rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 69438,SRR18687231,SRX14788266,SRS12547158,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 5mpf scRNAseq,GSM6035264,,source name:wkm|tissue:marrow|age:5mpf|genotype:gata2a / ,Mutant 5mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:gata2a / ,GSM6035264,GSM6035264: Mutant 5mpf scRNAseq; Danio rerio; RNA Seq,GSM6035264 r1,GSM6035264,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,MUTANT_S2_L001_I1_001.fastq.gz MUTANT_S2_L001_R1_001.fastq.gz MUTANT_S2_L001_R2_001.fastq.gz,fastq fastq fastq,7173831982.0,56486866.0,GSM6035264 r1,0:8 1:28 2:91,A:1358934535;C:1244254049;G:1282298109;T:1250397550;N:4420563,8,28,91,,1358934535,1244254049,1282298109,1250397550,4420563,SRX14788266,SRS12547158,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.96273,,0.07511,,0.84861,,0.53711,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69439,SRR18687232,SRX14788266,SRS12547158,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 5mpf scRNAseq,GSM6035264,,source name:wkm|tissue:marrow|age:5mpf|genotype:gata2a / ,Mutant 5mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:gata2a / ,GSM6035264,GSM6035264: Mutant 5mpf scRNAseq; Danio rerio; RNA Seq,GSM6035264 r1,GSM6035264,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,MUTANT_S2_L002_I1_001.fastq.gz MUTANT_S2_L002_R1_001.fastq.gz MUTANT_S2_L002_R2_001.fastq.gz,fastq fastq fastq,7052205352.0,55529176.0,GSM6035264 r2,0:8 1:28 2:91,A:1335427840;C:1223120616;G:1262490348;T:1228023814;N:4092398,8,28,91,,1335427840,1223120616,1262490348,1228023814,4092398,SRX14788266,SRS12547158,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.96332,,0.07559,,0.84869,,0.53571,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69440,SRR18687233,SRX14788266,SRS12547158,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 5mpf scRNAseq,GSM6035264,,source name:wkm|tissue:marrow|age:5mpf|genotype:gata2a / ,Mutant 5mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:gata2a / ,GSM6035264,GSM6035264: Mutant 5mpf scRNAseq; Danio rerio; RNA Seq,GSM6035264 r1,GSM6035264,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,MUTANT_S2_L003_I1_001.fastq.gz MUTANT_S2_L003_R1_001.fastq.gz MUTANT_S2_L003_R2_001.fastq.gz,fastq fastq fastq,7121271889.0,56073007.0,GSM6035264 r3,0:8 1:28 2:91,A:1348956241;C:1235761797;G:1273552429;T:1240317702;N:4055468,8,28,91,,1348956241,1235761797,1273552429,1240317702,4055468,SRX14788266,SRS12547158,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.96323,,0.07544,,0.84776,,0.54532,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69441,SRR18687234,SRX14788266,SRS12547158,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 5mpf scRNAseq,GSM6035264,,source name:wkm|tissue:marrow|age:5mpf|genotype:gata2a / ,Mutant 5mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:gata2a / ,GSM6035264,GSM6035264: Mutant 5mpf scRNAseq; Danio rerio; RNA Seq,GSM6035264 r1,GSM6035264,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,MUTANT_S2_L004_I1_001.fastq.gz MUTANT_S2_L004_R1_001.fastq.gz MUTANT_S2_L004_R2_001.fastq.gz,fastq fastq fastq,7060634088.0,55595544.0,GSM6035264 r4,0:8 1:28 2:91,A:1337923427;C:1225128065;G:1262793134;T:1229767092;N:3582786,8,28,91,,1337923427,1225128065,1262793134,1229767092,3582786,SRX14788266,SRS12547158,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.96323,,0.07552,,0.84626,,0.53808,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69442,SRR18687235,SRX14788265,SRS12547159,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 5mpf scRNA seq,GSM6035263,,source name:wkm|tissue:marrow|age:5mpf|genotype:WT,WT 5mpf scRNA seq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:WT,GSM6035263,GSM6035263: WT 5mpf scRNA seq; Danio rerio; RNA Seq,GSM6035263 r1,GSM6035263,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT_S1_L001_I1_001.fastq.gz