rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
33934,SRR30947094,SRX26349630,SRS22874784,SRP537826,PRJNA1171482,TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development,GSE279246,Transcriptome Analysis,Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7  along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA  has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD  and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS  respectively  rare multisystem syndromes  where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD  sCHD  2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD  but not in nsCHD. Detailed characterization of tak1 /  and tab2 /  zebrafish mutants revealed cardiac defects dilated atrium  trabeculation defects  tachycardia and reduced contractility as well as  extracardiac developmental anomalies. RNA sequencing of tak1 /  mutant hearts showed downregulation of genes encoding core cardiac transcription factors  sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules  including ligands of the TGFB/BMP superfamily. Consistent with these findings  CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro  while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion  our data establishes a central role for TAK1 and its upstream regulators in cardiac development and syndromic CHD  coordinated via the primary cilium. Overall design: To investigate the function of tak1 in heart development  we created a zebrafish mutant using CRISPR cas9. Three groups of hearts from 3 dpf tak1 /  and tak1+/+ zebrafish larvae 15 hearts of each genotype respectively were extracted as previously described PMID 25651299 and RNAseq was used to compare the transcription profile between mutant and wild type.,,,,whole heart  tak1+/+ wild type  replicate #3,GSM8565205,,source name:Whole heart  3 dpf|tissue:Whole heart  3 dpf|genotype:tak1+/+|geo loc name:missing|collection date:missing,whole heart  tak1+/+ wild type  replicate #3,post quality filtering  reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50%  average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id  NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM.,Whole heart  3 dpf,,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,tissue:Whole heart  3 dpf|genotype:tak1+/+,GSM8565205,GSM8565205: whole heart  tak1+/+ wild type  replicate #3; Danio rerio; RNA Seq,GSM8565205 r1,GSM8565205,1,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP537826,,,WT_3_1.fq.gz WT_3_2.fq.gz,fastq fastq,4449566200.0,22247831.0,GSM8565205 r1,0:100 1:100,A:1179341017;C:1046638560;G:1046356098;T:1177230525;N:0,100,100,,,1179341017,1046638560,1046356098,1177230525,0,SRX26349630,SRS22874784,SRA1990217,"Department of Cellular and Molecular Medicine, University of Copenhagen","Department of Cellular and Molecular Medicine, University of Copenhagen",,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,bulk,bulk,,Denmark,2024-10-10,Larval,Larval,Heart,Cardiovascular System
33935,SRR30947095,SRX26349629,SRS22874783,SRP537826,PRJNA1171482,TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development,GSE279246,Transcriptome Analysis,Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7  along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA  has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD  and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS  respectively  rare multisystem syndromes  where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD  sCHD  2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD  but not in nsCHD. Detailed characterization of tak1 /  and tab2 /  zebrafish mutants revealed cardiac defects dilated atrium  trabeculation defects  tachycardia and reduced contractility as well as  extracardiac developmental anomalies. RNA sequencing of tak1 /  mutant hearts showed downregulation of genes encoding core cardiac transcription factors  sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules  including ligands of the TGFB/BMP superfamily. Consistent with these findings  CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro  while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion  our data establishes a central role for TAK1 and its upstream regulators in cardiac development and syndromic CHD  coordinated via the primary cilium. Overall design: To investigate the function of tak1 in heart development  we created a zebrafish mutant using CRISPR cas9. Three groups of hearts from 3 dpf tak1 /  and tak1+/+ zebrafish larvae 15 hearts of each genotype respectively were extracted as previously described PMID 25651299 and RNAseq was used to compare the transcription profile between mutant and wild type.,,,,whole heart  tak1+/+ wild type  replicate #2,GSM8565204,,source name:Whole heart  3 dpf|tissue:Whole heart  3 dpf|genotype:tak1+/+|geo loc name:missing|collection date:missing,whole heart  tak1+/+ wild type  replicate #2,post quality filtering  reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50%  average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id  NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM.,Whole heart  3 dpf,,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,tissue:Whole heart  3 dpf|genotype:tak1+/+,GSM8565204,GSM8565204: whole heart  tak1+/+ wild type  replicate #2; Danio rerio; RNA Seq,GSM8565204 r1,GSM8565204,1,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP537826,,,WT_2_1.fq.gz WT_2_2.fq.gz,fastq fastq,4519627600.0,22598138.0,GSM8565204 r1,0:100 1:100,A:1207344552;C:1055139553;G:1056806709;T:1200336786;N:0,100,100,,,1207344552,1055139553,1056806709,1200336786,0,SRX26349629,SRS22874783,SRA1990217,"Department of Cellular and Molecular Medicine, University of Copenhagen","Department of Cellular and Molecular Medicine, University of Copenhagen",,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,bulk,bulk,,Denmark,2024-10-10,Larval,Larval,Heart,Cardiovascular System
33936,SRR30947096,SRX26349628,SRS22874781,SRP537826,PRJNA1171482,TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development,GSE279246,Transcriptome Analysis,Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7  along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA  has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD  and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS  respectively  rare multisystem syndromes  where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD  sCHD  2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD  but not in nsCHD. Detailed characterization of tak1 /  and tab2 /  zebrafish mutants revealed cardiac defects dilated atrium  trabeculation defects  tachycardia and reduced contractility as well as  extracardiac developmental anomalies. RNA sequencing of tak1 /  mutant hearts showed downregulation of genes encoding core cardiac transcription factors  sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules  including ligands of the TGFB/BMP superfamily. Consistent with these findings  CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro  while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion  our data establishes a central role for TAK1 and its upstream regulators in cardiac development and syndromic CHD  coordinated via the primary cilium. Overall design: To investigate the function of tak1 in heart development  we created a zebrafish mutant using CRISPR cas9. Three groups of hearts from 3 dpf tak1 /  and tak1+/+ zebrafish larvae 15 hearts of each genotype respectively were extracted as previously described PMID 25651299 and RNAseq was used to compare the transcription profile between mutant and wild type.,,,,whole heart  tak1+/+ wild type  replicate #1,GSM8565203,,source name:Whole heart  3 dpf|tissue:Whole heart  3 dpf|genotype:tak1+/+|geo loc name:missing|collection date:missing,whole heart  tak1+/+ wild type  replicate #1,post quality filtering  reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50%  average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id  NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM.,Whole heart  3 dpf,,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,tissue:Whole heart  3 dpf|genotype:tak1+/+,GSM8565203,GSM8565203: whole heart  tak1+/+ wild type  replicate #1; Danio rerio; RNA Seq,GSM8565203 r1,GSM8565203,1,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP537826,,,WT_1_1.fq.gz WT_1_2.fq.gz,fastq fastq,4496601200.0,22483006.0,GSM8565203 r1,0:100 1:100,A:1201390946;C:1050348674;G:1051355386;T:1193506194;N:0,100,100,,,1201390946,1050348674,1051355386,1193506194,0,SRX26349628,SRS22874781,SRA1990217,"Department of Cellular and Molecular Medicine, University of Copenhagen","Department of Cellular and Molecular Medicine, University of Copenhagen",,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,bulk,bulk,,Denmark,2024-10-10,Larval,Larval,Heart,Cardiovascular System
