171831021;G:1228410692;T:1150434539;N:51948,101,101,,,1218890346,1171831021,1228410692,1150434539,51948,SRX24301504,SRS21065423,SRA1848589,"Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS","Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS",2,0.95682,0.95517,0.05192,0.05059,0.70849,0.71543,0.41181,0.41549,101,101,B,B,biological fallback assumption,illumina,nextseq,unknown,cdna_unspecified,trueseq,sc_generic,single_cell_generic,generic-scrnaseq-only,,Poland,2024-04-18,Larval,Larval,Eye,Sensory System 31854,SRR28735532,SRX24301503,SRS21065422,SRP502615,PRJNA1101945,Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics [RNA seq],GSE264309,Transcriptome Analysis,Calcium is involved in vision processes in retina and is implicated in various pathologies including glaucoma. Rods are protected against prolonged lowering of intracellular calcium ion concentrations by Store Operated Calcium Entry SOCE. We showed zebrafish lacking SOCE calcium sensor Stim2 had problem with vision as indicated by behavior tests staining of retina and downregulation of genes related to light perception. In this work we aimed to understand the mechanism responsible for the vision problems in stim2 zebrafish knockout. scRNA sequencing of neuronal origin cells from brains of 5 dpf larvae identified 27 clusters. Differently expressed genes were detected in ten clusters including amacrine and GABAergic retinal interneurons and GABAergic optic tectum cells. In five clusters the proportion of cells in stim2 KO fish versus control was significantly decreased including GABAergic diencephalon and optic tectum and was increased in amacrine and GABAergic retinal interneurons. Transmission Electron Microscopy in stim2 KO fish revealed decrease in width of inner plexiform layer IPL ganglion cells and their dendrites numbers what is characteristic for glaucoma. Analysis of cell density in the inner nucleus layer which includes amacrine cells among others showed a significant decrease in the number of GABAergic neurons. The area of cristae in photoreceptor mitochondria was statistically lower in stim2 KO than in control retinas. Overall design: AB and double knockout for stim2 stim2a;stim2b / zebrafish 5dpf larvae were used to isolate the total RNA from their eyes. The experimental setup involved 3 replicates per each condition stim2 KO vs control consisting of 35 eyes per repetition.,parent bioproject:PRJNA1101942,pubmed:39424970,,Tg repllicate 1 RNASeq,GSM8215873,,source name:eye|tissue:eye|genotype:AB|age:5 dpf|geo loc name:missing|collection date:missing,Tg repllicate 1 RNASeq,Raw RNA seq data were converted to FASTQ format with bcl2fastq2 v2.17 Illumina and FastQC v0.11.4 was used to assess the quality of each sequencing run. We then utilized the SQuIRE pipeline45 for subsequent steps. STAR version 2.5.3a StringTie version 1.3.3b and DESeq2 version 1.16.149 were used within the SQuIRE pipeline for read alignment transcript assembly and quantification for each replicate and differential gene expression analysis respectively. Assembly: Danio rerio GRCz11 Supplementary files format and content: Tab separated files with raw reads for each sample,eye,,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer’s recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,tissue:eye|genotype:AB|age:5 dpf,GSM8215873,GSM8215873: Tg repllicate 1 RNASeq; Danio rerio; RNA Seq,GSM8215873 r1,GSM8215873,1,Total RNA was isolated for RNA seq using TRIzol reagent. Thirty five larvae were pooled together to comprise one RNA sample. The quality of RNA was checked by measuring absorbance at 260 280 and 230 nm and Bioanalyzer Nano RNA chip Agilent USA analysis. Samples with 260/280 nm and 230/280 nm absorbance ratio >1.8 and RNA integrity number values >8 were used for further processing. Total RNA was first digested by DNase I and purified using the RNA Clean and Concentrator Kit ZYMO Research Irvine CA USA according to the manufacturer's recommendations. Library construction was conducted using stranded Illumina TruSeq protocol.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP502615,,loader:fastq load.py,wt_rep_1_R1_001.fastq.gz wt_rep_1_R2_001.fastq.gz,fastq fastq,4771981138.0,23623669.0,GSM8215873 r1,0:101 1:101,A:1222918015;C:1171619846;G:1231393968;T:1145997219;N:52090,101,101,,,1222918015,1171619846,1231393968,1145997219,52090,SRX24301503,SRS21065422,SRA1848589,"Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS","Laboratory of Bioinformatics, Institute of Bioorganic Chemistry PAS",2,0.95739,0.95621,0.05362,0.0539,0.71301,0.71979,0.42337,0.40836,101,101,B,B,biological fallback assumption,illumina,nextseq,unknown,cdna_unspecified,trueseq,sc_generic,single_cell_generic,generic-scrnaseq-only,,Poland,2024-04-18,Larval,Larval,Eye,Sensory System 56093,SRR10887617,SRX7556598,SRS5993979,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGCGGC: hair cells wt 4H11,GSM4271797,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGCGGC: hair cells wt 4H11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271797,GSM4271797: TGCGGC: hair cells wt 4H11; Danio rerio; RNA Seq,GSM4271797,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271797,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGCGGC_r1.fq.gz GEO_TGCGGC_r2.fq.gz,fastq fastq,43663620.0,661570.0,GSM4271797 r1,0:16 1:50,A:10980262;C:9600102;G:10988621;T:12083118;N:11517,16,50,,,10980262,9600102,10988621,12083118,11517,SRX7556598,SRS5993979,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.89859,0.0,0.07802,1.0,0.97682,,0.4968,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56094,SRR10887616,SRX7556597,SRS5993978,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCGGCG: hair cells wt 4H10,GSM4271796,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCGGCG: hair cells wt 4H10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271796,GSM4271796: TCGGCG: hair cells wt 4H10; Danio rerio; RNA Seq,GSM4271796,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271796,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCGGCG_r1.fq.gz GEO_TCGGCG_r2.fq.gz,fastq fastq,22768350.0,344975.0,GSM4271796 r1,0:16 1:50,A:5596078;C:4886377;G:5930717;T:6350111;N:5067,16,50,,,5596078,4886377,5930717,6350111,5067,SRX7556597,SRS5993978,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88535,0.0,0.08707,1.0,0.98494,,0.4351,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56095,SRR10887615,SRX7556596,SRS5993982,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCCCCG: hair cells wt 4H9,GSM4271795,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCCCCG: hair cells wt 4H9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271795,GSM4271795: TCCCCG: hair cells wt 4H9; Danio rerio; RNA Seq,GSM4271795,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271795,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCCCCG_r1.fq.gz GEO_TCCCCG_r2.fq.gz,fastq fastq,38242578.0,579433.0,GSM4271795 r1,0:16 1:50,A:9595312;C:9433451;G:8997891;T:10207672;N:8252,16,50,,,9595312,9433451,8997891,10207672,8252,SRX7556596,SRS5993982,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81703,0.0,0.06164,1.0,0.97768,,0.49143,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56096,SRR10887614,SRX7556595,SRS5993977,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GTCGGC: hair cells wt 4H8,GSM4271794,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GTCGGC: hair cells wt 4H8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271794,GSM4271794: GTCGGC: hair cells wt 4H8; Danio rerio; RNA Seq,GSM4271794,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271794,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GTCGGC_r2.fq.gz GEO_GTCGGC_r1.fq.gz,fastq fastq,24562824.0,372164.0,GSM4271794 r1,0:16 1:50,A:6106780;C:5478045;G:6286868;T:6684497;N:6634,16,50,,,6106780,5478045,6286868,6684497,6634,SRX7556595,SRS5993977,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86176,0.0,0.07352,1.0,0.98052,,0.45168,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56097,SRR10887613,SRX7556594,SRS5993976,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GGTGCG: hair cells wt 4H7,GSM4271793,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GGTGCG: hair cells wt 4H7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271793,GSM4271793: GGTGCG: hair cells wt 4H7; Danio rerio; RNA Seq,GSM4271793,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271793,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GGTGCG_r1.fq.gz GEO_GGTGCG_r2.fq.gz,fastq fastq,24573120.0,372320.0,GSM4271793 r1,0:16 1:50,A:6100442;C:5201156;G:6470564;T:6794081;N:6877,16,50,,,6100442,5201156,6470564,6794081,6877,SRX7556594,SRS5993976,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.84609,0.0,0.07426,1.0,0.98549,,0.38014,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56098,SRR10887612,SRX7556593,SRS5993981,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCGGGA: hair cells wt 4G11,GSM4271792,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCGGGA: hair cells wt 4G11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271792,GSM4271792: GCGGGA: hair cells wt 4G11; Danio rerio; RNA Seq,GSM4271792,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271792,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCGGGA_r1.fq.gz GEO_GCGGGA_r2.fq.gz,fastq fastq,27407886.0,415271.0,GSM4271792 r1,0:16 1:50,A:7308875;C:5649646;G:7245666;T:7196334;N:7365,16,50,,,7308875,5649646,7245666,7196334,7365,SRX7556593,SRS5993981,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86238,0.0,0.07458,1.0,0.98571,,0.47913,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56099,SRR10887611,SRX7556592,SRS5993974,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCGCGT: hair cells wt 4G10,GSM4271791,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCGCGT: hair cells wt 4G10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271791,GSM4271791: GCGCGT: hair cells wt 4G10; Danio rerio; RNA Seq,GSM4271791,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271791,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCGCGT_r1.fq.gz GEO_GCGCGT_r2.fq.gz,fastq fastq,20750466.0,314401.0,GSM4271791 r1,0:16 