WT_S1_L001_R1_001.fastq.gz WT_S1_L001_R2_001.fastq.gz,fastq fastq fastq,7887658469.0,62107547.0,GSM6035263 r1,0:8 1:28 2:91,A:1686084589;C:1207047546;G:1347307215;T:1406353747;N:4993680,8,28,91,,1686084589,1207047546,1347307215,1406353747,4993680,SRX14788265,SRS12547159,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.93208,,0.13464,,0.82885,,0.5507,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69443,SRR18687236,SRX14788265,SRS12547159,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 5mpf scRNA seq,GSM6035263,,source name:wkm|tissue:marrow|age:5mpf|genotype:WT,WT 5mpf scRNA seq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:WT,GSM6035263,GSM6035263: WT 5mpf scRNA seq; Danio rerio; RNA Seq,GSM6035263 r1,GSM6035263,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT_S1_L002_I1_001.fastq.gz WT_S1_L002_R1_001.fastq.gz WT_S1_L002_R2_001.fastq.gz,fastq fastq fastq,7726846751.0,60841313.0,GSM6035263 r2,0:8 1:28 2:91,A:1651285269;C:1182541074;G:1321442374;T:1376689852;N:4600914,8,28,91,,1651285269,1182541074,1321442374,1376689852,4600914,SRX14788265,SRS12547159,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.93139,,0.13512,,0.83157,,0.54659,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69444,SRR18687237,SRX14788265,SRS12547159,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 5mpf scRNA seq,GSM6035263,,source name:wkm|tissue:marrow|age:5mpf|genotype:WT,WT 5mpf scRNA seq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:WT,GSM6035263,GSM6035263: WT 5mpf scRNA seq; Danio rerio; RNA Seq,GSM6035263 r1,GSM6035263,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT_S1_L003_I1_001.fastq.gz WT_S1_L003_R1_001.fastq.gz WT_S1_L003_R2_001.fastq.gz,fastq fastq fastq,7809746382.0,61494066.0,GSM6035263 r3,0:8 1:28 2:91,A:1669649704;C:1195820935;G:1334457445;T:1391506607;N:4525315,8,28,91,,1669649704,1195820935,1334457445,1391506607,4525315,SRX14788265,SRS12547159,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.9319,,0.13521,,0.83039,,0.54131,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69445,SRR18687238,SRX14788265,SRS12547159,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 5mpf scRNA seq,GSM6035263,,source name:wkm|tissue:marrow|age:5mpf|genotype:WT,WT 5mpf scRNA seq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:5mpf|genotype:WT,GSM6035263,GSM6035263: WT 5mpf scRNA seq; Danio rerio; RNA Seq,GSM6035263 r1,GSM6035263,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT_S1_L004_I1_001.fastq.gz WT_S1_L004_R1_001.fastq.gz WT_S1_L004_R2_001.fastq.gz,fastq fastq fastq,7741554113.0,60957119.0,GSM6035263 r4,0:8 1:28 2:91,A:1655590157;C:1185244017;G:1323146581;T:1379127206;N:3989868,8,28,91,,1655590157,1185244017,1323146581,1379127206,3989868,SRX14788265,SRS12547159,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.93299,,0.13493,,0.82852,,0.55166,,91,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69446,SRR18687240,SRX14788264,SRS12547155,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 12mpf scRNAseq,GSM6035262,,source name:wkm|tissue:marrow|age:12mpf|genotype:gata2a / ,Mutant 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:gata2a / ,GSM6035262,GSM6035262: Mutant 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035262 r1,GSM6035262,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,mutant_S2_L001_I1_001.fastq.gz mutant_S2_L001_R1_001.fastq.gz mutant_S2_L001_R2_001.fastq.gz,fastq fastq fastq,2802332148.0,21229789.0,GSM6035262 r1,0:8 1:26 2:98,A:640368763;C:436216313;G:577751307;T:426047488;N:135451,8,26,98,,640368763,436216313,577751307,426047488,135451,SRX14788264,SRS12547155,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.95554,,0.01147,,0.92565,,0.57239,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69447,SRR18687241,SRX14788264,SRS12547155,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 