rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 49015,SRR7613129,SRX4477829,SRS3603028,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 100 ZF skin smallRNAseq,GSM3309731,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,NH FLI 100 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,GSM3309731,GSM3309731: NH FLI 100 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309731,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309731,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,1018240050.0,20364801.0,GSM3309731 r1,0:50,A:207814229;C:262063346;G:311334117;T:236957867;N:70491,50,,,,207814229,262063346,311334117,236957867,70491,SRX4477829,SRS3603028,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.1074,,0.00618,,0.9906,,0.54934,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49016,SRR7613128,SRX4477828,SRS3603027,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 111 ZF skin smallRNAseq,GSM3309730,,source name:skin|strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,NH FLI 111 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,GSM3309730,GSM3309730: NH FLI 111 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309730,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309730,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,356381250.0,7127625.0,GSM3309730 r1,0:50,A:70456264;C:88928211;G:109830748;T:87141036;N:24991,50,,,,70456264,88928211,109830748,87141036,24991,SRX4477828,SRS3603027,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.12249,,0.00713,,0.99299,,0.51987,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49017,SRR7613127,SRX4477827,SRS3603046,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 109 ZF skin smallRNAseq,GSM3309729,,source name:skin|strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,NH FLI 109 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,GSM3309729,GSM3309729: NH FLI 109 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309729,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309729,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,591923400.0,11838468.0,GSM3309729 r1,0:50,A:118873766;C:162031990;G:180619895;T:130356928;N:40821,50,,,,118873766,162031990,180619895,130356928,40821,SRX4477827,SRS3603046,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.09696,,0.00911,,0.99133,,0.52082,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49018,SRR7613126,SRX4477826,SRS3603047,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 108 ZF skin smallRNAseq,GSM3309728,,source name:skin|strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,NH FLI 108 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,GSM3309728,GSM3309728: NH FLI 108 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309728,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309728,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,736154900.0,14723098.0,GSM3309728 r1,0:50,A:138956520;C:196877364;G:231633259;T:168650452;N:37305,50,,,,138956520,196877364,231633259,168650452,37305,SRX4477826,SRS3603047,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01397,,0.0029,,0.99312,,0.79541,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49019,SRR7613125,SRX4477825,SRS3603026,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 107 ZF skin smallRNAseq,GSM3309727,,source name:skin|strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,NH FLI 107 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,GSM3309727,GSM3309727: NH FLI 107 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309727,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309727,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,749544400.0,14990888.0,GSM3309727 r1,0:50,A:141473710;C:216076836;G:236230720;T:155730665;N:32469,50,,,,141473710,216076836,236230720,155730665,32469,SRX4477825,SRS3603026,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.03825,,0.00867,,0.99439,,0.74015,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49020,SRR7613124,SRX4477824,SRS3603024,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 106 ZF skin smallRNAseq,GSM3309726,,source name:skin|strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,NH FLI 106 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:skin|age:3.5 years|Sex:male,GSM3309726,GSM3309726: NH FLI 106 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309726,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309726,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,611281450.0,12225629.0,GSM3309726 r1,0:50,A:111669012;C:149529261;G:189562873;T:160496848;N:23456,50,,,,111669012,149529261,189562873,160496848,23456,SRX4477824,SRS3603024,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02484,,0.00442,,0.9936,,0.64597,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49021,SRR7613123,SRX4477823,SRS3603023,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 150 ZF skin smallRNAseq,GSM3309725,,source name:skin|strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,NH FLI 150 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,GSM3309725,GSM3309725: NH FLI 150 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309725,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309725,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,2447513950.0,48950279.0,GSM3309725 r1,0:50,A:468043633;C:693473223;G:731577603;T:554251791;N:167700,50,,,,468043633,693473223,731577603,554251791,167700,SRX4477823,SRS3603023,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.07052,,0.01139,,0.99263,,0.59059,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49022,SRR7613122,SRX4477822,SRS3603025,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 149 ZF skin smallRNAseq,GSM3309724,,source name:skin|strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,NH FLI 149 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,GSM3309724,GSM3309724: NH FLI 149 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309724,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309724,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,1871316900.0,37426338.0,GSM3309724 r1,0:50,A:380496272;C:509217150;G:560916561;T:420592548;N:94369,50,,,,380496272,509217150,560916561,420592548,94369,SRX4477822,SRS3603025,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.03136,,0.00816,,0.99488,,0.79162,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49023,SRR7613121,SRX4477821,SRS3603022,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 147 ZF skin smallRNAseq,GSM3309723,,source name:skin|strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,NH FLI 147 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,GSM3309723,GSM3309723: NH FLI 