rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
56772,SRR15813417,SRX12105521,SRS10085817,SRP249509,PRJNA606682,CellOracle: Dissecting cell identity via network inference and in silico gene perturbation,GSE145298,Other,Single cell RNA sequencing analysis of zebrafish embryos with wild type and crispant sample. Overall design: Single cell RNA sequencing was performed on wild type zebrafish embryos or F0 perturbed embryos using CRISPR Cas9 injection method.,,pubmed:36755098,,flh mut 2,GSM5567791,,tissue:flh mutant|strain:floating head mutant  n1/n1|Stage:10 hpf|experiment:Mutant embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,flh mut 2,Generation of fastq files via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Alignment to GRCz11 genome build via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Genome build: GRCz11 Supplementary files format and content: barcodes.tsv.gz  feature.tsv.gz  matrix.mtx.gz,flh mutant,,10x Genomcis Chromium single cell preparation,,strain:floating head mutant  n1/n1|Stage:10 hpf|experiment:Mutant embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,GSM5567791,GSM5567791: flh mut 2; Danio rerio; RNA Seq,GSM5567791,,1,10x Genomcis Chromium single cell preparation,GEO Accession:GSM5567791,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 550,,SRP249509,,assembly:GRCz11|intentional duplicate,flh_mut_2_possorted_genome_bam.bam,10X Genomics bam file,16092806220.0,178808958.0,GSM5567791 r1,0:90,A:4808364717;C:3262784563;G:3632229222;T:4384293862;N:5133856,90,,,,4808364717,3262784563,3632229222,4384293862,5133856,SRX12105521,SRS10085817,SRA1042742,GEO,Washington University in St Louis,1,0.91587,,0.25603,,0.8199,,0.54642,,90,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United States,2021-09-08,Gastrula,Embryo,Head,Nervous System
56773,SRR15813416,SRX12105520,SRS10085816,SRP249509,PRJNA606682,CellOracle: Dissecting cell identity via network inference and in silico gene perturbation,GSE145298,Other,Single cell RNA sequencing analysis of zebrafish embryos with wild type and crispant sample. Overall design: Single cell RNA sequencing was performed on wild type zebrafish embryos or F0 perturbed embryos using CRISPR Cas9 injection method.,,pubmed:36755098,,flh mut 1,GSM5567790,,tissue:flh mutant|strain:floating head mutant  n1/n1|Stage:10 hpf|experiment:Mutant embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,flh mut 1,Generation of fastq files via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Alignment to GRCz11 genome build via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Genome build: GRCz11 Supplementary files format and content: barcodes.tsv.gz  feature.tsv.gz  matrix.mtx.gz,flh mutant,,10x Genomcis Chromium single cell preparation,,strain:floating head mutant  n1/n1|Stage:10 hpf|experiment:Mutant embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,GSM5567790,GSM5567790: flh mut 1; Danio rerio; RNA Seq,GSM5567790,,1,10x Genomcis Chromium single cell preparation,GEO Accession:GSM5567790,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 550,,SRP249509,,assembly:GRCz11|intentional duplicate,flh_mut_1_possorted_genome_bam.bam,10X Genomics bam file,20399851800.0,226665020.0,GSM5567790 r1,0:90,A:6026150068;C:4212547690;G:4691267625;T:5463467796;N:6418621,90,,,,6026150068,4212547690,4691267625,5463467796,6418621,SRX12105520,SRS10085816,SRA1042742,GEO,Washington University in St Louis,1,0.91268,,0.26785,,0.81288,,0.49462,,90,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United States,2021-09-08,Gastrula,Embryo,Head,Nervous System
56774,SRR15813415,SRX12105519,SRS10085813,SRP249509,PRJNA606682,CellOracle: Dissecting cell identity via network inference and in silico gene perturbation,GSE145298,Other,Single cell RNA sequencing analysis of zebrafish embryos with wild type and crispant sample. Overall design: Single cell RNA sequencing was performed on wild type zebrafish embryos or F0 perturbed embryos using CRISPR Cas9 injection method.,,pubmed:36755098,,flh control 2,GSM5567789,,tissue:control of flh mutant|strain:floating head mutant  +/+ and +/n1|Stage:10 hpf|experiment:Control embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,flh control 2,Generation of fastq files via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Alignment to GRCz11 genome build via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Genome build: GRCz11 Supplementary files format and content: barcodes.tsv.gz  feature.tsv.gz  matrix.mtx.gz,control of flh mutant,,10x Genomcis Chromium single cell preparation,,strain:floating head mutant  +/+ and +/n1|Stage:10 hpf|experiment:Control embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,GSM5567789,GSM5567789: flh control 2; Danio rerio; RNA Seq,GSM5567789,,1,10x Genomcis Chromium single cell preparation,GEO Accession:GSM5567789,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 550,,SRP249509,,assembly:GRCz11|intentional duplicate,flh_control_2_possorted_genome_bam.bam,10X Genomics bam file,24602487300.0,273360970.0,GSM5567789 r1,0:90,A:7284609077;C:5102535766;G:5760617216;T:6447307892;N:7417349,90,,,,7284609077,5102535766,5760617216,6447307892,7417349,SRX12105519,SRS10085813,SRA1042742,GEO,Washington University in St Louis,1,0.91331,,0.19905,,0.82925,,0.53189,,90,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United States,2021-09-08,Gastrula,Embryo,Head,Nervous System
56775,SRR15813414,SRX12105518,SRS10085811,SRP249509,PRJNA606682,CellOracle: Dissecting cell identity via network inference and in silico gene perturbation,GSE145298,Other,Single cell RNA sequencing analysis of zebrafish embryos with wild type and crispant sample. Overall design: Single cell RNA sequencing was performed on wild type zebrafish embryos or F0 perturbed embryos using CRISPR Cas9 injection method.,,pubmed:36755098,,flh control 1,GSM5567788,,tissue:control of flh mutant|strain:floating head mutant  +/+ and +/n1|Stage:10 hpf|experiment:Control embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,flh control 1,Generation of fastq files via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Alignment to GRCz11 genome build via https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest Genome build: GRCz11 Supplementary files format and content: barcodes.tsv.gz  feature.tsv.gz  matrix.mtx.gz,control of flh mutant,,10x Genomcis Chromium single cell preparation,,strain:floating head mutant  +/+ and +/n1|Stage:10 hpf|experiment:Control embryos were generated by crossing heterozygous and selecting mutants based on their morphology at 10 hpf.,GSM5567788,GSM5567788: flh control 1; Danio rerio; RNA Seq,GSM5567788,,1,10x Genomcis Chromium single cell preparation,GEO Accession:GSM5567788,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,NextSeq 550,,SRP249509,,assembly:GRCz11|intentional duplicate,flh_control_1_possorted_genome_bam.bam,10X Genomics bam file,15510481200.0,172338680.0,GSM5567788 r1,0:90,A:4537923297;C:3229068006;G:3600057890;T:4138746065;N:4685942,90,,,,4537923297,3229068006,3600057890,4138746065,4685942,SRX12105518,SRS10085811,SRA1042742,GEO,Washington University in St Louis,1,0.92203,,0.24638,,0.81274,,0.51857,,90,,B,,usable mapping rate,illumina,nextseq,unknown,cdna_unspecified,unknown,sc,single_cell_droplet,10x,,United States,2021-09-08,Gastrula,Embryo,Head,Nervous System