12mpf scRNAseq,GSM6035262,,source name:wkm|tissue:marrow|age:12mpf|genotype:gata2a / ,Mutant 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:gata2a / ,GSM6035262,GSM6035262: Mutant 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035262 r1,GSM6035262,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,mutant_S2_L002_I1_001.fastq.gz mutant_S2_L002_R1_001.fastq.gz mutant_S2_L002_R2_001.fastq.gz,fastq fastq fastq,2716435392.0,20579056.0,GSM6035262 r2,0:8 1:26 2:98,A:630665836;C:423337212;G:549434401;T:413134647;N:175392,8,26,98,,630665836,423337212,549434401,413134647,175392,SRX14788264,SRS12547155,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.95616,,0.01121,,0.92638,,0.59372,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69448,SRR18687242,SRX14788264,SRS12547155,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 12mpf scRNAseq,GSM6035262,,source name:wkm|tissue:marrow|age:12mpf|genotype:gata2a / ,Mutant 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:gata2a / ,GSM6035262,GSM6035262: Mutant 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035262 r1,GSM6035262,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,mutant_S2_L003_I1_001.fastq.gz mutant_S2_L003_R1_001.fastq.gz mutant_S2_L003_R2_001.fastq.gz,fastq fastq fastq,2866261860.0,21714105.0,GSM6035262 r3,0:8 1:26 2:98,A:662138328;C:448896468;G:581624031;T:434958720;N:364743,8,26,98,,662138328,448896468,581624031,434958720,364743,SRX14788264,SRS12547155,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.95475,,0.0112,,0.9264,,0.57664,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69449,SRR18687243,SRX14788264,SRS12547155,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,Mutant 12mpf scRNAseq,GSM6035262,,source name:wkm|tissue:marrow|age:12mpf|genotype:gata2a / ,Mutant 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:gata2a / ,GSM6035262,GSM6035262: Mutant 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035262 r1,GSM6035262,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,mutant_S2_L004_I1_001.fastq.gz mutant_S2_L004_R1_001.fastq.gz mutant_S2_L004_R2_001.fastq.gz,fastq fastq fastq,2778700584.0,21050762.0,GSM6035262 r4,0:8 1:26 2:98,A:646107299;C:435138523;G:558295882;T:423168974;N:263998,8,26,98,,646107299,435138523,558295882,423168974,263998,SRX14788264,SRS12547155,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.95523,,0.01148,,0.92612,,0.594,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69450,SRR18687249,SRX14788262,SRS12547153,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 12mpf scRNAseq,GSM6035261,,source name:wkm|tissue:marrow|age:12mpf|genotype:WT,WT 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:WT,GSM6035261,GSM6035261: WT 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035261 r1,GSM6035261,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT-12mpf_S1_L001_I1_001.fastq.gz WT-12mpf_S1_L001_R1_001.fastq.gz WT-12mpf_S1_L001_R2_001.fastq.gz,fastq fastq fastq,2871526284.0,21753987.0,GSM6035261 r1,0:8 1:26 2:98,A:657935861;C:458782361;G:577643976;T:437389248;N:139280,8,26,98,,657935861,458782361,577643976,437389248,139280,SRX14788262,SRS12547153,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.95618,,0.01409,,0.93137,,0.57474,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69451,SRR18687250,SRX14788262,SRS12547153,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 12mpf scRNAseq,GSM6035261,,source name:wkm|tissue:marrow|age:12mpf|genotype:WT,WT 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:WT,GSM6035261,GSM6035261: WT 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035261 r1,GSM6035261,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT-12mpf_S1_L002_I1_001.fastq.gz WT-12mpf_S1_L002_R1_001.fastq.gz WT-12mpf_S1_L002_R2_001.fastq.gz,fastq fastq fastq,2786830992.0,21112356.0,GSM6035261 r2,0:8 