147 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309723,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309723,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,445551200.0,8911024.0,GSM3309723 r1,0:50,A:89205774;C:110497307;G:135908107;T:109919980;N:20032,50,,,,89205774,110497307,135908107,109919980,20032,SRX4477821,SRS3603022,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01905,,0.00266,,0.99504,,0.62127,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49024,SRR7613120,SRX4477820,SRS3603021,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 146 ZF skin smallRNAseq,GSM3309722,,source name:skin|strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,NH FLI 146 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,GSM3309722,GSM3309722: NH FLI 146 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309722,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309722,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,982200100.0,19644002.0,GSM3309722 r1,0:50,A:192209302;C:247406918;G:306793998;T:235751163;N:38719,50,,,,192209302,247406918,306793998,235751163,38719,SRX4477820,SRS3603021,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02155,,0.00424,,0.99368,,0.62937,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49025,SRR7613119,SRX4477819,SRS3603020,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 145 ZF skin smallRNAseq,GSM3309721,,source name:skin|strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,NH FLI 145 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:skin|age:3 years|Sex:male,GSM3309721,GSM3309721: NH FLI 145 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309721,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309721,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,1336985700.0,26739714.0,GSM3309721 r1,0:50,A:257049527;C:368876598;G:422514962;T:288505412;N:39201,50,,,,257049527,368876598,422514962,288505412,39201,SRX4477819,SRS3603020,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.04358,,0.00841,,0.99312,,0.76026,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49026,SRR7613118,SRX4477818,SRS3603019,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 137 ZF skin smallRNAseq,GSM3309720,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,NH FLI 137 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,GSM3309720,GSM3309720: NH FLI 137 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309720,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309720,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,1039359300.0,20787186.0,GSM3309720 r1,0:50,A:200252400;C:286646217;G:322574775;T:229813195;N:72713,50,,,,200252400,286646217,322574775,229813195,72713,SRX4477818,SRS3603019,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.10832,,0.00654,,0.99113,,0.52929,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49027,SRR7613117,SRX4477817,SRS3603018,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 136 ZF skin smallRNAseq,GSM3309719,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,NH FLI 136 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,GSM3309719,GSM3309719: NH FLI 136 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309719,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309719,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,858942900.0,17178858.0,GSM3309719 r1,0:50,A:168340182;C:217323317;G:266544838;T:206688895;N:45668,50,,,,168340182,217323317,266544838,206688895,45668,SRX4477817,SRS3603018,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.00791,,0.00151,,0.99439,,0.71291,,50,,T,,under 1.2% mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49028,SRR7613116,SRX4477816,SRS3603017,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 135 ZF skin smallRNAseq,GSM3309718,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,NH FLI 135 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,GSM3309718,GSM3309718: NH FLI 135 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309718,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309718,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,1468015400.0,29360308.0,GSM3309718 r1,0:50,A:275374756;C:419939586;G:454098567;T:318538086;N:64405,50,,,,275374756,419939586,454098567,318538086,64405,SRX4477816,SRS3603017,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01694,,0.00341,,0.99511,,0.72261,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49029,SRR7613115,SRX4477815,SRS3603016,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 134 ZF skin smallRNAseq,GSM3309717,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,NH FLI 134 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,GSM3309717,GSM3309717: NH FLI 134 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309717,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309717,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,678693700.0,13573874.0,GSM3309717 r1,0:50,A:137270784;C:164359833;G:207871154;T:169165189;N:26740,50,,,,137270784,164359833,207871154,169165189,26740,SRX4477815,SRS3603016,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02269,,0.00427,,0.99295,,0.61091,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49030,SRR7613114,SRX4477814,SRS3603015,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 133 ZF skin smallRNAseq,GSM3309716,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,NH FLI 133 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:2 years|Sex:male,GSM3309716,GSM3309716: NH FLI 133 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309716,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309716,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,847740400.0,16954808.0,GSM3309716 r1,0:50,A:168475291;C:220114466;G:260254419;T:198870005;N:26219,50,,,,168475291,220114466,260254419,198870005,26219,SRX4477814,SRS3603015,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02431,,0.00324,,0.99226,,0.63318,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49031,SRR7613113,SRX4477813,SRS3603014,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 125 ZF skin smallRNAseq,GSM3309715,,source name:skin|strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,NH FLI 125 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,GSM3309715,GSM3309715: NH FLI 125 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309715,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309715,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,1020735000.0,20414700.0,GSM3309715 r1,0:50,A:205383345;C:253177983;G:308564152;T:253535814;N:73706,50,,,,205383345,253177983,308564152,253535814,73706,SRX4477813,SRS3603014,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.10278,,0.00523,,0.99155,,0.53907,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49032,SRR7613112,SRX4477812,SRS3603012,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 