33937,SRR30947097,SRX26349627,SRS22874780,SRP537826,PRJNA1171482,TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development,GSE279246,Transcriptome Analysis,Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7  along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA  has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD  and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS  respectively  rare multisystem syndromes  where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD  sCHD  2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD  but not in nsCHD. Detailed characterization of tak1 /  and tab2 /  zebrafish mutants revealed cardiac defects dilated atrium  trabeculation defects  tachycardia and reduced contractility as well as  extracardiac developmental anomalies. RNA sequencing of tak1 /  mutant hearts showed downregulation of genes encoding core cardiac transcription factors  sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules  including ligands of the TGFB/BMP superfamily. Consistent with these findings  CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro  while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion  our data establishes a central role for TAK1 and its upstream regulators in cardiac development and syndromic CHD  coordinated via the primary cilium. Overall design: To investigate the function of tak1 in heart development  we created a zebrafish mutant using CRISPR cas9. Three groups of hearts from 3 dpf tak1 /  and tak1+/+ zebrafish larvae 15 hearts of each genotype respectively were extracted as previously described PMID 25651299 and RNAseq was used to compare the transcription profile between mutant and wild type.,,,,whole heart  tak1 /  mutant  replicate #3,GSM8565202,,source name:Whole heart  3 dpf|tissue:Whole heart  3 dpf|genotype:tak1 / |geo loc name:missing|collection date:missing,whole heart  tak1 /  mutant  replicate #3,post quality filtering  reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50%  average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id  NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM.,Whole heart  3 dpf,,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,tissue:Whole heart  3 dpf|genotype:tak1 / ,GSM8565202,GSM8565202: whole heart  tak1 /  mutant  replicate #3; Danio rerio; RNA Seq,GSM8565202 r1,GSM8565202,1,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP537826,,,mut_3_1.fq.gz mut_3_2.fq.gz,fastq fastq,4451759600.0,22258798.0,GSM8565202 r1,0:100 1:100,A:1167798041;C:1064608876;G:1066460994;T:1152891689;N:0,100,100,,,1167798041,1064608876,1066460994,1152891689,0,SRX26349627,SRS22874780,SRA1990217,"Department of Cellular and Molecular Medicine, University of Copenhagen","Department of Cellular and Molecular Medicine, University of Copenhagen",,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,bulk,bulk,,Denmark,2024-10-10,Larval,Larval,Heart,Cardiovascular System
33938,SRR30947098,SRX26349626,SRS22874782,SRP537826,PRJNA1171482,TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development,GSE279246,Transcriptome Analysis,Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7  along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA  has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD  and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS  respectively  rare multisystem syndromes  where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD  sCHD  2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD  but not in nsCHD. Detailed characterization of tak1 /  and tab2 /  zebrafish mutants revealed cardiac defects dilated atrium  trabeculation defects  tachycardia and reduced contractility as well as  extracardiac developmental anomalies. RNA sequencing of tak1 /  mutant hearts showed downregulation of genes encoding core cardiac transcription factors  sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules  including ligands of the TGFB/BMP superfamily. Consistent with these findings  CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro  while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion  our data establishes a central role for TAK1 and its upstream regulators in cardiac development and syndromic CHD  coordinated via the primary cilium. Overall design: To investigate the function of tak1 in heart development  we created a zebrafish mutant using CRISPR cas9. Three groups of hearts from 3 dpf tak1 /  and tak1+/+ zebrafish larvae 15 hearts of each genotype respectively were extracted as previously described PMID 25651299 and RNAseq was used to compare the transcription profile between mutant and wild type.,,,,whole heart  tak1 /  mutant  replicate #2,GSM8565201,,source name:Whole heart  3 dpf|tissue:Whole heart  3 dpf|genotype:tak1 / |geo loc name:missing|collection date:missing,whole heart  tak1 /  mutant  replicate #2,post quality filtering  reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50%  average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id  NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM.,Whole heart  3 dpf,,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,tissue:Whole heart  3 dpf|genotype:tak1 / ,GSM8565201,GSM8565201: whole heart  tak1 /  mutant  replicate #2; Danio rerio; RNA Seq,GSM8565201 r1,GSM8565201,1,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP537826,,,mut_2_1.fq.gz mut_2_2.fq.gz,fastq fastq,4534495200.0,22672476.0,GSM8565201 r1,,,,,,,,,,,,SRX26349626,SRS22874782,SRA1990217,"Department of Cellular and Molecular Medicine, University of Copenhagen","Department of Cellular and Molecular Medicine, University of Copenhagen",,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,bulk,bulk,,Denmark,2024-10-10,Larval,Larval,Heart,Cardiovascular System
33939,SRR30947099,SRX26349625,SRS22874779,SRP537826,PRJNA1171482,TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development,GSE279246,Transcriptome Analysis,Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7  along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA  has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD  and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS  respectively  rare multisystem syndromes  where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD  sCHD  2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD  but not in nsCHD. Detailed characterization of tak1 /  and tab2 /  zebrafish mutants revealed cardiac defects dilated atrium  trabeculation defects  tachycardia and reduced contractility as well as  extracardiac developmental anomalies. RNA sequencing of tak1 /  mutant hearts showed downregulation of genes encoding core cardiac transcription factors  sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules  including ligands of the TGFB/BMP superfamily. Consistent with these findings  CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro  while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion  our data establishes a central role for TAK1 and its upstream regulators in cardiac development and syndromic CHD  coordinated via the primary cilium. Overall design: To investigate the function of tak1 in heart development  we created a zebrafish mutant using CRISPR cas9. Three groups of hearts from 3 dpf tak1 /  and tak1+/+ zebrafish larvae 15 hearts of each genotype respectively were extracted as previously described PMID 25651299 and RNAseq was used to compare the transcription profile between mutant and wild type.,,,,whole heart  tak1 /  mutant  replicate #1,GSM8565200,,source name:Whole heart  3 dpf|tissue:Whole heart  3 dpf|genotype:tak1 / |geo loc name:missing|collection date:missing,whole heart  tak1 /  mutant  replicate #1,post quality filtering  reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50%  average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id  NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM.,Whole heart  3 dpf,,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,tissue:Whole heart  3 dpf|genotype:tak1 / ,GSM8565200,GSM8565200: whole heart  tak1 /  mutant  replicate #1; Danio rerio; RNA Seq,GSM8565200 r1,GSM8565200,1,RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI  China. Samples were paired end sequenced using the DNBSEQ platform.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP537826,,,mut_1_1.fq.gz mut_1_2.fq.gz,fastq fastq,4425052600.0,22125263.0,GSM8565200 r1,0:100 1:100,A:1161989932;C:1055452567;G:1055912540;T:1151697561;N:0,100,100,,,1161989932,1055452567,1055912540,1151697561,0,SRX26349625,SRS22874779,SRA1990217,"Department of Cellular and Molecular Medicine, University of Copenhagen","Department of Cellular and Molecular Medicine, University of Copenhagen",,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,bulk,bulk,,Denmark,2024-10-10,Larval,Larval,Heart,Cardiovascular System