1:26 2:98,A:646477118;C:445716938;G:552088162;T:424546694;N:181976,8,26,98,,646477118,445716938,552088162,424546694,181976,SRX14788262,SRS12547153,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.95703,,0.01387,,0.93117,,0.57965,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69452,SRR18687251,SRX14788262,SRS12547153,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 12mpf scRNAseq,GSM6035261,,source name:wkm|tissue:marrow|age:12mpf|genotype:WT,WT 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:WT,GSM6035261,GSM6035261: WT 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035261 r1,GSM6035261,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT-12mpf_S1_L003_I1_001.fastq.gz WT-12mpf_S1_L003_R1_001.fastq.gz WT-12mpf_S1_L003_R2_001.fastq.gz,fastq fastq fastq,2940233472.0,22274496.0,GSM6035261 r3,0:8 1:26 2:98,A:678078355;C:472082276;G:585591377;T:446774858;N:373742,8,26,98,,678078355,472082276,585591377,446774858,373742,SRX14788262,SRS12547153,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.95649,,0.01398,,0.93237,,0.5686,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System 69453,SRR18687252,SRX14788262,SRS12547153,SRP368307,PRJNA824844,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals,GSE200503,Other,Single cell analysis of zebrafish marrow in WT and gata2a mutant animals Overall design: Analysing transcriptomics and chromatin acessability,,,,WT 12mpf scRNAseq,GSM6035261,,source name:wkm|tissue:marrow|age:12mpf|genotype:WT,WT 12mpf scRNAseq,scRNA Seq samples were processed using CellRanger 10x Genomics: v3.1.0 For scATAC Seq peaks were called using MACS2 using the following commands: macs3 callpeak t / MUT1/outs/possorted bam.bam /MUT2/outs/possorted bam.bam / /MUT3/outs/possorted bam.bam n MUT g 1.3E9 and callpeak t / WT1/outs/possorted bam.bam /WT2/outs/possorted bam.bam / /WT3/outs/possorted bam.bam n WT g 1.3E9. Peaks were filtered for qValue < 0.01 and signalValue >2. Analysis was completed using CellRanger ATAC 10x Genomics: v1.2.0 and peaks were specified using the output from MACS2 during the cellrnager atac reanalyze step. An overarching WT peak file was use for all WT samples and an overarching MUT peak file was use for all MUT samples Assembly:  GRCz11,wkm,cells were not treated,10x genomics microfluidics system was used to isolate cells 3’ scRNAseq was completed using Chromium Next GEM single cell 3’ GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,all samples were obtained from zebrafish marrow at the indicated timepoints e.g. 12mpf,tissue:marrow|age:12mpf|genotype:WT,GSM6035261,GSM6035261: WT 12mpf scRNAseq; Danio rerio; RNA Seq,GSM6035261 r1,GSM6035261,1,10x genomics microfluidics system was used to isolate cells three prime scRNAseq was completed using Chromium Next GEM single cell three prime GEM library and Gel bead Kit v3.1 10x Genomics and sequenced using a NextSeq 500 Illumina. scATAC assay for transposable accessible chromatin assay Seq was completed using Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 Chromium Next GEM Chip H Single Cell Kit and Chromium i7 Multiplex Kit N Set A 10x Genomics. Libraries were sequenced using NextSeq 500 Illumina.,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 500,,SRP368307,,loader:fastq load.py,WT-12mpf_S1_L004_I1_001.fastq.gz WT-12mpf_S1_L004_R1_001.fastq.gz WT-12mpf_S1_L004_R2_001.fastq.gz,fastq fastq fastq,2850270720.0,21592960.0,GSM6035261 r4,0:8 1:26 2:98,A:661215163;C:457617537;G:562445244;T:434561966;N:270170,8,26,98,,661215163,457617537,562445244,434561966,270170,SRX14788262,SRS12547153,SRA1400926,"Institute of Cancer and Genomic Sciences, University of Birminhgam","Institute of Cancer and Genomic Sciences, University of Birminhgam",1,0.952,,0.0139,,0.93188,,0.56069,,98,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-04-08,Adult,Adult,Marrow,Renal System