122 ZF skin smallRNAseq,GSM3309714,,source name:skin|strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,NH FLI 122 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,GSM3309714,GSM3309714: NH FLI 122 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309714,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309714,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,647896400.0,12957928.0,GSM3309714 r1,0:50,A:130330780;C:160929346;G:200383433;T:156218597;N:34244,50,,,,130330780,160929346,200383433,156218597,34244,SRX4477812,SRS3603012,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.00732,,0.0014,,0.99401,,0.68357,,50,,T,,under 1.2% mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49033,SRR7613111,SRX4477811,SRS3603013,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 121 ZF skin smallRNAseq,GSM3309713,,source name:skin|strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,NH FLI 121 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,GSM3309713,GSM3309713: NH FLI 121 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309713,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309713,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,1387064850.0,27741297.0,GSM3309713 r1,0:50,A:262170854;C:395102028;G:446088168;T:283643764;N:60036,50,,,,262170854,395102028,446088168,283643764,60036,SRX4477811,SRS3603013,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01646,,0.00363,,0.9922,,0.73895,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49034,SRR7613110,SRX4477810,SRS3603011,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 120 ZF skin smallRNAseq,GSM3309712,,source name:skin|strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,NH FLI 120 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,GSM3309712,GSM3309712: NH FLI 120 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309712,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309712,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,771712600.0,15434252.0,GSM3309712 r1,0:50,A:154765175;C:193689306;G:236383702;T:186844174;N:30243,50,,,,154765175,193689306,236383702,186844174,30243,SRX4477810,SRS3603011,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02376,,0.00465,,0.99166,,0.64918,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49035,SRR7613109,SRX4477809,SRS3603010,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 119 ZF skin smallRNAseq,GSM3309711,,source name:skin|strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,NH FLI 119 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:skin|age:1 year|Sex:male,GSM3309711,GSM3309711: NH FLI 119 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309711,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309711,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,582866200.0,11657324.0,GSM3309711 r1,0:50,A:113005827;C:152497718;G:181963234;T:135381588;N:17833,50,,,,113005827,152497718,181963234,135381588,17833,SRX4477809,SRS3603010,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02894,,0.00364,,0.99208,,0.58438,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49036,SRR7613108,SRX4477808,SRS3603008,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 98 ZF skin smallRNAseq,GSM3309710,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,NH FLI 98 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,GSM3309710,GSM3309710: NH FLI 98 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309710,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309710,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,663294800.0,13265896.0,GSM3309710 r1,0:50,A:137734100;C:161855118;G:201382193;T:162288125;N:35264,50,,,,137734100,161855118,201382193,162288125,35264,SRX4477808,SRS3603008,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.00618,,0.00111,,0.99478,,0.65659,,50,,T,,under 1.2% mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49037,SRR7613107,SRX4477807,SRS3603009,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 96 ZF skin smallRNAseq,GSM3309709,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,NH FLI 96 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,GSM3309709,GSM3309709: NH FLI 96 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309709,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309709,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,569130200.0,11382604.0,GSM3309709 r1,0:50,A:116615049;C:147340637;G:176081367;T:129067210;N:25937,50,,,,116615049,147340637,176081367,129067210,25937,SRX4477807,SRS3603009,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01763,,0.00207,,0.99389,,0.63527,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49038,SRR7613106,SRX4477806,SRS3603007,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 94 ZF skin smallRNAseq,GSM3309708,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,NH FLI 94 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,GSM3309708,GSM3309708: NH FLI 94 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309708,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309708,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,941640450.0,18832809.0,GSM3309708 r1,0:50,A:181731779;C:249059327;G:290464823;T:220348739;N:35782,50,,,,181731779,249059327,290464823,220348739,35782,SRX4477806,SRS3603007,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.03203,,0.00641,,0.98993,,0.72488,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure 49039,SRR7613105,SRX4477805,SRS3603006,SRP155559,PRJNA483229,Sequencing of Danio rerio skin for 5 age groups,GSE117820,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio skin. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 85 ZF skin smallRNAseq,GSM3309707,,source name:skin|strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,NH FLI 85 ZF skin smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,skin,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:skin|age:6 month|Sex:male,GSM3309707,GSM3309707: NH FLI 85 ZF skin smallRNAseq; Danio rerio; ncRNA Seq,GSM3309707,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309707,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155559,,,,,974950550.0,19499011.0,GSM3309707 r1,0:50,A:188952378;C:263095911;G:305812761;T:217059876;N:29624,50,,,,188952378,263095911,305812761,217059876,29624,SRX4477805,SRS3603006,SRA745967,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.03216,,0.00571,,0.99015,,0.67028,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Skin,Surface Structure