34987,SRR32942209,SRX28216558,SRS24541720,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023364BR L01 read.T1 C1.part 004,DP8400023364BR L01 read.T1 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023364BR_L01_read.part_004_1.fq.gz DP8400023364BR_L01_read.part_004_2.fq.gz,fastq fastq,123077427480.0,911684648.0,DP8400023364BR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216558,SRS24541720,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34988,SRR32942163,SRX28216557,SRS24541723,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023362BR L01 read.T7 C2.part 004,DP8400023362BR L01 read.T7 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023362BR_L01_read.part_004_1.fq.gz DP8400023362BR_L01_read.part_004_2.fq.gz,fastq fastq,107293454415.0,794766329.0,DP8400023362BR L01 read.part 004 1.fq.gz,0:35 1:100,A:31376398573;C:25690917149;G:24154317375;T:26069613878;N:2207440,35,100,,,31376398573,25690917149,24154317375,26069613878,2207440,SRX28216557,SRS24541723,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34989,SRR32942164,SRX28216556,SRS24541723,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023361BR L01 read.T7 C1.part 004,DP8400023361BR L01 read.T7 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023361BR_L01_read.part_004_1.fq.gz DP8400023361BR_L01_read.part_004_2.fq.gz,fastq fastq,73541011590.0,544748234.0,DP8400023361BR L01 read.part 004 1.fq.gz,0:35 1:100,A:21245841948;C:17695592198;G:16579296946;T:18018318788;N:1961710,35,100,,,21245841948,17695592198,16579296946,18018318788,1961710,SRX28216556,SRS24541723,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34990,SRR32942165,SRX28216555,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018806BL L01 read.DP8400016191TL D2.part 004,DP8400018806BL L01 read.DP8400016191TL D2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018806BL_L01_read.part_004_1.fq.gz DP8400018806BL_L01_read.part_004_2.fq.gz,fastq fastq,55082417580.0,408017908.0,DP8400018806BL L01 read.part 004 1.fq.gz,0:35 1:100,A:13778227671;C:14713292408;G:13807456331;T:12779522494;N:3918676,35,100,,,13778227671,14713292408,13807456331,12779522494,3918676,SRX28216555,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34991,SRR32942166,SRX28216554,SRS24541719,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 28 dpa heart,,strain:not applicable|dev stage:28 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 28 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022484TL L01 read.T8 C3.part 004,DP8400022484TL L01 read.T8 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022484TL_L01_read.part_004_1.fq.gz DP8400022484TL_L01_read.part_004_2.fq.gz,fastq fastq,132532472295.0,981722017.0,DP8400022484TL L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216554,SRS24541719,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34992,SRR32942167,SRX28216553,SRS24541721,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3 dpa heart,,strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022389BL L01 read.T5 C2.part 004,DP8400022389BL L01 read.T5 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022389BL_L01_read.part_004_1.fq.gz DP8400022389BL_L01_read.part_004_2.fq.gz,fastq fastq,104447005335.0,773681521.0,DP8400022389BL L01 read.part 004 1.fq.gz,0:35 1:100,A:27343177960;C:27134625733;G:25518535252;T:24448625683;N:2040707,35,100,,,27343177960,27134625733,25518535252,24448625683,2040707,SRX28216553,SRS24541721,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34993,SRR32942168,SRX28216552,SRS24541722,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022386BL L01 read.T2 C1.part 004,DP8400022386BL L01 read.T2 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022386BL_L01_read.part_004_1.fq.gz DP8400022386BL_L01_read.part_004_2.fq.gz,fastq fastq,133549992405.0,989259203.0,DP8400022386BL L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216552,SRS24541722,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34994,SRR32942169,SRX28216551,SRS24541717,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 1 dpa heart,,strain:not applicable|dev stage:1 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 1 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022382TR L01 read.T4 C1.part 004,DP8400022382TR L01 read.T4 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022382TR_L01_read.part_004_1.fq.gz DP8400022382TR_L01_read.part_004_2.fq.gz,fastq fastq,117481461480.0,870233048.0,DP8400022382TR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216551,SRS24541717,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34995,SRR32942170,SRX28216550,SRS24541717,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 1 dpa heart,,strain:not applicable|dev stage:1 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 1 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022381TR L01 read.T4 C2.part 004,DP8400022381TR L01 read.T4 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022381TR_L01_read.part_004_1.fq.gz DP8400022381TR_L01_read.part_004_2.fq.gz,fastq fastq,115488770760.0,855472376.0,DP8400022381TR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216550,SRS24541717,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34996,SRR32942171,SRX28216549,SRS24541722,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022380TR L01 read.T2 C2.part 004,DP8400022380TR L01 read.T2 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022380TR_L01_read.part_004_1.fq.gz DP8400022380TR_L01_read.part_004_2.fq.gz,fastq fastq,113741885745.0,842532487.0,DP8400022380TR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216549,SRS24541722,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34997,SRR32942172,SRX28216548,SRS24541722,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022379TR L01 read.T2 C3.part 004,DP8400022379TR L01 read.T2 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022379TR_L01_read.part_004_1.fq.gz DP8400022379TR_L01_read.part_004_2.fq.gz,fastq fastq,122405973930.0,906710918.0,DP8400022379TR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216548,SRS24541722,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34998,SRR32942173,SRX28216547,SRS24541721,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3 dpa heart,,strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022378TR L01 read.T5 C1.part 004,DP8400022378TR L01 read.T5 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022378TR_L01_read.part_004_1.fq.gz DP8400022378TR_L01_read.part_004_2.fq.gz,fastq fastq,111214895535.0,823814041.0,DP8400022378TR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216547,SRS24541721,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
34999,SRR32942174,SRX28216546,SRS24541718,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 7 dpa heart,,strain:not applicable|dev stage:7 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 7 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022137TL L01 read.T6 C2.part 004,DP8400022137TL L01 read.T6 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022137TL_L01_read.part_004_1.fq.gz DP8400022137TL_L01_read.part_004_2.fq.gz,fastq fastq,119483176815.0,885060569.0,DP8400022137TL L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216546,SRS24541718,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35000,SRR32942175,SRX28216545,SRS24541718,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 7 dpa heart,,strain:not applicable|dev stage:7 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 7 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022136TL L01 read.T6 C1.part 004,DP8400022136TL L01 read.T6 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022136TL_L01_read.part_004_1.fq.gz DP8400022136TL_L01_read.part_004_2.fq.gz,fastq fastq,129016315215.0,955676409.0,DP8400022136TL L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216545,SRS24541718,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35001,SRR32942176,SRX28216544,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018805BL L01 read.DP8400016191TL D3.part 004,DP8400018805BL L01 read.DP8400016191TL D3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018805BL_L01_read.part_004_1.fq.gz DP8400018805BL_L01_read.part_004_2.fq.gz,fastq fastq,61237875690.0,453613894.0,DP8400018805BL L01 read.part 004 1.fq.gz,0:35 1:100,A:15070939100;C:16649524218;G:15610652660;T:13904423716;N:2335996,35,100,,,15070939100,16649524218,15610652660,13904423716,2335996,SRX28216544,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35002,SRR32942177,SRX28216543,SRS24541720,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022030BR L01 read.T1 C3.part 004,DP8400022030BR L01 read.T1 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022030BR_L01_read.part_004_1.fq.gz DP8400022030BR_L01_read.part_004_2.fq.gz,fastq fastq,109611340155.0,811935853.0,DP8400022030BR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216543,SRS24541720,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35003,SRR32942178,SRX28216542,SRS24541720,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022029BR L01 read.T1 C2.part 004,DP8400022029BR L01 read.T1 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022029BR_L01_read.part_004_1.fq.gz DP8400022029BR_L01_read.part_004_2.fq.gz,fastq fastq,118325133180.0,876482468.0,DP8400022029BR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216542,SRS24541720,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35004,SRR32942179,SRX28216541,SRS24541719,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 28 dpa heart,,strain:not applicable|dev stage:28 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 28 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400022027BR L01 read.T8 C2.part 004,DP8400022027BR L01 read.T8 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400022027BR_L01_read.part_004_1.fq.gz DP8400022027BR_L01_read.part_004_2.fq.gz,fastq fastq,146070775035.0,1082005741.0,DP8400022027BR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216541,SRS24541719,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35005,SRR32942180,SRX28216540,SRS24541718,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 7 dpa heart,,strain:not applicable|dev stage:7 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 7 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400020219TR L01 read.T6 C3.part 004,DP8400020219TR L01 read.T6 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400020219TR_L01_read.part_004_1.fq.gz DP8400020219TR_L01_read.part_004_2.fq.gz,fastq fastq,108702511785.0,805203791.0,DP8400020219TR L01 read.part 004 1.fq.gz,0:35 1:100,A:30924612973;C:26615396197;G:25679719315;T:25478921953;N:3861347,35,100,,,30924612973,26615396197,25679719315,25478921953,3861347,SRX28216540,SRS24541718,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35006,SRR32942181,SRX28216539,SRS24541717,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 1 dpa heart,,strain:not applicable|dev stage:1 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 1 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400020217TR L01 read.T4 C3.part 004,DP8400020217TR L01 read.T4 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400020217TR_L01_read.part_004_1.fq.gz DP8400020217TR_L01_read.part_004_2.fq.gz,fastq fastq,116478470205.0,862803483.0,DP8400020217TR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216539,SRS24541717,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35007,SRR32942182,SRX28216538,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019890BR L01 read.DP8400016191TL F5.part 004,DP8400019890BR L01 read.DP8400016191TL F5.