1:50,A:5141353;C:4540611;G:5281606;T:5781160;N:5736,16,50,,,5141353,4540611,5281606,5781160,5736,SRX7556592,SRS5993974,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88471,0.0,0.07169,1.0,0.98707,,0.42399,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56100,SRR10887610,SRX7556591,SRS5993973,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCGACG: hair cells wt 4G9,GSM4271790,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCGACG: hair cells wt 4G9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271790,GSM4271790: GCGACG: hair cells wt 4G9; Danio rerio; RNA Seq,GSM4271790,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271790,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCGACG_r1.fq.gz GEO_GCGACG_r2.fq.gz,fastq fastq,19658100.0,297850.0,GSM4271790 r1,0:16 1:50,A:5205744;C:4275466;G:5026996;T:5144761;N:5133,16,50,,,5205744,4275466,5026996,5144761,5133,SRX7556591,SRS5993973,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.89191,0.0,0.06686,1.0,0.98131,,0.54948,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56101,SRR10887609,SRX7556590,SRS5993975,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCCGGT: hair cells wt 4G8,GSM4271789,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCCGGT: hair cells wt 4G8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271789,GSM4271789: GCCGGT: hair cells wt 4G8; Danio rerio; RNA Seq,GSM4271789,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271789,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCCGGT_r1.fq.gz GEO_GCCGGT_r2.fq.gz,fastq fastq,34655676.0,525086.0,GSM4271789 r1,0:16 1:50,A:8563248;C:7767967;G:8892276;T:9422886;N:9299,16,50,,,8563248,7767967,8892276,9422886,9299,SRX7556590,SRS5993975,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.85312,0.0,0.06695,1.0,0.98524,,0.39088,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56102,SRR10887608,SRX7556589,SRS5993980,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCCCGA: hair cells wt 4G7,GSM4271788,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCCCGA: hair cells wt 4G7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271788,GSM4271788: GCCCGA: hair cells wt 4G7; Danio rerio; RNA Seq,GSM4271788,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271788,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCCCGA_r1.fq.gz GEO_GCCCGA_r2.fq.gz,fastq fastq,47296194.0,716609.0,GSM4271788 r1,0:16 1:50,A:12506634;C:11308000;G:11147016;T:12323583;N:10961,16,50,,,12506634,11308000,11147016,12323583,10961,SRX7556589,SRS5993980,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.75974,0.0,0.07461,1.0,0.98143,,0.44424,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56103,SRR10887607,SRX7556588,SRS5993972,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGGTCC: hair cells wt 4F12,GSM4271787,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGGTCC: hair cells wt 4F12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271787,GSM4271787: CGGTCC: hair cells wt 4F12; Danio rerio; RNA Seq,GSM4271787,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271787,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGGTCC_r1.fq.gz GEO_CGGTCC_r2.fq.gz,fastq fastq,25047000.0,379500.0,GSM4271787 r1,0:16 1:50,A:5998231;C:6033916;G:6166856;T:6841133;N:6864,16,50,,,5998231,6033916,6166856,6841133,6864,SRX7556588,SRS5993972,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86579,0.0,0.06304,1.0,0.98557,,0.40593,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56104,SRR10887606,SRX7556587,SRS5993971,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGGGAG: hair cells wt 4F11,GSM4271786,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGGGAG: hair cells wt 4F11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271786,GSM4271786: CGGGAG: hair cells wt 4F11; Danio rerio; RNA Seq,GSM4271786,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271786,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGGGAG_r1.fq.gz GEO_CGGGAG_r2.fq.gz,fastq fastq,17233986.0,261121.0,GSM4271786 r1,0:16 1:50,A:4479383;C:3511799;G:4707128;T:4530531;N:5145,16,50,,,4479383,3511799,4707128,4530531,5145,SRX7556587,SRS5993971,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.89442,0.0,0.07953,1.0,0.98524,,0.47235,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56105,SRR10887605,SRX7556586,SRS5993987,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGGCAC: hair cells wt 4F10,GSM4271785,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGGCAC: hair cells wt 4F10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271785,GSM4271785: CGGCAC: hair cells wt 4F10; Danio rerio; RNA Seq,GSM4271785,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271785,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGGCAC_r1.fq.gz GEO_CGGCAC_r2.fq.gz,fastq fastq,30505200.0,462200.0,GSM4271785 r1,0:16 1:50,A:8102580;C:6867077;G:7305104;T:8221444;N:8995,16,50,,,8102580,6867077,7305104,8221444,8995,SRX7556586,SRS5993987,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.89338,0.0,0.08357,1.0,0.98557,,0.50949,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56106,SRR10887604,SRX7556585,SRS5993968,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGCTCG: hair cells wt 4F9,GSM4271784,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGCTCG: hair cells wt 4F9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271784,GSM4271784: CGCTCG: hair cells wt 4F9; Danio rerio; RNA Seq,GSM4271784,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271784,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGCTCG_r2.fq.gz GEO_CGCTCG_r1.fq.gz,fastq fastq,52351398.0,793203.0,GSM4271784 r1,0:16 1:50,A:12807706;C:12020314;G:13385072;T:14123256;N:15050,16,50,,,12807706,12020314,13385072,14123256,15050,SRX7556585,SRS5993968,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.57439,0.0,0.06392,1.0,0.98253,,0.42209,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56107,SRR10887603,SRX7556584,SRS5993969,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGCGAC: hair cells wt 4F8,GSM4271783,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGCGAC: hair cells wt 4F8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271783,GSM4271783: CGCGAC: hair cells wt 4F8; Danio rerio; RNA Seq,GSM4271783,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271783,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGCGAC_r1.fq.gz GEO_CGCGAC_r2.fq.gz,fastq fastq,23345586.0,353721.0,GSM4271783 r1,0:16 1:50,A:6171925;C:5383523;G:5555672;T:6227469;N:6997,16,50,,,6171925,5383523,5555672,6227469,6997,SRX7556584,SRS5993969,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.8601,0.0,0.10116,1.0,0.98419,,0.4521,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56108,SRR10887602,SRX7556583,SRS5993967,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGCCAG: hair cells wt 4F7,GSM4271782,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGCCAG: hair cells wt 4F7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271782,GSM4271782: CGCCAG: hair cells wt 4F7; Danio rerio; RNA Seq,GSM4271782,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271782,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGCCAG_r1.fq.gz GEO_CGCCAG_r2.fq.gz,fastq fastq,14317578.0,216933.0,GSM4271782 r1,0:16 1:50,A:3909348;C:3253582;G:3411025;T:3739224;N:4399,16,50,,,3909348,3253582,3411025,3739224,4399,SRX7556583,SRS5993967,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.79255,0.0,0.14794,1.0,0.98644,,0.60725,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56109,SRR10887601,SRX7556582,SRS5993986,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CCAGGG: hair cells wt 4E12,GSM4271781,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CCAGGG: hair cells wt 4E12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271781,GSM4271781: CCAGGG: hair cells wt 4E12; Danio rerio; RNA Seq,GSM4271781,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271781,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CCAGGG_r1.fq.gz GEO_CCAGGG_r2.fq.gz,fastq fastq,24273084.0,367774.0,GSM4271781 r1,0:16 1:50,A:6469335;C:5140316;G:6075899;T:6580531;N:7003,16,50,,,6469335,5140316,6075899,6580531,7003,SRX7556582,SRS5993986,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86792,0.0,0.13118,1.0,0.98466,,0.51743,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56110,SRR10887600,SRX7556581,SRS5993966,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CAGGCC: hair cells wt 4E11,GSM4271780,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CAGGCC: hair cells wt 4E11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271780,GSM4271780: CAGGCC: hair cells wt 4E11; Danio rerio; RNA Seq,GSM4271780,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271780,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CAGGCC_r2.fq.gz GEO_CAGGCC_r1.fq.gz,fastq fastq,21957210.0,332685.0,GSM4271780 r1,0:16 1:50,A:5733552;C:5210288;G:5238165;T:5768948;N:6257,16,50,,,5733552,5210288,5238165,5768948,6257,SRX7556581,SRS5993966,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.82741,0.0,0.0895,1.0,0.9862,,0.50397,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56111,SRR10887599,SRX7556580,SRS5993970,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CACGCG: hair cells wt 4E10,GSM4271779,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CACGCG: hair cells wt 4E10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271779,GSM4271779: CACGCG: hair cells wt 4E10; Danio rerio; RNA Seq,GSM4271779,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271779,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CACGCG_r1.fq.gz GEO_CACGCG_r2.fq.gz,fastq fastq,25959582.0,393327.0,GSM4271779 r1,0:16 1:50,A:6981800;C:5837017;G:6108203;T:7025734;N:6828,16,50,,,6981800,5837017,6108203,7025734,6828,SRX7556580,SRS5993970,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86201,0.0,0.10766,1.0,0.98464,,0.46435,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56112,SRR10887598,SRX7556579,SRS5993965,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGGGCG: hair cells wt 4E9,GSM4271778,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGGGCG: hair cells wt 4E9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271778,GSM4271778: AGGGCG: hair cells wt 4E9; Danio rerio; RNA Seq,GSM4271778,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271778,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGGGCG_r1.fq.gz GEO_AGGGCG_r2.fq.gz,fastq fastq,22538274.0,341489.0,GSM4271778 r1,0:16 1:50,A:6077196;C:4338921;G:5951815;T:6165292;N:5050,16,50,,,6077196,4338921,5951815,6165292,5050,SRX7556579,SRS5993965,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.8557,0.0,0.1692,1.0,0.98042,,0.55115,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56113,SRR10887597,SRX7556578,SRS5993984,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGCGCC: hair cells wt 4E8,GSM4271777,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGCGCC: hair cells wt 4E8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271777,GSM4271777: AGCGCC: hair cells wt 4E8; Danio rerio; RNA Seq,GSM4271777,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271777,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGCGCC_r1.fq.gz GEO_AGCGCC_r2.fq.gz,fastq fastq,16579134.0,251199.0,GSM4271777 r1,0:16 1:50,A:4407189;C:3879034;G:3989040;T:4299921;N:3950,16,50,,,4407189,3879034,3989040,4299921,3950,SRX7556578,SRS5993984,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81806,0.0,0.06974,1.0,0.9847,,0.47148,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56114,SRR10887596,SRX7556577,SRS5993985,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ACGGCC: hair cells wt 4E7,GSM4271776,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ACGGCC: hair cells wt 4E7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271776,GSM4271776: ACGGCC: hair cells wt 4E7; Danio rerio; RNA Seq,GSM4271776,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271776,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ACGGCC_r1.fq.gz GEO_ACGGCC_r2.fq.gz,fastq fastq,118857420.0,1800870.0,GSM4271776 r1,0:16 1:50,A:29791771;C:29519453;G:31033819;T:28481312;N:31065,16,50,,,29791771,29519453,31033819,28481312,31065,SRX7556577,SRS5993985,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.72883,0.0,0.23389,1.0,0.97792,,0.5079,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56115,SRR10887595,SRX7556576,SRS5993962,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GATCGT: hair cells wt 4D12,GSM4271775,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GATCGT: hair cells wt 4D12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271775,GSM4271775: GATCGT: hair cells wt 4D12; Danio rerio; RNA Seq,GSM4271775,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271775,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GATCGT_r1.fq.gz GEO_GATCGT_r2.fq.gz,fastq fastq,33894102.0,513547.0,GSM4271775 r1,0:16 1:50,A:8954709;C:6672608;G:8290536;T:9966379;N:9870,16,50,,,8954709,6672608,8290536,9966379,9870,SRX7556576,SRS5993962,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88831,0.0,0.07983,1.0,0.98029,,0.48458,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56116,SRR10887594,SRX7556575,SRS5993964,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGATTG: hair cells wt 4D11,GSM4271774,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGATTG: hair cells wt 4D11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271774,GSM4271774: CGATTG: hair cells wt 4D11; Danio rerio; RNA Seq,GSM4271774,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271774,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGATTG_r1.fq.gz GEO_CGATTG_r2.fq.gz,fastq fastq,18082020.0,273970.0,GSM4271774 r1,0:16 1:50,A:4869073;C:3585379;G:4430790;T:5191055;N:5723,16,50,,,4869073,3585379,4430790,5191055,5723,SRX7556575,SRS5993964,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.84709,0.0,0.19188,1.0,0.98086,,0.52053,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56117,SRR10887593,SRX7556574,SRS5993960,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CATGGT: hair cells wt 4D10,GSM4271773,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CATGGT: hair cells wt 4D10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271773,GSM4271773: CATGGT: hair cells wt 4D10; Danio rerio; RNA Seq,GSM4271773,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271773,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CATGGT_r1.fq.gz GEO_CATGGT_r2.fq.gz,fastq fastq,22401654.0,339419.0,GSM4271773 r1,0:16 1:50,A:5861732;C:4558444;G:5514064;T:6461033;N:6381,16,50,,,5861732,4558444,5514064,6461033,6381,SRX7556574,SRS5993960,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.85022,0.0,0.07553,1.0,0.98433,,0.43146,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56118,SRR10887592,SRX7556573,SRS5993961,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CAAGCT: hair cells wt 4D9,GSM4271772,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CAAGCT: hair cells wt 4D9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271772,GSM4271772: CAAGCT: hair cells wt 4D9; Danio rerio; RNA Seq,GSM4271772,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271772,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CAAGCT_r1.fq.gz GEO_CAAGCT_r2.fq.gz,fastq fastq,21428154.0,324669.0,GSM4271772 r1,0:16 1:50,A:5942829;C:4731188;G:4990655;T:5756895;N:6587,16,50,,,5942829,4731188,4990655,5756895,6587,SRX7556573,SRS5993961,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.84948,0.0,0.11697,1.0,0.98482,,0.49134,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56119,SRR10887591,SRX7556572,SRS5993958,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ACCGTA: hair cells wt 4D8,GSM4271771,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ACCGTA: hair cells wt 4D8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271771,GSM4271771: ACCGTA: hair cells wt 4D8; Danio rerio; RNA Seq,GSM4271771,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271771,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ACCGTA_r1.fq.gz GEO_ACCGTA_r2.fq.gz,fastq fastq,32023728.0,485208.0,GSM4271771 r1,0:16 1:50,A:8851322;C:7094664;G:7465921;T:8602598;N:9223,16,50,,,8851322,7094664,7465921,8602598,9223,SRX7556572,SRS5993958,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81584,0.0,0.07569,1.0,0.98701,,0.43154,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56120,SRR10887590,SRX7556571,SRS5993957,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TTTTCT: hair cells wt 4D7,GSM4271770,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TTTTCT: hair cells wt 4D7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271770,GSM4271770: TTTTCT: hair cells wt 4D7; Danio rerio; RNA Seq,GSM4271770,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271770,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TTTTCT_r1.fq.gz GEO_TTTTCT_r2.fq.gz,fastq fastq,30970962.0,469257.0,GSM4271770 r1,0:16 1:50,A:7685607;C:6225340;G:6659308;T:10392742;N:7965,16,50,,,7685607,6225340,6659308,10392742,7965,SRX7556571,SRS5993957,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83325,0.0,0.10718,1.0,0.98157,,0.49058,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56121,SRR10887589,SRX7556570,SRS5993955,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGTTAT: hair cells wt 4C12,GSM4271769,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGTTAT: hair cells wt 4C12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271769,GSM4271769: TGTTAT: hair cells wt 4C12; Danio rerio; RNA Seq,GSM4271769,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271769,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGTTAT_r1.fq.gz GEO_TGTTAT_r2.fq.gz,fastq fastq,27958458.0,423613.0,GSM4271769 r1,0:16 1:50,A:7253350;C:5460413;G:6559816;T:8677521;N:7358,16,50,,,7253350,5460413,6559816,8677521,7358,SRX7556570,SRS5993955,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83012,0.0,0.08904,1.0,0.98675,,0.37785,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56122,SRR10887588,SRX7556569,SRS5993963,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGATAA: hair cells wt 4C11,GSM4271768,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGATAA: hair cells wt 4C11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271768,GSM4271768: TGATAA: hair cells wt 4C11; Danio rerio; RNA Seq,GSM4271768,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271768,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGATAA_r1.fq.gz GEO_TGATAA_r2.fq.gz,fastq fastq,16311570.0,247145.0,GSM4271768 r1,0:16 1:50,A:4698682;C:3073287;G:3789253;T:4746028;N:4320,16,50,,,4698682,3073287,3789253,4746028,4320,SRX7556569,SRS5993963,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83888,0.0,0.09183,1.0,0.98715,,0.45564,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56123,SRR10887587,SRX7556568,SRS5993959,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCTATA: hair cells wt 4C10,GSM4271767,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCTATA: hair cells wt 4C10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271767,GSM4271767: TCTATA: hair cells wt 4C10; Danio rerio; RNA Seq,GSM4271767,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271767,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCTATA_r1.fq.gz GEO_TCTATA_r2.fq.gz,fastq fastq,21750102.0,329547.0,GSM4271767 r1,0:16 1:50,A:6098788;C:4298102;G:4613696;T:6733786;N:5730,16,50,,,6098788,4298102,4613696,6733786,5730,SRX7556568,SRS5993959,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88556,0.0,0.09247,1.0,0.98632,,0.51526,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56124,SRR10887586,SRX7556567,SRS5993954,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCAATT: hair cells wt 4C9,GSM4271766,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCAATT: hair cells wt 4C9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271766,GSM4271766: TCAATT: hair cells wt 4C9; Danio rerio; RNA Seq,GSM4271766,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271766,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCAATT_r1.fq.gz GEO_TCAATT_r2.fq.gz,fastq fastq,23862894.0,361559.0,GSM4271766 r1,0:16 1:50,A:6588667;C:4897780;G:5179183;T:7191284;N:5980,16,50,,,6588667,4897780,5179183,7191284,5980,SRX7556567,SRS5993954,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86481,0.0,0.11034,1.0,0.98326,,0.40522,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56125,SRR10887585,SRX7556566,SRS5993956,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATTCA: hair cells wt 4C8,GSM4271765,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATTCA: hair cells wt 4C8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271765,GSM4271765: TATTCA: hair cells wt 4C8; Danio rerio; RNA Seq,GSM4271765,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271765,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATTCA_r1.fq.gz GEO_TATTCA_r2.fq.gz,fastq fastq,17886990.0,271015.0,GSM4271765 r1,0:16 1:50,A:4891618;C:3686776;G:3988141;T:5315845;N:4610,16,50,,,4891618,3686776,3988141,5315845,4610,SRX7556566,SRS5993956,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81672,0.0,0.1005,1.0,0.98561,,0.42678,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56126,SRR10887584,SRX7556565,SRS5993952,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATCTA: hair cells wt 4C7,GSM4271764,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATCTA: hair cells wt 4C7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271764,GSM4271764: TATCTA: hair cells wt 4C7; Danio rerio; RNA Seq,GSM4271764,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271764,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATCTA_r1.fq.gz GEO_TATCTA_r2.fq.gz,fastq fastq,67991880.0,1030180.0,GSM4271764 r1,0:16 1:50,A:18256048;C:14118538;G:16365381;T:19234623;N:17290,16,50,,,18256048,14118538,16365381,19234623,17290,SRX7556565,SRS5993952,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.74612,0.0,0.10089,1.0,0.97877,,0.49534,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56127,SRR10887583,SRX7556564,SRS5993953,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GTTATT: hair cells wt 4B12,GSM4271763,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GTTATT: hair cells wt 4B12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271763,GSM4271763: GTTATT: hair cells wt 4B12; Danio rerio; RNA Seq,GSM4271763,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271763,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GTTATT_r1.fq.gz GEO_GTTATT_r2.fq.gz,fastq fastq,33621720.0,509420.0,GSM4271763 r1,0:16 1:50,A:8782917;C:6333781;G:7803342;T:10694526;N:7154,16,50,,,8782917,6333781,7803342,10694526,7154,SRX7556564,SRS5993953,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83277,0.0,0.09046,1.0,0.98208,,0.42767,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56128,SRR10887582,SRX7556563,SRS5993950,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GTAAAT: hair cells wt 4B11,GSM4271762,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GTAAAT: hair cells wt 4B11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271762,GSM4271762: GTAAAT: hair cells wt 4B11; Danio rerio; RNA Seq,GSM4271762,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271762,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GTAAAT_r1.fq.gz GEO_GTAAAT_r2.fq.gz,fastq fastq,32995116.0,499926.0,GSM4271762 r1,0:16 1:50,A:9697104;C:6185335;G:7695283;T:9409420;N:7974,16,50,,,9697104,6185335,7695283,9409420,7974,SRX7556563,SRS5993950,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86836,0.0,0.1074,1.0,0.98384,,0.42561,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56129,SRR10887581,SRX7556562,SRS5993949,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GAATTA: hair cells wt 4B10,GSM4271761,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GAATTA: hair cells wt 4B10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271761,GSM4271761: GAATTA: hair cells wt 4B10; Danio rerio; RNA Seq,GSM4271761,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271761,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GAATTA_r1.fq.gz GEO_GAATTA_r2.fq.gz,fastq fastq,33700524.0,510614.0,GSM4271761 r1,0:16 1:50,A:9951851;C:6205852;G:7868259;T:9667023;N:7539,16,50,,,9951851,6205852,7868259,9667023,7539,SRX7556562,SRS5993949,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86693,0.0,0.08211,1.0,0.9807,,0.4477,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56130,SRR10887580,SRX7556561,SRS5993951,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CTTATA: hair cells wt 4B9,GSM4271760,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CTTATA: hair cells wt 4B9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271760,GSM4271760: CTTATA: hair cells wt 4B9; Danio rerio; RNA Seq,GSM4271760,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271760,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CTTATA_r2.fq.gz GEO_CTTATA_r1.fq.gz,fastq fastq,18144654.0,274919.0,GSM4271760 r1,0:16 1:50,A:5154253;C:3585215;G:3991271;T:5409596;N:4319,16,50,,,5154253,3585215,3991271,5409596,4319,SRX7556561,SRS5993951,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81083,0.0,0.12691,1.0,0.97979,,0.53705,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56131,SRR10887579,SRX7556560,SRS5993947,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CTAATT: hair cells wt 4B8,GSM4271759,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CTAATT: hair cells wt 4B8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271759,GSM4271759: CTAATT: hair cells wt 4B8; Danio rerio; RNA Seq,GSM4271759,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271759,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CTAATT_r1.fq.gz GEO_CTAATT_r2.fq.gz,fastq fastq,21875304.0,331444.0,GSM4271759 r1,0:16 1:50,A:6178378;C:4411583;G:4735412;T:6545030;N:4901,16,50,,,6178378,4411583,4735412,6545030,4901,SRX7556560,SRS5993947,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.79469,0.0,0.15397,1.0,0.9847,,0.52729,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56132,SRR10887578,SRX7556559,SRS5993946,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CATATT: hair cells wt 4B7,GSM4271758,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CATATT: hair cells wt 4B7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271758,GSM4271758: CATATT: hair cells wt 4B7; Danio rerio; RNA Seq,GSM4271758,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271758,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CATATT_r1.fq.gz GEO_CATATT_r2.fq.gz,fastq fastq,2295744.0,34784.0,GSM4271758 r1,0:16 1:50,A:639356;C:454332;G:505930;T:695524;N:602,16,50,,,639356,454332,505930,695524,602,SRX7556559,SRS5993946,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.75545,0.0,0.11978,1.0,0.99239,,0.47601,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56133,SRR10887577,SRX7556558,SRS5993945,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ATAGTA: hair cells wt 4A12,GSM4271757,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ATAGTA: hair cells wt 4A12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271757,GSM4271757: ATAGTA: hair cells wt 4A12; Danio rerio; RNA Seq,GSM4271757,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271757,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ATAGTA_r1.fq.gz GEO_ATAGTA_r2.fq.gz,fastq fastq,29857542.0,452387.0,GSM4271757 r1,0:16 1:50,A:8650587;C:5671216;G:6756185;T:8771447;N:8107,16,50,,,8650587,5671216,6756185,8771447,8107,SRX7556558,SRS5993945,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.8678,0.0,0.0651,1.0,0.98502,,0.43445,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56134,SRR10887576,SRX7556557,SRS5993943,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ATAATG: hair cells wt 4A11,GSM4271756,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ATAATG: hair cells wt 4A11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271756,GSM4271756: ATAATG: hair cells wt 4A11; Danio rerio; RNA Seq,GSM4271756,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271756,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ATAATG_r2.fq.gz GEO_ATAATG_r1.fq.gz,fastq fastq,4178658.0,63313.0,GSM4271756 r1,0:16 1:50,A:1254421;C:788868;G:971659;T:1162609;N:1101,16,50,,,1254421,788868,971659,1162609,1101,SRX7556557,SRS5993943,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.70686,0.0,0.57365,1.0,0.99066,,0.50095,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56135,SRR10887575,SRX7556556,SRS5993942,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGTTAA: hair cells wt 4A10,GSM4271755,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGTTAA: hair cells wt 4A10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271755,GSM4271755: AGTTAA: hair cells wt 4A10; Danio rerio; RNA Seq,GSM4271755,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271755,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGTTAA_r1.fq.gz GEO_AGTTAA_r2.fq.gz,fastq fastq,34809588.0,527418.0,GSM4271755 r1,0:16 1:50,A:10137071;C:6623358;G:8098271;T:9941324;N:9564,16,50,,,10137071,6623358,8098271,9941324,9564,SRX7556556,SRS5993942,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.8522,0.0,0.06792,1.0,0.98577,,0.39584,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56136,SRR10887574,SRX7556555,SRS5993948,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGATAT: hair cells wt 4A9,GSM4271754,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGATAT: hair cells wt 4A9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271754,GSM4271754: AGATAT: hair cells wt 4A9; Danio rerio; RNA Seq,GSM4271754,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271754,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGATAT_r2.fq.gz GEO_AGATAT_r1.fq.gz,fastq fastq,28077060.0,425410.0,GSM4271754 r1,0:16 1:50,A:8318473;C:5276710;G:6472058;T:8001915;N:7904,16,50,,,8318473,5276710,6472058,8001915,7904,SRX7556555,SRS5993948,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86296,0.0,0.09442,1.0,0.98157,,0.41782,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56137,SRR10887573,SRX7556554,SRS5993941,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ACTATT: hair cells wt 4A8,GSM4271753,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ACTATT: hair cells wt 4A8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271753,GSM4271753: ACTATT: hair cells wt 4A8; Danio rerio; RNA Seq,GSM4271753,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271753,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ACTATT_r1.fq.gz GEO_ACTATT_r2.fq.gz,fastq