rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 28470,SRR26253203,SRX21963295,SRS19039869,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 2,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 22|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND2,Small RNA IFND2,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-2.deadaptor.fq.gz,fastq,278362309.0,11056139.0,IFN4 2.deadaptor.fq.gz,0:25.18,A:71944968;C:54562141;G:73333701;T:78511075;N:10424,25,,,,71944968,54562141,73333701,78511075,10424,SRX21963295,SRS19039869,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.93133,,0.07401,,0.96181,,0.74558,,31,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28471,SRR26253204,SRX21963294,SRS19039868,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 1,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 21|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND1,Small RNA IFND1,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-1.deadaptor.fq.gz,fastq,289362334.0,11048590.0,IFN4 1.deadaptor.fq.gz,0:26.19,A:73933649;C:59386039;G:76847534;T:79184583;N:10529,26,,,,73933649,59386039,76847534,79184583,10529,SRX21963294,SRS19039868,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.91683,,0.07099,,0.96132,,0.64882,,25,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28472,SRR26253205,SRX21963293,SRS19039867,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 4,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 20|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA4,Small RNA IFNA4,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-4.deadaptor.fq.gz,fastq,270529395.0,11070360.0,IFN1 4.deadaptor.fq.gz,0:24.44,A:69759888;C:54924667;G:71358091;T:74470720;N:16029,24,,,,69759888,54924667,71358091,74470720,16029,SRX21963293,SRS19039867,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.88469,,0.06696,,0.96664,,0.74853,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28473,SRR26253206,SRX21963292,SRS19039866,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 3,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 19|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA3,Small RNA IFNA3,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-3.deadaptor.fq.gz,fastq,353291957.0,11740560.0,IFN1 3.deadaptor.fq.gz,0:30.09,A:89026549;C:76490337;G:94719420;T:93036955;N:18696,30,,,,89026549,76490337,94719420,93036955,18696,SRX21963292,SRS19039866,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.83151,,0.07199,,0.96471,,0.71641,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28474,SRR26253207,SRX21963291,SRS19039865,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 2,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 18|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA2,Small RNA IFNA2,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-2.deadaptor.fq.gz,fastq,257949577.0,11213774.0,IFN1 2.deadaptor.fq.gz,0:23.00,A:67371681;C:51128621;G:67605590;T:71826657;N:17028,23,,,,67371681,51128621,67605590,71826657,17028,SRX21963291,SRS19039865,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.91396,,0.06536,,0.97197,,0.76269,,23,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28475,SRR26253208,SRX21963290,SRS19039864,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 1,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 17|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA1,Small RNA IFNA1,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-1.deadaptor.fq.gz,fastq,329358383.0,11799176.0,IFN1 1.deadaptor.fq.gz,0:27.91,A:84093681;C:68961271;G:86502739;T:89779605;N:21087,27,,,,84093681,68961271,86502739,89779605,21087,SRX21963290,SRS19039864,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.92116,,0.07483,,0.96796,,0.75179,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28476,SRR26253209,SRX21963289,SRS19039863,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 4,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 16|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C4,Small RNA C4,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-4.deadaptor.fq.gz,fastq,251577736.0,10951659.0,Control 4.deadaptor.fq.gz,0:22.97,A:65382449;C:50041232;G:66038625;T:70106464;N:8966,22,,,,65382449,50041232,66038625,70106464,8966,SRX21963289,SRS19039863,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.89744,,0.06821,,0.96607,,0.63829,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28477,SRR26253210,SRX21963288,SRS19039862,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 3,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 15|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C3,Small RNA C3,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-3.deadaptor.fq.gz,fastq,252164979.0,11004167.0,Control 3.deadaptor.fq.gz,0:22.92,A:65850899;C:48466665;G:66708038;T:71130786;N:8591,22,,,,65850899,48466665,66708038,71130786,8591,SRX21963288,SRS19039862,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.91567,,0.06804,,0.96278,,0.75579,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28478,SRR26253211,SRX21963287,SRS19039861,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 4,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 24|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND4,Small RNA IFND4,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-4.deadaptor.fq.gz,fastq,291708053.0,11503883.0,IFN4 4.deadaptor.fq.gz,0:25.36,A:74079231;C:61368459;G:76898572;T:79351225;N:10566,25,,,,74079231,61368459,76898572,79351225,10566,SRX21963287,SRS19039861,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.88888,,0.0633,,0.97305,,0.74862,,23,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28479,SRR26253212,SRX21963286,SRS19039860,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 3,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 23|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND3,Small RNA IFND3,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-3.deadaptor.fq.gz,fastq,349995495.0,11885662.0,IFN4 3.deadaptor.fq.gz,0:29.45,A:87443709;C:76373108;G:92741296;T:93425866;N:11516,29,,,,87443709,76373108,92741296,93425866,11516,SRX21963286,SRS19039860,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.92619,,0.06843,,0.9709,,0.74977,,73,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28480,SRR26253213,SRX21963285,SRS19039859,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 2,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 14|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C2,Small RNA C2,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-2.deadaptor.fq.gz,fastq,254163676.0,10744164.0,Control 2.deadaptor.fq.gz,0:23.66,A:66003417;C:49309846;G:67463940;T:71377644;N:8829,23,,,,66003417,49309846,67463940,71377644,8829,SRX21963285,SRS19039859,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.93068,,0.06626,,0.96441,,0.7492,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28481,SRR26253214,SRX21963284,SRS19039858,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 1,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 13|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C1,Small RNA C1,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-1.deadaptor.fq.gz,fastq,267090429.0,11027241.0,Control 1.deadaptor.fq.gz,0:24.22,A:70162511;C:50705437;G:69872659;T:76339682;N:10140,24,,,,70162511,50705437,69872659,76339682,10140,SRX21963284,SRS19039858,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.93267,,0.07189,,0.96735,,0.75447,,21,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line