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019890BR_L01_read.part_004_1.fq.gz DP8400019890BR_L01_read.part_004_2.fq.gz,fastq fastq,67687161435.0,501386381.0,DP8400019890BR L01 read.part 004 1.fq.gz,0:35 1:100,A:16750303312;C:18443583451;G:17234547138;T:15246774478;N:11953056,35,100,,,16750303312,18443583451,17234547138,15246774478,11953056,SRX28216538,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35008,SRR32942183,SRX28216537,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019889BR L01 read.DP8400016191TL F4.part 004,DP8400019889BR L01 read.DP8400016191TL F4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019889BR_L01_read.part_004_1.fq.gz DP8400019889BR_L01_read.part_004_2.fq.gz,fastq fastq,69163211475.0,512320085.0,DP8400019889BR L01 read.part 004 1.fq.gz,0:35 1:100,A:17200140488;C:18673099081;G:17606169239;T:15671289795;N:12512872,35,100,,,17200140488,18673099081,17606169239,15671289795,12512872,SRX28216537,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35009,SRR32942184,SRX28216536,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019888BR L01 read.DP8400016191TL F4.part 004,DP8400019888BR L01 read.DP8400016191TL F4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019888BR_L01_read.part_004_1.fq.gz DP8400019888BR_L01_read.part_004_2.fq.gz,fastq fastq,70870768695.0,524968657.0,DP8400019888BR L01 read.part 004 1.fq.gz,0:35 1:100,A:17716788507;C:19102464363;G:18005274901;T:16020272244;N:25968680,35,100,,,17716788507,19102464363,18005274901,16020272244,25968680,SRX28216536,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35010,SRR32942185,SRX28216535,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019887BR L01 read.DP8400016191TL F3.part 004,DP8400019887BR L01 read.DP8400016191TL F3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019887BR_L01_read.part_004_1.fq.gz DP8400019887BR_L01_read.part_004_2.fq.gz,fastq fastq,71573376465.0,530173159.0,DP8400019887BR L01 read.part 004 1.fq.gz,0:35 1:100,A:17781506777;C:19377727002;G:18235954033;T:16172068644;N:6120009,35,100,,,17781506777,19377727002,18235954033,16172068644,6120009,SRX28216535,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35011,SRR32942186,SRX28216534,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019886BR L01 read.DP8400016191TL F3.part 004,DP8400019886BR L01 read.DP8400016191TL F3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019886BR_L01_read.part_004_1.fq.gz DP8400019886BR_L01_read.part_004_2.fq.gz,fastq fastq,60759942480.0,450073648.0,DP8400019886BR L01 read.part 004 1.fq.gz,0:35 1:100,A:15019834483;C:16492456759;G:15444767358;T:13801185069;N:1698811,35,100,,,15019834483,16492456759,15444767358,13801185069,1698811,SRX28216534,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35012,SRR32942187,SRX28216533,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018804BL L01 read.DP8400016191TL D3.part 004,DP8400018804BL L01 read.DP8400016191TL D3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018804BL_L01_read.part_004_1.fq.gz DP8400018804BL_L01_read.part_004_2.fq.gz,fastq fastq,56526607215.0,418715609.0,DP8400018804BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14017626841;C:15298341903;G:14347464111;T:12860461394;N:2712966,35,100,,,14017626841,15298341903,14347464111,12860461394,2712966,SRX28216533,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35013,SRR32942188,SRX28216532,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019885BR L01 read.DP8400016191TL F2.part 004,DP8400019885BR L01 read.DP8400016191TL F2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019885BR_L01_read.part_004_1.fq.gz DP8400019885BR_L01_read.part_004_2.fq.gz,fastq fastq,67347176220.0,498867972.0,DP8400019885BR L01 read.part 004 1.fq.gz,0:35 1:100,A:16412099606;C:18498396843;G:17097251953;T:15337745292;N:1682526,35,100,,,16412099606,18498396843,17097251953,15337745292,1682526,SRX28216532,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35014,SRR32942189,SRX28216531,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019858TR L01 read.DP8400016191TL F2.part 004,DP8400019858TR L01 read.DP8400016191TL F2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019858TR_L01_read.part_004_1.fq.gz DP8400019858TR_L01_read.part_004_2.fq.gz,fastq fastq,73055162385.0,541149351.0,DP8400019858TR L01 read.part 004 1.fq.gz,0:35 1:100,A:17703615246;C:20135810722;G:18500467259;T:16713796960;N:1472198,35,100,,,17703615246,20135810722,18500467259,16713796960,1472198,SRX28216531,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35015,SRR32942190,SRX28216530,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018977BR L01 read.DP8400016191TL E1.part 004,DP8400018977BR L01 read.DP8400016191TL E1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018977BR_L01_read.part_004_1.fq.gz DP8400018977BR_L01_read.part_004_2.fq.gz,fastq fastq,59614832385.0,441591351.0,DP8400018977BR L01 read.part 004 1.fq.gz,0:35 1:100,A:14519744788;C:16428569581;G:15093422657;T:13571913895;N:1181464,35,100,,,14519744788,16428569581,15093422657,13571913895,1181464,SRX28216530,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35016,SRR32942192,SRX28216529,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018976BR L01 read.DP8400016191TL D6.part 004,DP8400018976BR L01 read.DP8400016191TL D6.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018976BR_L01_read.part_004_1.fq.gz DP8400018976BR_L01_read.part_004_2.fq.gz,fastq fastq,54281520360.0,402085336.0,DP8400018976BR L01 read.part 004 1.fq.gz,0:35 1:100,A:13404908415;C:14822868550;G:13663907351;T:12386919816;N:2916228,35,100,,,13404908415,14822868550,13663907351,12386919816,2916228,SRX28216529,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35017,SRR32942193,SRX28216528,SRS24507289,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 33.sc 6hpa lib3 cDNA.part 004,FP200007602 L01 33.sc 6hpa lib3 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_33.part_004_1.fq.gz FP200007602_L01_33.part_004_2.fq.gz,fastq fastq,52774563270.0,405958179.0,FP200007602 L01 33.part 004 1.fq.gz,0:30 1:100,A:14255454446;C:11937740507;G:12321730613;T:14259154459;N:483245,30,100,,,14255454446,11937740507,12321730613,14259154459,483245,SRX28216528,SRS24507289,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35018,SRR32942194,SRX28216527,SRS24507289,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 32.sc 6hpa lib2 cDNA.part 004,FP200007602 L01 32.sc 6hpa lib2 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_32.part_004_1.fq.gz FP200007602_L01_32.part_004_2.fq.gz,fastq fastq,49836891130.0,383360701.0,FP200007602 L01 32.part 004 1.fq.gz,0:30 1:100,A:13527273550;C:11075970476;G:11486011805;T:13747199019;N:436280,30,100,,,13527273550,11075970476,11486011805,13747199019,436280,SRX28216527,SRS24507289,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35019,SRR32942195,SRX28216526,SRS24507289,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 31.sc 6hpa lib1 cDNA.part 004,FP200007602 L01 31.sc 6hpa lib1 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_31.part_004_1.fq.gz FP200007602_L01_31.part_004_2.fq.gz,fastq fastq,45283656990.0,348335823.0,FP200007602 L01 31.part 004 1.fq.gz,0:30 1:100,A:12219395392;C:10086116075;G:10507331482;T:12470509810;N:304231,30,100,,,12219395392,10086116075,10507331482,12470509810,304231,SRX28216526,SRS24507289,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35020,SRR32942196,SRX28216525,SRS24507288,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 30.sc 14dpa lib3 cDNA.part 004,FP200007602 L01 30.sc 14dpa lib3 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_30.part_004_1.fq.gz FP200007602_L01_30.part_004_2.fq.gz,fastq fastq,51741663350.0,398012795.0,FP200007602 L01 30.part 004 1.fq.gz,0:30 1:100,A:14033851692;C:11617438535;G:11916304345;T:14173733846;N:334932,30,100,,,14033851692,11617438535,11916304345,14173733846,334932,SRX28216525,SRS24507288,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35021,SRR32942197,SRX28216524,SRS24507288,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 