fastq,36810312.0,557732.0,GSM4271753 r1,0:16 1:50,A:10070588;C:7531734;G:7811902;T:11387603;N:8485,16,50,,,10070588,7531734,7811902,11387603,8485,SRX7556554,SRS5993941,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.87534,0.0,0.07813,1.0,0.98384,,0.46263,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56138,SRR10887572,SRX7556553,SRS5993944,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ACAAAT: hair cells wt 4A7,GSM4271752,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ACAAAT: hair cells wt 4A7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271752,GSM4271752: ACAAAT: hair cells wt 4A7; Danio rerio; RNA Seq,GSM4271752,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271752,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ACAAAT_r1.fq.gz GEO_ACAAAT_r2.fq.gz,fastq fastq,75215184.0,1139624.0,GSM4271752 r1,0:16 1:50,A:22762180;C:15723998;G:17654105;T:19052173;N:22728,16,50,,,22762180,15723998,17654105,19052173,22728,SRX7556553,SRS5993944,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.69908,0.0,0.11765,1.0,0.97737,,0.44964,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56139,SRR10887571,SRX7556552,SRS5993939,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGCCCC: hair cells wt 2H11,GSM4271751,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGCCCC: hair cells wt 2H11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271751,GSM4271751: TGCCCC: hair cells wt 2H11; Danio rerio; RNA Seq,GSM4271751,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271751,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGCCCC_r1.fq.gz GEO_TGCCCC_r2.fq.gz,fastq fastq,99705870.0,1510695.0,GSM4271751 r1,0:16 1:50,A:24784931;C:24938972;G:23296385;T:26663615;N:21967,16,50,,,24784931,24938972,23296385,26663615,21967,SRX7556552,SRS5993939,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.80511,0.0,0.11382,1.0,0.96601,,0.44049,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56140,SRR10887570,SRX7556551,SRS5993938,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCCGGG: hair cells wt 2H10,GSM4271750,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCCGGG: hair cells wt 2H10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271750,GSM4271750: TCCGGG: hair cells wt 2H10; Danio rerio; RNA Seq,GSM4271750,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271750,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCCGGG_r1.fq.gz GEO_TCCGGG_r2.fq.gz,fastq fastq,156814680.0,2375980.0,GSM4271750 r1,0:16 1:50,A:36405105;C:36084740;G:45725833;T:38559969;N:39033,16,50,,,36405105,36084740,45725833,38559969,39033,SRX7556551,SRS5993938,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.64184,0.0,0.13248,1.0,0.97745,,0.55947,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56141,SRR10887569,SRX7556550,SRS5993935,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GTGGCC: hair cells wt 2H9,GSM4271749,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GTGGCC: hair cells wt 2H9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271749,GSM4271749: GTGGCC: hair cells wt 2H9; Danio rerio; RNA Seq,GSM4271749,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271749,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GTGGCC_r1.fq.gz GEO_GTGGCC_r2.fq.gz,fastq fastq,10173966.0,154151.0,GSM4271749 r1,0:16 1:50,A:2501984;C:2250525;G:2956615;T:2462095;N:2747,16,50,,,2501984,2250525,2956615,2462095,2747,SRX7556550,SRS5993935,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.25254,0.0,0.11303,1.0,0.97701,,0.51611,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56142,SRR10887568,SRX7556549,SRS5993940,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GTCCCC: hair cells wt 2H8,GSM4271748,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GTCCCC: hair cells wt 2H8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271748,GSM4271748: GTCCCC: hair cells wt 2H8; Danio rerio; RNA Seq,GSM4271748,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271748,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GTCCCC_r1.fq.gz GEO_GTCCCC_r2.fq.gz,fastq fastq,88909656.0,1347116.0,GSM4271748 r1,0:16 1:50,A:22744809;C:21441987;G:19271731;T:25429628;N:21501,16,50,,,22744809,21441987,19271731,25429628,21501,SRX7556549,SRS5993940,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.89945,0.0,0.54925,1.0,0.97522,,0.51973,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56143,SRR10887567,SRX7556548,SRS5993936,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GGGTGC: hair cells wt 2H7,GSM4271747,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GGGTGC: hair cells wt 2H7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271747,GSM4271747: GGGTGC: hair cells wt 2H7; Danio rerio; RNA Seq,GSM4271747,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271747,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GGGTGC_r1.fq.gz GEO_GGGTGC_r2.fq.gz,fastq fastq,49002294.0,742459.0,GSM4271747 r1,0:16 1:50,A:11795313;C:10365939;G:14029826;T:12796902;N:14314,16,50,,,11795313,10365939,14029826,12796902,14314,SRX7556548,SRS5993936,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.7657,0.0,0.10651,1.0,0.98167,,0.52497,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56144,SRR10887566,SRX7556547,SRS5993937,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCGGAG: hair cells wt 2G11,GSM4271746,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCGGAG: hair cells wt 2G11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271746,GSM4271746: GCGGAG: hair cells wt 2G11; Danio rerio; RNA Seq,GSM4271746,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271746,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCGGAG_r1.fq.gz GEO_GCGGAG_r2.fq.gz,fastq fastq,61406334.0,930399.0,GSM4271746 r1,0:16 1:50,A:16036263;C:12621880;G:17084575;T:15647426;N:16190,16,50,,,16036263,12621880,17084575,15647426,16190,SRX7556547,SRS5993937,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.82866,0.0,0.08484,1.0,0.97928,,0.44046,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56145,SRR10887565,SRX7556546,SRS5993934,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCGCAC: hair cells wt 2G10,GSM4271745,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCGCAC: hair cells wt 2G10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271745,GSM4271745: GCGCAC: hair cells wt 2G10; Danio rerio; RNA Seq,GSM4271745,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271745,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCGCAC_r1.fq.gz GEO_GCGCAC_r2.fq.gz,fastq fastq,103715700.0,1571450.0,GSM4271745 r1,0:16 1:50,A:27215760;C:23945117;G:26070541;T:26455572;N:28710,16,50,,,27215760,23945117,26070541,26455572,28710,SRX7556546,SRS5993934,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.85772,0.0,0.1198,1.0,0.9791,,0.48025,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56146,SRR10887564,SRX7556545,SRS5993930,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCCTCG: hair cells wt 2G9,GSM4271744,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCCTCG: hair cells wt 2G9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271744,GSM4271744: GCCTCG: hair cells wt 2G9; Danio rerio; RNA Seq,GSM4271744,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271744,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCCTCG_r1.fq.gz GEO_GCCTCG_r2.fq.gz,fastq fastq,23640144.0,358184.0,GSM4271744 r1,0:16 1:50,A:5894883;C:5651176;G:5830213;T:6257556;N:6316,16,50,,,5894883,5651176,5830213,6257556,6316,SRX7556545,SRS5993930,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.77455,0.0,0.09583,1.0,0.98315,,0.43472,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56147,SRR10887563,SRX7556544,SRS5993929,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCCGAC: hair cells wt 2G8,GSM4271743,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCCGAC: hair cells wt 2G8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271743,GSM4271743: GCCGAC: hair cells wt 2G8; Danio rerio; RNA Seq,GSM4271743,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271743,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCCGAC_r1.fq.gz GEO_GCCGAC_r2.fq.gz,fastq fastq,38128794.0,577709.0,GSM4271743 r1,0:16 1:50,A:9934273;C:9007484;G:9673915;T:9495594;N:17528,16,50,,,9934273,9007484,9673915,9495594,17528,SRX7556544,SRS5993929,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.77242,0.0,0.0868,1.0,0.98506,,0.44418,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56148,SRR10887562,SRX7556543,SRS5993932,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GCCCAG: hair cells wt 2G7,GSM4271742,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GCCCAG: hair cells wt 2G7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271742,GSM4271742: GCCCAG: hair cells wt 2G7; Danio rerio; RNA Seq,GSM4271742,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271742,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GCCCAG_r1.fq.gz GEO_GCCCAG_r2.fq.gz,fastq fastq,46788522.0,708917.0,GSM4271742 r1,0:16 1:50,A:12323933;C:10883758;G:11730463;T:11837342;N:13026,16,50,,,12323933,10883758,11730463,11837342,13026,SRX7556543,SRS5993932,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.77399,0.0,0.08918,1.0,0.98005,,0.44547,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56149,SRR10887561,SRX7556542,SRS5993927,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGGGGA: hair cells wt 2F12,GSM4271741,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGGGGA: hair cells wt 2F12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271741,GSM4271741: CGGGGA: hair cells wt 2F12; Danio rerio; RNA Seq,GSM4271741,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271741,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGGGGA_r1.fq.gz GEO_CGGGGA_r2.fq.gz,fastq fastq,29135040.0,441440.0,GSM4271741 r1,0:16 1:50,A:7693442;C:5930976;G:8161519;T:7339852;N:9251,16,50,,,7693442,5930976,8161519,7339852,9251,SRX7556542,SRS5993927,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.82074,0.0,0.11249,1.0,0.9763,,0.41743,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56150,SRR10887560,SRX7556541,SRS5993926,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGGCGT: hair cells wt 