29.sc 14dpa lib2 cDNA.part 004,FP200007602 L01 29.sc 14dpa lib2 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_29.part_004_1.fq.gz FP200007602_L01_29.part_004_2.fq.gz,fastq fastq,54600571090.0,420004393.0,FP200007602 L01 29.part 004 1.fq.gz,0:30 1:100,A:14772829760;C:12292232249;G:12802221982;T:14732811472;N:475627,30,100,,,14772829760,12292232249,12802221982,14732811472,475627,SRX28216524,SRS24507288,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35022,SRR32942198,SRX28216523,SRS24507288,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 28.sc 14dpa lib1 cDNA.part 004,FP200007602 L01 28.sc 14dpa lib1 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_28.part_004_1.fq.gz FP200007602_L01_28.part_004_2.fq.gz,fastq fastq,53296161360.0,409970472.0,FP200007602 L01 28.part 004 1.fq.gz,0:30 1:100,A:14349566822;C:12164232434;G:12495328148;T:14286654669;N:379287,30,100,,,14349566822,12164232434,12495328148,14286654669,379287,SRX28216523,SRS24507288,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35023,SRR32942199,SRX28216522,SRS24507279,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 27.sc uninjured lib6 cDNA.part 004,FP200007602 L01 27.sc uninjured lib6 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_27.part_004_1.fq.gz FP200007602_L01_27.part_004_2.fq.gz,fastq fastq,40810493360.0,313926872.0,FP200007602 L01 27.part 004 1.fq.gz,0:30 1:100,A:11162512232;C:8919671826;G:9446668017;T:11281364211;N:277074,30,100,,,11162512232,8919671826,9446668017,11281364211,277074,SRX28216522,SRS24507279,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35024,SRR32942200,SRX28216521,SRS24507279,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 26.sc uninjured lib5 cDNA.part 004,FP200007602 L01 26.sc uninjured lib5 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_26.part_004_1.fq.gz FP200007602_L01_26.part_004_2.fq.gz,fastq fastq,48055989410.0,369661457.0,FP200007602 L01 26.part 004 1.fq.gz,0:30 1:100,A:13067367682;C:10607543012;G:11223724089;T:13157002276;N:352351,30,100,,,13067367682,10607543012,11223724089,13157002276,352351,SRX28216521,SRS24507279,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35025,SRR32942201,SRX28216520,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018807BL L01 read.DP8400016191TL E3.part 004,DP8400018807BL L01 read.DP8400016191TL E3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018807BL_L01_read.part_004_1.fq.gz DP8400018807BL_L01_read.part_004_2.fq.gz,fastq fastq,61323618375.0,454249025.0,DP8400018807BL L01 read.part 004 1.fq.gz,0:35 1:100,A:15248637921;C:16583252300;G:15380701071;T:14109458926;N:1568157,35,100,,,15248637921,16583252300,15380701071,14109458926,1568157,SRX28216520,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35026,SRR32942202,SRX28216519,SRS24507279,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 25.sc uninjured lib4 cDNA.part 004,FP200007602 L01 25.sc uninjured lib4 cDNA.part 004,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_25.part_004_1.fq.gz FP200007602_L01_25.part_004_2.fq.gz,fastq fastq,44668626860.0,343604822.0,FP200007602 L01 25.part 004 1.fq.gz,0:30 1:100,A:12037547321;C:9915662719;G:10482017047;T:12232983538;N:416235,30,100,,,12037547321,9915662719,10482017047,12232983538,416235,SRX28216519,SRS24507279,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35027,SRR32942203,SRX28216518,SRS24541724,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 12 hpa heart,,strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023504BL L01 read.T3 C3.part 004,DP8400023504BL L01 read.T3 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023504BL_L01_read.part_004_1.fq.gz DP8400023504BL_L01_read.part_004_2.fq.gz,fastq fastq,111828836655.0,828361753.0,DP8400023504BL L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216518,SRS24541724,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35028,SRR32942204,SRX28216517,SRS24541724,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 12 hpa heart,,strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023503BL L01 read.T3 C2.part 004,DP8400023503BL L01 read.T3 C2.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023503BL_L01_read.part_004_1.fq.gz DP8400023503BL_L01_read.part_004_2.fq.gz,fastq fastq,113313672765.0,839360539.0,DP8400023503BL L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216517,SRS24541724,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35029,SRR32942205,SRX28216516,SRS24541724,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 12 hpa heart,,strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023501BL L01 read.T3 C1.part 004,DP8400023501BL L01 read.T3 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023501BL_L01_read.part_004_1.fq.gz DP8400023501BL_L01_read.part_004_2.fq.gz,fastq fastq,120371892885.0,891643651.0,DP8400023501BL L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216516,SRS24541724,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35030,SRR32942206,SRX28216515,SRS24541721,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3 dpa heart,,strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023368BR L01 read.T5 C3.part 004,DP8400023368BR L01 read.T5 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023368BR_L01_read.part_004_1.fq.gz DP8400023368BR_L01_read.part_004_2.fq.gz,fastq fastq,126180702315.0,934671869.0,DP8400023368BR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216515,SRS24541721,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35031,SRR32942207,SRX28216514,SRS24541719,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 28 dpa heart,,strain:not applicable|dev stage:28 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 28 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023367BR L01 read.T8 C1.part 004,DP8400023367BR L01 read.T8 C1.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023367BR_L01_read.part_004_1.fq.gz DP8400023367BR_L01_read.part_004_2.fq.gz,fastq fastq,150425834670.0,1114265442.0,DP8400023367BR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216514,SRS24541719,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35032,SRR32942208,SRX28216513,SRS24541723,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023365BR L01 read.T7 C3.part 004,DP8400023365BR L01 read.T7 C3.part 004,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023365BR_L01_read.part_004_1.fq.gz DP8400023365BR_L01_read.part_004_2.fq.gz,fastq fastq,108864537705.0,806403983.0,DP8400023365BR L01 read.part 004 1.fq.gz,,,,,,,,,,,,SRX28216513,SRS24541723,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35033,SRR32942191,SRX28216512,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019715TR L01 read.DP8400016191TL E1.part 004,DP8400019715TR L01 read.DP8400016191TL E1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019715TR_L01_read.part_004_1.fq.gz DP8400019715TR_L01_read.part_004_2.fq.gz,fastq fastq,56887229610.0,421386886.0,DP8400019715TR L01 read.part 004 1.fq.gz,0:35 1:100,A:13870712104;C:15595391056;G:14309367543;T:13110498763;N:1260144,35,100,,,13870712104,15595391056,14309367543,13110498763,1260144,SRX28216512,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35034,SRR32942210,SRX28216511,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019714TR L01 read.DP8400016191TL E2.part 004,DP8400019714TR L01 read.DP8400016191TL E2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019714TR_L01_read.part_004_1.fq.gz DP8400019714TR_L01_read.part_004_2.fq.gz,fastq fastq,56375774685.0,417598331.0,DP8400019714TR L01 read.part 004 1.fq.gz,0:35 1:100,A:13803413830;C:15453118314;G:14099656050;T:13018786315;N:800176,35,100,,,13803413830,15453118314,14099656050,13018786315,800176,SRX28216511,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35035,SRR32942211,SRX28216510,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019713TR L01 read.DP8400016191TL E2.part 004,DP8400019713TR L01 read.DP8400016191TL E2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019713TR_L01_read.part_004_1.fq.gz DP8400019713TR_L01_read.part_004_2.fq.gz,fastq fastq,58122189630.0,430534738.0,DP8400019713TR L01 read.part 004 1.fq.gz,0:35 1:100,A:14213774894;C:15888338538;G:14515295010;T:13503534556;N:1246632,35,100,,,14213774894,15888338538,14515295010,13503534556,1246632,SRX28216510,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35036,SRR32942212,SRX28216509,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019712TR L01 read.DP8400016191TL E3.part 004,DP8400019712TR L01 read.DP8400016191TL E3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019712TR_L01_read.part_004_1.fq.gz DP8400019712TR_L01_read.part_004_2.fq.gz,fastq fastq,64191657600.0,475493760.0,DP8400019712TR L01 read.part 004 1.fq.gz,0:35 1:100,A:15909278786;C:17394570578;G:16092725759;T:14794040874;N:1041603,35,100,,,15909278786,17394570578,16092725759,14794040874,1041603,SRX28216509,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35037,SRR32942213,SRX28216508,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019710TR L01 read.DP8400016191TL E4.part 004,DP8400019710TR L01 read.DP8400016191TL E4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019710TR_L01_read.part_004_1.fq.gz DP8400019710TR_L01_read.part_004_2.fq.gz,fastq fastq,60679091790.0,449474754.0,DP8400019710TR L01 read.part 004 1.fq.gz,0:35 1:100,A:15172342484;C:16330220525;G:15097490343;T:14077311462;N:1726976,35,100,,,15172342484,16330220525,15097490343,14077311462,1726976,SRX28216508,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35038,SRR32942214,SRX28216507,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019709TR L01 read.DP8400016191TL E4.part 004,DP8400019709TR L01 read.DP8400016191TL E4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019709TR_L01_read.part_004_1.fq.gz DP8400019709TR_L01_read.part_004_2.fq.gz,fastq fastq,66639731940.0,493627644.0,DP8400019709TR L01 read.part 004 1.fq.gz,0:35 1:100,A:16606912294;C:17977284542;G:16608869027;T:15445680693;N:985384,35,100,,,16606912294,17977284542,16608869027,15445680693,985384,SRX28216507,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35039,SRR32942215,SRX28216506,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019708TR L01 read.DP8400016191TL E5.part 004,DP8400019708TR L01 read.DP8400016191TL E5.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019708TR_L01_read.part_004_1.fq.gz DP8400019708TR_L01_read.part_004_2.fq.gz,fastq fastq,57866361930.0,428639718.0,DP8400019708TR L01 read.part 004 1.fq.gz,0:35 1:100,A:14518123759;C:15559434114;G:14538269216;T:13248792062;N:1742779,35,100,,,14518123759,15559434114,14538269216,13248792062,1742779,SRX28216506,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35040,SRR32942216,SRX28216505,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019707TR L01 read.DP8400016191TL E5.part 004,DP8400019707TR L01 read.DP8400016191TL E5.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019707TR_L01_read.part_004_1.fq.gz DP8400019707TR_L01_read.part_004_2.fq.gz,fastq fastq,65725558785.0,486855991.0,DP8400019707TR L01 read.part 004 1.fq.gz,0:35 1:100,A:16371937642;C:17751925189;G:16510484140;T:15089850883;N:1360931,35,100,,,16371937642,17751925189,16510484140,15089850883,1360931,SRX28216505,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35041,SRR32942217,SRX28216504,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018803BL L01 read.DP8400016191TL D4.part 004,DP8400018803BL L01 read.DP8400016191TL D4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018803BL_L01_read.part_004_1.fq.gz DP8400018803BL_L01_read.part_004_2.fq.gz,fastq fastq,58917652560.0,436427056.0,DP8400018803BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14596247471;C:16033305880;G:14761529505;T:13524460641;N:2109063,35,100,,,14596247471,16033305880,14761529505,13524460641,2109063,SRX28216504,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35042,SRR32942218,SRX28216503,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019706TR L01 read.DP8400016191TL E6.part 004,DP8400019706TR L01 read.DP8400016191TL E6.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019706TR_L01_read.part_004_1.fq.gz DP8400019706TR_L01_read.part_004_2.fq.gz,fastq fastq,59035968045.0,437303467.0,DP8400019706TR L01 read.part 004 1.fq.gz,0:35 1:100,A:14937447816;C:15778663559;G:14778860228;T:13539227677;N:1768765,35,100,,,14937447816,15778663559,14778860228,13539227677,1768765,SRX28216503,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35043,SRR32942219,SRX28216502,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019559BL L01 read.DP8400016197TL C1.part 004,DP8400019559BL L01 read.DP8400016197TL C1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019559BL_L01_read.part_004_1.fq.gz DP8400019559BL_L01_read.part_004_2.fq.gz,fastq fastq,56848645395.0,421101077.0,DP8400019559BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14099708260;C:15436492335;G:14445736914;T:12863510055;N:3197831,35,100,,,14099708260,15436492335,14445736914,12863510055,3197831,SRX28216502,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35044,SRR32942220,SRX28216501,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019558BL L01 read.DP8400016197TL C2.part 004,DP8400019558BL L01 read.DP8400016197TL C2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019558BL_L01_read.part_004_1.fq.gz DP8400019558BL_L01_read.part_004_2.fq.gz,fastq fastq,63244384335.0,468476921.0,DP8400019558BL L01 read.part 004 1.fq.gz,0:35 1:100,A:15919772201;C:16882264529;G:15805539449;T:14634620136;N:2188020,35,100,,,15919772201,16882264529,15805539449,14634620136,2188020,SRX28216501,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35045,SRR32942221,SRX28216500,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019557BL L01 read.DP8400016197TL C2.part 004,DP8400019557BL L01 read.DP8400016197TL C2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019557BL_L01_read.part_004_1.fq.gz DP8400019557BL_L01_read.part_004_2.fq.gz,fastq fastq,60407574255.0,447463513.0,DP8400019557BL L01 read.part 004 1.fq.gz,0:35 1:100,A:15296237741;C:16083774145;G:15118450652;T:13906133645;N:2978072,35,100,,,15296237741,16083774145,15118450652,13906133645,2978072,SRX28216500,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35046,SRR32942222,SRX28216499,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019556BL L01 read.DP8400016197TL C3.part 004,DP8400019556BL L01 read.DP8400016197TL C3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019556BL_L01_read.part_004_1.fq.gz DP8400019556BL_L01_read.part_004_2.fq.gz,fastq fastq,52927313625.0,392054175.0,DP8400019556BL L01 read.part 004 1.fq.gz,0:35 1:100,A:12834479906;C:14675308042;G:13372712001;T:12043032938;N:1780738,35,100,,,12834479906,14675308042,13372712001,12043032938,1780738,SRX28216499,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35047,SRR32942223,SRX28216498,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019555BL L01 read.DP8400016197TL C3.part 004,DP8400019555BL L01 read.DP8400016197TL C3.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019555BL_L01_read.part_004_1.fq.gz DP8400019555BL_L01_read.part_004_2.fq.gz,fastq fastq,58336252785.0,432120391.0,DP8400019555BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14149253903;C:16281644985;G:14623244381;T:13280846811;N:1262705,35,100,,,14149253903,16281644985,14623244381,13280846811,1262705,SRX28216498,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,2e-05,0.00339,1e-05,0.00045,1.0,0.99358,,0.55516,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35048,SRR32942224,SRX28216497,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019554BL L01 read.DP8400016197TL C4.part 004,DP8400019554BL L01 read.DP8400016197TL C4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019554BL_L01_read.part_004_1.fq.gz DP8400019554BL_L01_read.part_004_2.fq.gz,fastq fastq,57901639860.0,428901036.0,DP8400019554BL L01 read.part 004 1.fq.gz,0:35 1:100,A:13971374150;C:16205418712;G:14499792932;T:13223641672;N:1412394,35,100,,,13971374150,16205418712,14499792932,13223641672,1412394,SRX28216497,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35049,SRR32942225,SRX28216496,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019149BL L01 read.DP8400016191TL D2.part 004,DP8400019149BL L01 read.DP8400016191TL D2.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019149BL_L01_read.part_004_1.fq.gz DP8400019149BL_L01_read.part_004_2.fq.gz,fastq fastq,70577576910.0,522796866.0,DP8400019149BL L01 read.part 004 1.fq.gz,0:35 1:100,A:17589101826;C:18925687897;G:17618780143;T:16441848073;N:2158971,35,100,,,17589101826,18925687897,17618780143,16441848073,2158971,SRX28216496,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35050,SRR32942226,SRX28216495,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019148BL L01 read.DP8400016191TL D1.part 004,DP8400019148BL L01 read.DP8400016191TL D1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019148BL_L01_read.part_004_1.fq.gz DP8400019148BL_L01_read.part_004_2.fq.gz,fastq fastq,62399847285.0,462221091.0,DP8400019148BL L01 read.part 004 1.fq.gz,0:35 1:100,A:15464876963;C:16961780857;G:15877470346;T:14094212854;N:1506265,35,100,,,15464876963,16961780857,15877470346,14094212854,1506265,SRX28216495,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,1e-05,0.00579,0.0,0.00048,1.0,0.99157,,0.56004,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35051,SRR32942227,SRX28216494,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019147BL L01 read.DP8400016191TL D1.part 004,DP8400019147BL L01 read.DP8400016191TL D1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019147BL_L01_read.part_004_1.fq.gz DP8400019147BL_L01_read.part_004_2.fq.gz,fastq fastq,61109090820.0,452659932.0,DP8400019147BL L01 read.part 004 1.fq.gz,0:35 1:100,A:15153687436;C:16545816882;G:15627412081;T:13780203359;N:1971062,35,100,,,15153687436,16545816882,15627412081,13780203359,1971062,SRX28216494,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,1e-05,0.00446,0.0,0.00044,1.0,0.99297,,0.58792,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35052,SRR32942228,SRX28216493,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018802BL L01 read.DP8400016191TL D4.part 004,DP8400018802BL L01 read.DP8400016191TL D4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018802BL_L01_read.part_004_1.fq.gz DP8400018802BL_L01_read.part_004_2.fq.gz,fastq fastq,56258245710.0,416727746.0,DP8400018802BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14071296795;C:15113672510;G:14240086425;T:12804666622;N:28523358,35,100,,,14071296795,15113672510,14240086425,12804666622,28523358,SRX28216493,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.0,0.02834,0.0,0.00468,1.0,0.97149,,0.52556,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35053,SRR32942229,SRX28216492,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019146BL L01 read.DP8400016191TL C6.part 004,DP8400019146BL L01 read.DP8400016191TL C6.