2F11,GSM4271740,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGGCGT: hair cells wt 2F11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271740,GSM4271740: CGGCGT: hair cells wt 2F11; Danio rerio; RNA Seq,GSM4271740,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271740,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGGCGT_r1.fq.gz GEO_CGGCGT_r2.fq.gz,fastq fastq,53204382.0,806127.0,GSM4271740 r1,0:16 1:50,A:13239467;C:11643256;G:14105165;T:14200599;N:15895,16,50,,,13239467,11643256,14105165,14200599,15895,SRX7556541,SRS5993926,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.78045,0.0,0.08602,1.0,0.98171,,0.42093,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56151,SRR10887559,SRX7556540,SRS5993933,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGGACG: hair cells wt 2F10,GSM4271739,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGGACG: hair cells wt 2F10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271739,GSM4271739: CGGACG: hair cells wt 2F10; Danio rerio; RNA Seq,GSM4271739,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271739,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGGACG_r1.fq.gz GEO_CGGACG_r2.fq.gz,fastq fastq,113671008.0,1722288.0,GSM4271739 r1,0:16 1:50,A:30256021;C:24026594;G:29758029;T:29596584;N:33780,16,50,,,30256021,24026594,29758029,29596584,33780,SRX7556540,SRS5993933,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.87614,0.0,0.14295,1.0,0.97688,,0.48159,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56152,SRR10887558,SRX7556539,SRS5993928,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGCGGT: hair cells wt 2F9,GSM4271738,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGCGGT: hair cells wt 2F9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271738,GSM4271738: CGCGGT: hair cells wt 2F9; Danio rerio; RNA Seq,GSM4271738,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271738,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGCGGT_r1.fq.gz GEO_CGCGGT_r2.fq.gz,fastq fastq,59444088.0,900668.0,GSM4271738 r1,0:16 1:50,A:14758639;C:12847168;G:15472154;T:16349050;N:17077,16,50,,,14758639,12847168,15472154,16349050,17077,SRX7556539,SRS5993928,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.85772,0.0,0.06994,1.0,0.98027,,0.44563,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56153,SRR10887557,SRX7556538,SRS5993925,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGCCGA: hair cells wt 2F8,GSM4271737,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGCCGA: hair cells wt 2F8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271737,GSM4271737: CGCCGA: hair cells wt 2F8; Danio rerio; RNA Seq,GSM4271737,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271737,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGCCGA_r1.fq.gz GEO_CGCCGA_r2.fq.gz,fastq fastq,58332450.0,883825.0,GSM4271737 r1,0:16 1:50,A:15100292;C:13840300;G:15452320;T:13923439;N:16099,16,50,,,15100292,13840300,15452320,13923439,16099,SRX7556538,SRS5993925,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.72198,0.0,0.09689,1.0,0.98119,,0.42056,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56154,SRR10887556,SRX7556537,SRS5993923,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CGCACC: hair cells wt 2F7,GSM4271736,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CGCACC: hair cells wt 2F7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271736,GSM4271736: CGCACC: hair cells wt 2F7; Danio rerio; RNA Seq,GSM4271736,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271736,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CGCACC_r1.fq.gz GEO_CGCACC_r2.fq.gz,fastq fastq,59064720.0,894920.0,GSM4271736 r1,0:16 1:50,A:15436523;C:14686266;G:14017782;T:14906469;N:17680,16,50,,,15436523,14686266,14017782,14906469,17680,SRX7556537,SRS5993923,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81502,0.0,0.16399,1.0,0.97847,,0.41105,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56155,SRR10887555,SRX7556536,SRS5993921,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CCACCG: hair cells wt 2E12,GSM4271735,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CCACCG: hair cells wt 2E12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271735,GSM4271735: CCACCG: hair cells wt 2E12; Danio rerio; RNA Seq,GSM4271735,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271735,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CCACCG_r1.fq.gz GEO_CCACCG_r2.fq.gz,fastq fastq,28334064.0,429304.0,GSM4271735 r1,0:16 1:50,A:7520223;C:7025285;G:6745861;T:7033764;N:8931,16,50,,,7520223,7025285,6745861,7033764,8931,SRX7556536,SRS5993921,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.80711,0.0,0.10281,1.0,0.97968,,0.36993,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56156,SRR10887554,SRX7556535,SRS5993920,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CAGCCG: hair cells wt 2E11,GSM4271734,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CAGCCG: hair cells wt 2E11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271734,GSM4271734: CAGCCG: hair cells wt 2E11; Danio rerio; RNA Seq,GSM4271734,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271734,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CAGCCG_r1.fq.gz GEO_CAGCCG_r2.fq.gz,fastq fastq,76943724.0,1165814.0,GSM4271734 r1,0:16 1:50,A:20252257;C:18252609;G:19289676;T:19127181;N:22001,16,50,,,20252257,18252609,19289676,19127181,22001,SRX7556535,SRS5993920,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.82968,0.0,0.07998,1.0,0.98098,,0.47591,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56157,SRR10887553,SRX7556534,SRS5993919,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CACCCC: hair cells wt 2E10,GSM4271733,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CACCCC: hair cells wt 2E10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271733,GSM4271733: CACCCC: hair cells wt 2E10; Danio rerio; RNA Seq,GSM4271733,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271733,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CACCCC_r1.fq.gz GEO_CACCCC_r2.fq.gz,fastq fastq,59700300.0,904550.0,GSM4271733 r1,0:16 1:50,A:15645395;C:15522037;G:13562532;T:14955831;N:14505,16,50,,,15645395,15522037,13562532,14955831,14505,SRX7556534,SRS5993919,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.74633,0.0,0.15499,1.0,0.97084,,0.51247,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56158,SRR10887552,SRX7556533,SRS5993924,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGGCCC: hair cells wt 2E9,GSM4271732,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGGCCC: hair cells wt 2E9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271732,GSM4271732: AGGCCC: hair cells wt 2E9; Danio rerio; RNA Seq,GSM4271732,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271732,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGGCCC_r1.fq.gz GEO_AGGCCC_r2.fq.gz,fastq fastq,247661106.0,3752441.0,GSM4271732 r1,0:16 1:50,A:60796649;C:61932057;G:69774659;T:55097229;N:60512,16,50,,,60796649,61932057,69774659,55097229,60512,SRX7556533,SRS5993924,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.67963,0.0,0.14932,1.0,0.9656,,0.55686,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56159,SRR10887551,SRX7556532,SRS5993918,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGCCCG: hair cells wt 2E8,GSM4271731,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGCCCG: hair cells wt 2E8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271731,GSM4271731: AGCCCG: hair cells wt 2E8; Danio rerio; RNA Seq,GSM4271731,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271731,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGCCCG_r1.fq.gz GEO_AGCCCG_r2.fq.gz,fastq fastq,85194054.0,1290819.0,GSM4271731 r1,0:16 1:50,A:21886276;C:20333936;G:22929730;T:20024600;N:19512,16,50,,,21886276,20333936,22929730,20024600,19512,SRX7556532,SRS5993918,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.77493,0.0,0.12576,1.0,0.97007,,0.54242,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56160,SRR10887550,SRX7556531,SRS5993931,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ACGCCG: hair cells wt 2E7,GSM4271730,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ACGCCG: hair cells wt 2E7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271730,GSM4271730: ACGCCG: hair cells wt 2E7; Danio rerio; RNA Seq,GSM4271730,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271730,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ACGCCG_r1.fq.gz GEO_ACGCCG_r2.fq.gz,fastq fastq,16576230.0,251155.0,GSM4271730 r1,0:16 1:50,A:4101131;C:3992983;G:4977837;T:3500149;N:4130,16,50,,,4101131,3992983,4977837,3500149,4130,SRX7556531,SRS5993931,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.22521,0.0,0.11583,1.0,0.97652,,0.49987,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56161,SRR10887549,SRX7556530,SRS5993922,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CTTCTG: hair cells wt 2D12,GSM4271729,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CTTCTG: hair cells wt 2D12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271729,GSM4271729: CTTCTG: hair cells wt 2D12; Danio rerio; RNA Seq,GSM4271729,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271729,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CTTCTG_r1.fq.gz GEO_CTTCTG_r2.fq.gz,fastq fastq,10296198.0,156003.0,GSM4271729 r1,0:16 1:50,A:2532051;C:2299039;G:2378957;T:3082993;N:3158,16,50,,,2532051,2299039,2378957,3082993,3158,SRX7556530,SRS5993922,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.8312,0.0,0.10552,1.0,0.98271,,0.50933,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56162,SRR10887548,SRX7556529,SRS5993916,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CCGATT: hair cells wt 2D11,GSM4271728,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CCGATT: hair cells wt 2D11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271728,GSM4271728: CCGATT: hair cells wt 2D11; Danio rerio; RNA Seq,GSM4271728,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271728,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CCGATT_r1.fq.gz GEO_CCGATT_r2.fq.gz,fastq fastq,62508666.0,947101.0,GSM4271728 r1,0:16 