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019146BL_L01_read.part_004_1.fq.gz DP8400019146BL_L01_read.part_004_2.fq.gz,fastq fastq,58947801705.0,436650383.0,DP8400019146BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14473403443;C:16127629210;G:15016338954;T:13328393333;N:2036765,35,100,,,14473403443,16127629210,15016338954,13328393333,2036765,SRX28216492,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,2e-05,0.00122,1e-05,0.00014,1.0,0.99768,,0.5,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35054,SRR32942230,SRX28216491,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019145BL L01 read.DP8400016191TL C6.part 004,DP8400019145BL L01 read.DP8400016191TL C6.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019145BL_L01_read.part_004_1.fq.gz DP8400019145BL_L01_read.part_004_2.fq.gz,fastq fastq,60477314040.0,447980104.0,DP8400019145BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14861942557;C:16529917022;G:15384750292;T:13698531085;N:2173084,35,100,,,14861942557,16529917022,15384750292,13698531085,2173084,SRX28216491,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35055,SRR32942231,SRX28216490,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019086BR L01 read.DP8400016197TL C4.part 004,DP8400019086BR L01 read.DP8400016197TL C4.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019086BR_L01_read.part_004_1.fq.gz DP8400019086BR_L01_read.part_004_2.fq.gz,fastq fastq,63418251375.0,469764825.0,DP8400019086BR L01 read.part 004 1.fq.gz,0:35 1:100,A:15167810702;C:17819808904;G:15876068522;T:14552188503;N:2374744,35,100,,,15167810702,17819808904,15876068522,14552188503,2374744,SRX28216490,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,2e-05,0.00603,1e-05,0.00064,1.0,0.99048,,0.54794,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35056,SRR32942232,SRX28216489,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019085BR L01 read.DP8400016197TL C5.part 004,DP8400019085BR L01 read.DP8400016197TL C5.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019085BR_L01_read.part_004_1.fq.gz DP8400019085BR_L01_read.part_004_2.fq.gz,fastq fastq,59635391670.0,441743642.0,DP8400019085BR L01 read.part 004 1.fq.gz,0:35 1:100,A:14747118720;C:16399073853;G:14975948373;T:13510473168;N:2777556,35,100,,,14747118720,16399073853,14975948373,13510473168,2777556,SRX28216489,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,3e-05,0.00376,2e-05,0.00049,1.0,0.99375,,0.59546,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35057,SRR32942233,SRX28216488,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019084BR L01 read.DP8400016197TL C5.part 004,DP8400019084BR L01 read.DP8400016197TL C5.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019084BR_L01_read.part_004_1.fq.gz DP8400019084BR_L01_read.part_004_2.fq.gz,fastq fastq,73560691080.0,544894008.0,DP8400019084BR L01 read.part 004 1.fq.gz,0:35 1:100,A:17949905952;C:20368196976;G:18524935582;T:16715123340;N:2529230,35,100,,,17949905952,20368196976,18524935582,16715123340,2529230,SRX28216488,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35058,SRR32942234,SRX28216487,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019079BR L01 read.DP8400016191TL F5.part 004,DP8400019079BR L01 read.DP8400016191TL F5.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019079BR_L01_read.part_004_1.fq.gz DP8400019079BR_L01_read.part_004_2.fq.gz,fastq fastq,68167421235.0,504943861.0,DP8400019079BR L01 read.part 004 1.fq.gz,0:35 1:100,A:16649586341;C:18680058276;G:17357353071;T:15478214481;N:2209066,35,100,,,16649586341,18680058276,17357353071,15478214481,2209066,SRX28216487,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35059,SRR32942235,SRX28216486,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400019076BR L01 read.DP8400016197TL C1.part 004,DP8400019076BR L01 read.DP8400016197TL C1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400019076BR_L01_read.part_004_1.fq.gz DP8400019076BR_L01_read.part_004_2.fq.gz,fastq fastq,53805979620.0,398562812.0,DP8400019076BR L01 read.part 004 1.fq.gz,0:35 1:100,A:13247593691;C:14793052160;G:13494868839;T:12266565284;N:3899646,35,100,,,13247593691,14793052160,13494868839,12266565284,3899646,SRX28216486,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,2e-05,0.01012,1e-05,0.00168,1.0,0.98524,,0.56293,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35060,SRR32942236,SRX28216485,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018980BR L01 read.DP8400016191TL F1.part 004,DP8400018980BR L01 read.DP8400016191TL F1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018980BR_L01_read.part_004_1.fq.gz DP8400018980BR_L01_read.part_004_2.fq.gz,fastq fastq,67132205325.0,497275595.0,DP8400018980BR L01 read.part 004 1.fq.gz,0:35 1:100,A:16568981023;C:18166652562;G:16840682131;T:15554230958;N:1658651,35,100,,,16568981023,18166652562,16840682131,15554230958,1658651,SRX28216485,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35061,SRR32942237,SRX28216484,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018979BR L01 read.DP8400016191TL F1.part 004,DP8400018979BR L01 read.DP8400016191TL F1.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018979BR_L01_read.part_004_1.fq.gz DP8400018979BR_L01_read.part_004_2.fq.gz,fastq fastq,63284306535.0,468772641.0,DP8400018979BR L01 read.part 004 1.fq.gz,0:35 1:100,A:15665021886;C:17101051964;G:15876594234;T:14639144233;N:2494218,35,100,,,15665021886,17101051964,15876594234,14639144233,2494218,SRX28216484,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35062,SRR32942238,SRX28216483,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018978BR L01 read.DP8400016191TL E6.part 004,DP8400018978BR L01 read.DP8400016191TL E6.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018978BR_L01_read.part_004_1.fq.gz DP8400018978BR_L01_read.part_004_2.fq.gz,fastq fastq,59094081900.0,437733940.0,DP8400018978BR L01 read.part 004 1.fq.gz,0:35 1:100,A:14851914535;C:15828389532;G:14979211309;T:13431434713;N:3131811,35,100,,,14851914535,15828389532,14979211309,13431434713,3131811,SRX28216483,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35063,SRR32942239,SRX28216482,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018801BL L01 read.DP8400016191TL D5.part 004,DP8400018801BL L01 read.DP8400016191TL D5.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018801BL_L01_read.part_004_1.fq.gz DP8400018801BL_L01_read.part_004_2.fq.gz,fastq fastq,58191046785.0,431044791.0,DP8400018801BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14010395436;C:16359766643;G:14698012792;T:13122125742;N:746172,35,100,,,14010395436,16359766643,14698012792,13122125742,746172,SRX28216482,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35064,SRR32942240,SRX28216481,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018799BL L01 read.DP8400016191TL D6.part 004,DP8400018799BL L01 read.DP8400016191TL D6.part 004,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018799BL_L01_read.part_004_1.fq.gz DP8400018799BL_L01_read.part_004_2.fq.gz,fastq fastq,59327317890.0,439461614.0,DP8400018799BL L01 read.part 004 1.fq.gz,0:35 1:100,A:14554524145;C:16303529740;G:14827173425;T:13640037481;N:2053099,35,100,,,14554524145,16303529740,14827173425,13640037481,2053099,SRX28216481,SRS24507277,SRA2105098,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35065,SRR32941743,SRX28216141,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018977BR L01 read.DP8400016191TL E1.part 003,DP8400018977BR L01 read.DP8400016191TL E1.part 003,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018977BR_L01_read.part_003_1.fq.gz DP8400018977BR_L01_read.part_003_2.fq.gz,fastq fastq,59614832385.0,441591351.0,DP8400018977BR L01 read.part 003 1.fq.gz,0:35 1:100,A:14519835844;C:16428434790;G:15093247607;T:13572136948;N:1177196,35,100,,,14519835844,16428434790,15093247607,13572136948,1177196,SRX28216141,SRS24507277,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35066,SRR32941744,SRX28216140,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018976BR L01 read.DP8400016191TL D6.part 003,DP8400018976BR L01 read.DP8400016191TL D6.part 003,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018976BR_L01_read.part_003_1.fq.gz DP8400018976BR_L01_read.part_003_2.fq.gz,fastq fastq,54281520360.0,402085336.0,DP8400018976BR L01 read.part 003 1.fq.gz,0:35 1:100,A:13404837461;C:14823033042;G:13663623989;T:12387112146;N:2913722,35,100,,,13404837461,14823033042,13663623989,12387112146,2913722,SRX28216140,SRS24507277,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,2e-05,0.04912,1e-05,0.00838,1.0,0.95747,,0.55707,35,100,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35067,SRR32941745,SRX28216139,SRS24507289,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 33.sc 6hpa lib3 cDNA.part 003,FP200007602 L01 33.sc 6hpa lib3 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_33.part_003_1.fq.gz FP200007602_L01_33.part_003_2.fq.gz,fastq fastq,52774563400.0,405958180.0,FP200007602 L01 33.part 003 1.fq.gz,0:30 1:100,A:14255217265;C:11937793636;G:12321950106;T:14259119912;N:482481,30,100,,,14255217265,11937793636,12321950106,14259119912,482481,SRX28216139,SRS24507289,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.0001,0.89958,6e-05,0.09055,0.99989,0.79582,0.8,0.56089,30,100,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35068,SRR32941746,SRX28216138,SRS24507289,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 32.sc 6hpa lib2 cDNA.part 003,FP200007602 L01 32.sc 6hpa lib2 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_32.part_003_1.fq.gz FP200007602_L01_32.part_003_2.fq.gz,fastq fastq,49836891130.0,383360701.0,FP200007602 L01 32.part 003 1.fq.gz,0:30 1:100,A:13527204507;C:11075810906;G:11486107221;T:13747331467;N:437029,30,100,,,13527204507,11075810906,11486107221,13747331467,437029,SRX28216138,SRS24507289,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35069,SRR32941747,SRX28216137,SRS24507289,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 6 hpa heart,,strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 31.sc 6hpa lib1 cDNA.part 003,FP200007602 L01 31.sc 6hpa lib1 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_31.part_003_1.fq.gz FP200007602_L01_31.part_003_2.fq.gz,fastq fastq,45283656990.0,348335823.0,FP200007602 L01 31.part 003 1.fq.gz,0:30 1:100,A:12219343085;C:10085969004;G:10507694258;T:12470346266;N:304377,30,100,,,12219343085,10085969004,10507694258,12470346266,304377,SRX28216137,SRS24507289,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.00014,0.90476,0.00013,0.13012,0.99997,0.78277,1.0,0.4927,30,100,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35070,SRR32941748,SRX28216136,SRS24507288,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 30.sc 14dpa lib3 cDNA.part 003,FP200007602 L01 30.sc 14dpa lib3 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_30.part_003_1.fq.gz FP200007602_L01_30.part_003_2.fq.gz,fastq fastq,51741663350.0,398012795.0,FP200007602 L01 30.part 003 1.fq.gz,0:30 1:100,A:14033964579;C:11617374103;G:11916181919;T:14173807100;N:335649,30,100,,,14033964579,11617374103,11916181919,14173807100,335649,SRX28216136,SRS24507288,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.00013,0.90199,0.00012,0.12841,0.99997,0.78535,1.0,0.51663,30,100,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35071,SRR32941749,SRX28216135,SRS24507288,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 29.sc 14dpa lib2 cDNA.part 003,FP200007602 L01 29.sc 14dpa lib2 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_29.part_003_1.fq.gz FP200007602_L01_29.part_003_2.fq.gz,fastq fastq,54600571090.0,420004393.0,FP200007602 L01 29.part 003 1.fq.gz,0:30 1:100,A:14772663533;C:12292176645;G:12802178748;T:14733076027;N:476137,30,100,,,14772663533,12292176645,12802178748,14733076027,476137,SRX28216135,SRS24507288,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.00013,0.81175,0.00012,0.12933,0.99997,0.79149,0.0,0.55331,30,100,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35072,SRR32941750,SRX28216134,SRS24507288,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc 14 dpa heart,,strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 28.sc 14dpa lib1 cDNA.part 003,FP200007602 L01 28.sc 14dpa lib1 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_28.part_003_1.fq.gz FP200007602_L01_28.part_003_2.fq.gz,fastq fastq,53296161360.0,409970472.0,FP200007602 L01 28.part 003 1.fq.gz,0:30 1:100,A:14349548475;C:12163921271;G:12495289865;T:14287023113;N:378636,30,100,,,14349548475,12163921271,12495289865,14287023113,378636,SRX28216134,SRS24507288,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35073,SRR32941751,SRX28216133,SRS24507279,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 27.sc uninjured lib6 cDNA.part 003,FP200007602 L01 27.sc uninjured lib6 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_27.part_003_1.fq.gz FP200007602_L01_27.part_003_2.fq.gz,fastq fastq,40810493360.0,313926872.0,FP200007602 L01 27.part 003 1.fq.gz,0:30 1:100,A:11162306799;C:8919510948;G:9446757832;T:11281638835;N:278946,30,100,,,11162306799,8919510948,9446757832,11281638835,278946,SRX28216133,SRS24507279,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35074,SRR32941752,SRX28216132,SRS24507279,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 26.sc uninjured lib5 cDNA.part 003,FP200007602 L01 26.sc uninjured lib5 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_26.part_003_1.fq.gz FP200007602_L01_26.part_003_2.fq.gz,fastq fastq,48055989540.0,369661458.0,FP200007602 L01 26.part 003 1.fq.gz,0:30 1:100,A:13066998544;C:10607831538;G:11224043416;T:13156761919;N:354123,30,100,,,13066998544,10607831538,11224043416,13156761919,354123,SRX28216132,SRS24507279,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35075,SRR32941753,SRX28216131,SRS24507277,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3D heart,,strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  3D zebrafish heart,DP8400018807BL L01 read.DP8400016191TL E3.part 003,DP8400018807BL L01 read.DP8400016191TL E3.part 003,Stereo seq of  3D zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400018807BL_L01_read.part_003_1.fq.gz DP8400018807BL_L01_read.part_003_2.fq.gz,fastq fastq,61323618375.0,454249025.0,DP8400018807BL L01 read.part 003 1.fq.gz,0:35 1:100,A:15248493015;C:16583288261;G:15380807329;T:14109460891;N:1568879,35,100,,,15248493015,16583288261,15380807329,14109460891,1568879,SRX28216131,SRS24507277,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,T,mates < 9% mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35076,SRR32941754,SRX28216130,SRS24507279,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,sc uninjured heart,,strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish heart,FP200007602 L01 25.sc uninjured lib4 cDNA.part 003,FP200007602 L01 25.sc uninjured lib4 cDNA.part 003,scRNA seq of zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,FP200007602_L01_25.part_003_1.fq.gz FP200007602_L01_25.part_003_2.fq.gz,fastq fastq,44668626860.0,343604822.0,FP200007602 L01 25.part 003 1.fq.gz,0:30 1:100,A:12037600502;C:9915599565;G:10481918097;T:12233092728;N:415968,30,100,,,12037600502,9915599565,10481918097,12233092728,415968,SRX28216130,SRS24507279,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35077,SRR32941755,SRX28216129,SRS24541724,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 12 hpa heart,,strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023504BL L01 read.T3 C3.part 003,DP8400023504BL L01 read.T3 C3.part 003,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023504BL_L01_read.part_003_1.fq.gz DP8400023504BL_L01_read.part_003_2.fq.gz,fastq fastq,111828836655.0,828361753.0,DP8400023504BL L01 read.part 003 1.fq.gz,,,,,,,,,,,,SRX28216129,SRS24541724,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.00014,0.27181,0.00012,0.07381,0.99995,0.90082,0.5,0.65275,35,100,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35078,SRR32941756,SRX28216128,SRS24541724,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 12 hpa heart,,strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023503BL L01 read.T3 C2.part 003,DP8400023503BL L01 read.T3 C2.part 003,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023503BL_L01_read.part_003_1.fq.gz DP8400023503BL_L01_read.part_003_2.fq.gz,fastq fastq,113313672900.0,839360540.0,DP8400023503BL L01 read.part 003 1.fq.gz,,,,,,,,,,,,SRX28216128,SRS24541724,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.00026,0.36533,0.00024,0.09695,0.99993,0.8804,0.66666,0.66049,35,100,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35079,SRR32941757,SRX28216127,SRS24541724,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 12 hpa heart,,strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023501BL L01 read.T3 C1.part 003,DP8400023501BL L01 read.T3 C1.part 003,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023501BL_L01_read.part_003_1.fq.gz DP8400023501BL_L01_read.part_003_2.fq.gz,fastq fastq,120371892885.0,891643651.0,DP8400023501BL L01 read.part 003 1.fq.gz,,,,,,,,,,,,SRX28216127,SRS24541724,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",2,0.00051,0.5198,0.00044,0.11646,0.99975,0.84451,0.58333,0.61986,35,100,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System
35080,SRR32941758,SRX28216126,SRS24541721,SRP573401,PRJNA1233465,An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart,PRJNA1233465,Other,Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here  we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.,,,,,spatial 3 dpa heart,,strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal,,,,,,,,,Stereo seq of  zebrafish heart,DP8400023368BR L01 read.T5 C3.part 003,DP8400023368BR L01 read.T5 C3.part 003,Stereo seq of  zebrafish heart,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP573401,,,DP8400023368BR_L01_read.part_003_1.fq.gz DP8400023368BR_L01_read.part_003_2.fq.gz,fastq fastq,126180702450.0,934671870.0,DP8400023368BR L01 read.part 003 1.fq.gz,,,,,,,,,,,,SRX28216126,SRS24541721,SRA2105097,BGI Research,"BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China",,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,China,2025-04-02,Undetermined,Adult,Heart,Cardiovascular System