1:50,A:16582399;C:13664923;G:14482786;T:17761639;N:16919,16,50,,,16582399,13664923,14482786,17761639,16919,SRX7556529,SRS5993916,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88829,0.0,0.24871,1.0,0.98171,,0.52749,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56163,SRR10887547,SRX7556528,SRS5993915,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CAGTCA: hair cells wt 2D10,GSM4271727,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CAGTCA: hair cells wt 2D10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271727,GSM4271727: CAGTCA: hair cells wt 2D10; Danio rerio; RNA Seq,GSM4271727,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271727,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CAGTCA_r1.fq.gz GEO_CAGTCA_r2.fq.gz,fastq fastq,81890886.0,1240771.0,GSM4271727 r1,0:16 1:50,A:22385298;C:18267104;G:18858387;T:22355623;N:24474,16,50,,,22385298,18267104,18858387,22355623,24474,SRX7556528,SRS5993915,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.84616,0.0,0.08088,1.0,0.98121,,0.43702,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56164,SRR10887546,SRX7556527,SRS5993912,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGGGAT: hair cells wt 2D9,GSM4271726,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGGGAT: hair cells wt 2D9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271726,GSM4271726: AGGGAT: hair cells wt 2D9; Danio rerio; RNA Seq,GSM4271726,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271726,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGGGAT_r1.fq.gz GEO_AGGGAT_r2.fq.gz,fastq fastq,27941364.0,423354.0,GSM4271726 r1,0:16 1:50,A:7658771;C:5529411;G:7466727;T:7278034;N:8421,16,50,,,7658771,5529411,7466727,7278034,8421,SRX7556527,SRS5993912,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.71935,0.0,0.14115,1.0,0.98021,,0.39706,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56165,SRR10887545,SRX7556526,SRS5993917,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCTTTC: hair cells wt 2D8,GSM4271725,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCTTTC: hair cells wt 2D8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271725,GSM4271725: TCTTTC: hair cells wt 2D8; Danio rerio; RNA Seq,GSM4271725,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271725,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCTTTC_r1.fq.gz GEO_TCTTTC_r2.fq.gz,fastq fastq,39611286.0,600171.0,GSM4271725 r1,0:16 1:50,A:9593653;C:8891817;G:9379515;T:11735763;N:10538,16,50,,,9593653,8891817,9379515,11735763,10538,SRX7556526,SRS5993917,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.7029,0.0,0.09623,1.0,0.98005,,0.5794,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56166,SRR10887544,SRX7556525,SRS5993911,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TTTGTA: hair cells wt 2D7,GSM4271724,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TTTGTA: hair cells wt 2D7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271724,GSM4271724: TTTGTA: hair cells wt 2D7; Danio rerio; RNA Seq,GSM4271724,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271724,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TTTGTA_r1.fq.gz GEO_TTTGTA_r2.fq.gz,fastq fastq,45225048.0,685228.0,GSM4271724 r1,0:16 1:50,A:11889541;C:8360740;G:10779684;T:14183435;N:11648,16,50,,,11889541,8360740,10779684,14183435,11648,SRX7556525,SRS5993911,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81562,0.0,0.09419,1.0,0.97916,,0.51242,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56167,SRR10887543,SRX7556524,SRS5993910,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGTAAA: hair cells wt 2C12,GSM4271723,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGTAAA: hair cells wt 2C12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271723,GSM4271723: TGTAAA: hair cells wt 2C12; Danio rerio; RNA Seq,GSM4271723,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271723,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGTAAA_r1.fq.gz GEO_TGTAAA_r2.fq.gz,fastq fastq,36393456.0,551416.0,GSM4271723 r1,0:16 1:50,A:10494740;C:6916737;G:8340339;T:10629953;N:11687,16,50,,,10494740,6916737,8340339,10629953,11687,SRX7556524,SRS5993910,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88673,0.0,0.07491,1.0,0.9867,,0.42572,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56168,SRR10887542,SRX7556523,SRS5993909,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGAAAT: hair cells wt 2C11,GSM4271722,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGAAAT: hair cells wt 2C11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271722,GSM4271722: TGAAAT: hair cells wt 2C11; Danio rerio; RNA Seq,GSM4271722,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271722,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGAAAT_r1.fq.gz GEO_TGAAAT_r2.fq.gz,fastq fastq,59922720.0,907920.0,GSM4271722 r1,0:16 1:50,A:17660178;C:11271616;G:13597589;T:17378574;N:14763,16,50,,,17660178,11271616,13597589,17378574,14763,SRX7556523,SRS5993909,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86668,0.0,0.13202,1.0,0.98466,,0.47258,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56169,SRR10887541,SRX7556522,SRS5993914,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCATTA: hair cells wt 2C10,GSM4271721,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCATTA: hair cells wt 2C10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271721,GSM4271721: TCATTA: hair cells wt 2C10; Danio rerio; RNA Seq,GSM4271721,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271721,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCATTA_r1.fq.gz GEO_TCATTA_r2.fq.gz,fastq fastq,46021734.0,697299.0,GSM4271721 r1,0:16 1:50,A:12725573;C:9548168;G:10202938;T:13533019;N:12036,16,50,,,12725573,9548168,10202938,13533019,12036,SRX7556522,SRS5993914,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.79991,0.0,0.12416,1.0,0.98285,,0.51119,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56170,SRR10887540,SRX7556521,SRS5993907,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATTTG: hair cells wt 2C9,GSM4271720,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATTTG: hair cells wt 2C9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271720,GSM4271720: TATTTG: hair cells wt 2C9; Danio rerio; RNA Seq,GSM4271720,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271720,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATTTG_r1.fq.gz GEO_TATTTG_r2.fq.gz,fastq fastq,57077328.0,864808.0,GSM4271720 r1,0:16 1:50,A:15095956;C:10660095;G:12874801;T:18430756;N:15720,16,50,,,15095956,10660095,12874801,18430756,15720,SRX7556521,SRS5993907,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83235,0.0,0.08647,1.0,0.98411,,0.4321,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56171,SRR10887539,SRX7556520,SRS5993906,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATGTT: hair cells wt 2C8,GSM4271719,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATGTT: hair cells wt 2C8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271719,GSM4271719: TATGTT: hair cells wt 2C8; Danio rerio; RNA Seq,GSM4271719,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271719,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATGTT_r1.fq.gz GEO_TATGTT_r2.fq.gz,fastq fastq,82334538.0,1247493.0,GSM4271719 r1,0:16 1:50,A:21259201;C:15330189;G:20495066;T:25226866;N:23216,16,50,,,21259201,15330189,20495066,25226866,23216,SRX7556520,SRS5993906,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.82387,0.0,0.08807,1.0,0.97707,,0.53859,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56172,SRR10887538,SRX7556519,SRS5993904,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATATC: hair cells wt 2C7,GSM4271718,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATATC: hair cells wt 2C7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271718,GSM4271718: TATATC: hair cells wt 2C7; Danio rerio; RNA Seq,GSM4271718,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271718,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATATC_r1.fq.gz GEO_TATATC_r2.fq.gz,fastq fastq,47552802.0,720497.0,GSM4271718 r1,0:16 1:50,A:13161599;C:9865238;G:10361619;T:14152235;N:12111,16,50,,,13161599,9865238,10361619,14152235,12111,SRX7556519,SRS5993904,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.80675,0.0,0.09336,1.0,0.98466,,0.43652,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System 56173,SRR10887537,SRX7556518,SRS5993903,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GTATAA: hair cells wt 2B12,GSM4271717,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GTATAA: hair cells wt 2B12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271717,GSM4271717: GTATAA: hair cells wt 2B12; Danio rerio; RNA Seq,GSM4271717,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271717,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GTATAA_r1.fq.gz GEO_GTATAA_r2.fq.gz,fastq fastq,105576240.0,1599640.0,GSM4271717 r1,0:16 1:50,A:30487024;C:19765998;G:24257759;T:31040963;N:24496,16,50,,,30487024,19765998,24257759,31040963,24496,SRX7556518,SRS5993903,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.8655,0.0,0.10874,1.0,0.97729,,0.45045,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56174,SRR10887536,SRX7556517,SRS5993902,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GATATA: hair cells wt 2B11,GSM4271716,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GATATA: hair cells wt 2B11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271716,GSM4271716: GATATA: hair cells wt 2B11; Danio rerio; RNA Seq,GSM4271716,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271716,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GATATA_r1.fq.gz GEO_GATATA_r2.fq.gz,fastq fastq,131727882.0,1995877.0,GSM4271716 r1,0:16 1:50,A:39145090;C:25049441;G:28985366;T:38514286;N:33699,16,50,,,39145090,25049441,28985366,38514286,33699,SRX7556517,SRS5993902,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.91406,0.0,0.57766,1.0,0.98425,,0.43543,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56175,SRR10887535,SRX7556516,SRS5993901,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GAAATT: hair cells wt 2B10,GSM4271715,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GAAATT: hair cells wt 2B10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271715,GSM4271715: GAAATT: hair cells wt 2B10; Danio rerio; RNA Seq,GSM4271715,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271715,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GAAATT_r1.fq.gz GEO_GAAATT_r2.fq.gz,fastq fastq,33507144.0,507684.0,GSM4271715 r1,0:16 1:50,A:9768700;C:6465594;G:7741672;T:9522644;N:8534,16,50,,,9768700,6465594,7741672,9522644,8534,SRX7556516,SRS5993901,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.7961,0.0,0.12613,1.0,0.98169,,0.50881,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56176,SRR10887534,SRX7556515,SRS5993908,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CTATTA: hair cells wt 2B9,GSM4271714,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CTATTA: hair cells wt 2B9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271714,GSM4271714: CTATTA: hair cells wt 2B9; Danio rerio; RNA Seq,GSM4271714,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271714,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CTATTA_r1.fq.gz GEO_CTATTA_r2.fq.gz,fastq fastq,48644112.0,737032.0,GSM4271714 r1,0:16 1:50,A:13431743;C:10100159;G:10510510;T:14590743;N:10957,16,50,,,13431743,10100159,10510510,14590743,10957,SRX7556515,SRS5993908,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.82941,0.0,0.09209,1.0,0.98171,,0.48275,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56177,SRR10887533,SRX7556514,SRS5993913,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CATTTA: hair cells wt 2B8,GSM4271713,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CATTTA: hair cells wt 2B8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271713,GSM4271713: CATTTA: hair cells wt 2B8; Danio rerio; RNA Seq,GSM4271713,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271713,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CATTTA_r1.fq.gz GEO_CATTTA_r2.fq.gz,fastq fastq,149976486.0,2272371.0,GSM4271713 r1,0:16 1:50,A:42208515;C:30318978;G:31462869;T:45953123;N:33001,16,50,,,42208515,30318978,31462869,45953123,33001,SRX7556514,SRS5993913,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.87297,0.0,0.07359,1.0,0.97839,,0.41133,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56178,SRR10887532,SRX7556513,SRS5993900,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,CAATAA: hair cells wt 2B7,GSM4271712,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,CAATAA: hair cells wt 2B7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271712,GSM4271712: CAATAA: hair cells wt 2B7; Danio rerio; RNA Seq,GSM4271712,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271712,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_CAATAA_r1.fq.gz GEO_CAATAA_r2.fq.gz,fastq fastq,57412542.0,869887.0,GSM4271712 r1,0:16 1:50,A:17908670;C:11429509;G:11963221;T:16094209;N:16933,16,50,,,17908670,11429509,11963221,16094209,16933,SRX7556513,SRS5993900,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.84753,0.0,0.12124,1.0,0.98427,,0.40643,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56179,SRR10887531,SRX7556512,SRS5993905,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ATACTT: hair cells wt 2A12,GSM4271711,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ATACTT: hair cells wt 2A12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271711,GSM4271711: ATACTT: hair cells wt 2A12; Danio rerio; RNA Seq,GSM4271711,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271711,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ATACTT_r1.fq.gz GEO_ATACTT_r2.fq.gz,fastq fastq,8651148.0,131078.0,GSM4271711 r1,0:16 1:50,A:2330634;C:1784107;G:2159176;T:2374901;N:2330,16,50,,,2330634,1784107,2159176,2374901,2330,SRX7556512,SRS5993905,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.29454,0.0,0.1535,1.0,0.9865,,0.65013,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56180,SRR10887530,SRX7556511,SRS5993898,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ATAACA: hair cells wt 2A11,GSM4271710,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ATAACA: hair cells wt 2A11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271710,GSM4271710: ATAACA: hair cells wt 2A11; Danio rerio; RNA Seq,GSM4271710,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271710,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ATAACA_r1.fq.gz GEO_ATAACA_r2.fq.gz,fastq fastq,58610706.0,888041.0,GSM4271710 r1,0:16 1:50,A:18014874;C:11661118;G:12339527;T:16578759;N:16428,16,50,,,18014874,11661118,12339527,16578759,16428,SRX7556511,SRS5993898,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81794,0.0,0.0639,1.0,0.98563,,0.46396,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56181,SRR10887529,SRX7556510,SRS5993897,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AGTAAT: hair cells wt 2A10,GSM4271709,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AGTAAT: hair cells wt 2A10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271709,GSM4271709: AGTAAT: hair cells wt 2A10; Danio rerio; RNA Seq,GSM4271709,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271709,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AGTAAT_r1.fq.gz GEO_AGTAAT_r2.fq.gz,fastq fastq,111276594.0,1686009.0,GSM4271709 r1,0:16 1:50,A:32926054;C:20521030;G:24191119;T:33604147;N:34244,16,50,,,32926054,20521030,24191119,33604147,34244,SRX7556510,SRS5993897,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88188,0.0,0.14223,1.0,0.98005,,0.44365,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56182,SRR10887528,SRX7556509,SRS5993896,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ACTTTA: hair cells wt 2A9,GSM4271708,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ACTTTA: hair cells wt 2A9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271708,GSM4271708: ACTTTA: hair cells wt 2A9; Danio rerio; RNA Seq,GSM4271708,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271708,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ACTTTA_r1.fq.gz GEO_ACTTTA_r2.fq.gz,fastq fastq,61468308.0,931338.0,GSM4271708 r1,0:16 1:50,A:17145659;C:12322061;G:13013829;T:18971733;N:15026,16,50,,,17145659,12322061,13013829,18971733,15026,SRX7556509,SRS5993896,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.79407,0.0,0.09895,1.0,0.98313,,0.41971,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56183,SRR10887527,SRX7556508,SRS5993894,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,ACATAA: hair cells wt 2A8,GSM4271707,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,ACATAA: hair cells wt 2A8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271707,GSM4271707: ACATAA: hair cells wt 2A8; Danio rerio; RNA Seq,GSM4271707,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271707,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_ACATAA_r1.fq.gz GEO_ACATAA_r2.fq.gz,fastq fastq,158605656.0,2403116.0,GSM4271707 r1,0:16 1:50,A:49247323;C:32258174;G:34033114;T:43023807;N:43238,16,50,,,49247323,32258174,34033114,43023807,43238,SRX7556508,SRS5993894,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81999,0.0,0.11125,1.0,0.97904,,0.47654,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56184,SRR10887526,SRX7556507,SRS5993899,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,AATTGA: hair cells wt 2A7,GSM4271706,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,AATTGA: hair cells wt 2A7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271706,GSM4271706: AATTGA: hair cells wt 2A7; Danio rerio; RNA Seq,GSM4271706,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271706,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_AATTGA_r1.fq.gz GEO_AATTGA_r2.fq.gz,fastq fastq,51021498.0,773053.0,GSM4271706 r1,0:16 1:50,A:14658299;C:10020932;G:12806777;T:13520360;N:15130,16,50,,,14658299,10020932,12806777,13520360,15130,SRX7556507,SRS5993899,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.5837,0.0,0.13118,1.0,0.98324,,0.53616,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56185,SRR10887525,SRX7556506,SRS5993892,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GGGCTC: hair cells Emx2 mutant 4H5,GSM4271705,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] Emx2 mutant|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GGGCTC: hair cells Emx2 mutant 4H5,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] Emx2 mutant|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271705,GSM4271705: GGGCTC: hair cells Emx2 mutant 4H5; Danio rerio; RNA Seq,GSM4271705,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271705,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GGGCTC_r1.fq.gz GEO_GGGCTC_r2.fq.gz,fastq fastq,14613588.0,221418.0,GSM4271705 r1,0:16 1:50,A:3780247;C:3111579;G:3578982;T:4138632;N:4148,16,50,,,3780247,3111579,3578982,4138632,4148,SRX7556506,SRS5993892,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.79993,0.0,0.32776,1.0,0.98088,,0.70912,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System 56186,SRR10887524,SRX7556505,SRS5993891,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,GGGAGG: hair cells Emx2 mutant 4H4,GSM4271704,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] Emx2 mutant|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GGGAGG: hair cells Emx2 mutant 4H4,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al. 2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11 Ensembl 94 Supplementary files format and content: cell columns and gene rows wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] Emx2 mutant|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271704,GSM4271704: GGGAGG: hair cells Emx2 mutant 4H4; Danio rerio; RNA Seq,GSM4271704,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al. 2018,GEO Accession:GSM4271704,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_GGGAGG_r1.fq.gz GEO_GGGAGG_r2.fq.gz,fastq fastq,34179090.0,517865.0,GSM4271704 r1,0:16 1:50,A:8876876;C:6632469;G:9978089;T:8681433;N:10223,16,50,,,8876876,6632469,9978089,8681433,10223,SRX7556505,SRS5993891,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81313,0.0,0.10872,1.0,0.98048,,0.43457,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Larval,Larval,Lateral Line,Sensory System