rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
95,DRR050167,DRX045209,DRS025834,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 3,SAMD00044057,,sample name:ES1 EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044057,DRX045209,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>105</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044057,,,,371748120.0,3469843.0,DRR050167,0:107.14,A:107190409;C:79475572;G:83520360;T:101561779;N:0,107,,,,107190409,79475572,83520360,101561779,0,DRX045209,DRS025834,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.81026,,0.26715,,0.86953,,0.52321,,51,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
96,DRR050166,DRX045208,DRS025833,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 2,SAMD00044056,,sample name:ES1 EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044056,DRX045208,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>128</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044056,,,,425549011.0,3275261.0,DRR050166,0:129.93,A:126640704;C:86415371;G:90822163;T:121670773;N:0,129,,,,126640704,86415371,90822163,121670773,0,DRX045208,DRS025833,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80223,,0.31429,,0.85861,,0.5272,,57,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
97,DRR050165,DRX045207,DRS025832,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 1,SAMD00044055,,sample name:ES1 EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044055,DRX045207,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>147</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044055,,,,584599765.0,3941083.0,DRR050165,0:148.33,A:164329030;C:129885620;G:136727379;T:153657736;N:0,148,,,,164329030,129885620,136727379,153657736,0,DRX045207,DRS025832,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.83769,,0.25395,,0.83116,,0.52784,,185,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
98,DRR050164,DRX045206,DRS025831,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 3,SAMD00044054,,sample name:EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044054,DRX045206,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>88</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044054,,,,343014114.0,3827762.0,DRR050164,0:89.61,A:99421434;C:73070267;G:77738821;T:92783592;N:0,89,,,,99421434,73070267,77738821,92783592,0,DRX045206,DRS025831,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.78953,,0.25529,,0.87367,,0.52148,,24,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
99,DRR050163,DRX045205,DRS025830,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 2,SAMD00044053,,sample name:EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044053,DRX045205,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>137</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044053,,,,533069427.0,3824140.0,DRR050163,0:139.40,A:152608173;C:113928273;G:120051739;T:146481242;N:0,139,,,,152608173,113928273,120051739,146481242,0,DRX045205,DRS025830,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80412,,0.26768,,0.85338,,0.52255,,245,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
100,DRR050162,DRX045204,DRS025829,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 1,SAMD00044052,,sample name:EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044052,DRX045204,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>113</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044052,,,,478262965.0,4224064.0,DRR050162,0:113.22,A:136348264;C:104872341;G:113114502;T:123927858;N:0,113,,,,136348264,104872341,113114502,123927858,0,DRX045204,DRS025829,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.86947,,0.29839,,0.83317,,0.51453,,80,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
282,DRR179616,DRX170142,DRS185505,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 2,Fin xanthophore 03,SAMD00172019,,sample name:Zebrafish pigment cell 06|cell type:Xanthophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172019,DRX170142,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>232</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172019,,,,376558775.0,1624500.0,DRR179616,0:231.80,A:107837072;C:79508449;G:79372899;T:109840355;N:0,231,,,,107837072,79508449,79372899,109840355,0,DRX170142,DRS185505,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.86944,,0.10951,,0.90425,,0.59385,,311,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
283,DRR179615,DRX170141,DRS185504,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin xanthophore 02,SAMD00172018,,sample name:Zebrafish pigment cell 05|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172018,DRX170141,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>243</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172018,,,,515115515.0,2124170.0,DRR179615,0:242.50,A:138421982;C:119032803;G:119412227;T:138248503;N:0,242,,,,138421982,119032803,119412227,138248503,0,DRX170141,DRS185504,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.88998,,0.05858,,0.88051,,0.50917,,284,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
284,DRR179614,DRX170140,DRS185503,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin xanthophore 01,SAMD00172017,,sample name:Zebrafish pigment cell 04|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172017,DRX170140,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>247</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172017,,,,371242152.0,1504407.0,DRR179614,0:246.77,A:99341086;C:86126839;G:86264882;T:99509345;N:0,246,,,,99341086,86126839,86264882,99509345,0,DRX170140,DRS185503,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.88672,,0.06422,,0.85679,,0.5066,,56,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
285,DRR179613,DRX170139,DRS185502,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 2,Fin melanophore 03,SAMD00172016,,sample name:Zebrafish pigment cell 03|cell type:Melanophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172016,DRX170139,Zebrafish fin melanophore 03,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>248</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172016,,,,342802993.0,1585538.0,DRR179613,0:216.21,A:90833658;C:80789744;G:80463233;T:90716358;N:0,216,,,,90833658,80789744,80463233,90716358,0,DRX170139,DRS185502,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.8312,,0.03528,,0.88605,,0.47299,,285,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
286,DRR179612,DRX170138,DRS185501,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin melanophore 02,SAMD00172015,,sample name:Zebrafish pigment cell 02|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172015,DRX170138,Zebrafish fin melanophore 02,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>216</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172015,,,,538412675.0,2168231.0,DRR179612,0:248.32,A:147128403;C:121854818;G:121564109;T:147865345;N:0,248,,,,147128403,121854818,121564109,147865345,0,DRX170138,DRS185501,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.89106,,0.07081,,0.89286,,0.5935,,283,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
287,DRR179611,DRX170137,DRS185500,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin melanophore 01,SAMD00172014,,sample name:Zebrafish pigment cell 01|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172014,DRX170137,Zebrafish fin melanophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>215</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172014,,,,282446840.0,1311431.0,DRR179611,0:215.37,A:74927237;C:66575483;G:66161471;T:74782649;N:0,215,,,,74927237,66575483,66161471,74782649,0,DRX170137,DRS185500,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.85938,,0.0335,,0.89248,,0.58813,,274,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
5795,ERR1698352,ERX1767860,ERS1417534,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 012 up 058 12,SAMEA4518355,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518355|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 012 up 058 12|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 012 up 058 12|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 012 up 058 12 s,IonXpressRNA 012 up 058 12 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_012_up_058_12.fastq.gz,fastq,2535299006.0,33956077.0,E MTAB 5173:IonXpressRNA 012 up 058 12,0:74.66,A:719061985;C:581906269;G:579932234;T:654398518;N:0,74,,,,719061985,581906269,579932234,654398518,0,ERX1767860,ERS1417534,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.7343,,0.34119,,0.7359,,0.48406,,66,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5796,ERR1698351,ERX1767859,ERS1417533,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 011 up 058 11,SAMEA4518354,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518354|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 011 up 058 11|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 011 up 058 11|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 011 up 058 11 s,IonXpressRNA 011 up 058 11 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_011_up_058_11.fastq.gz,fastq,3400774471.0,38709756.0,E MTAB 5173:IonXpressRNA 011 up 058 11,0:87.85,A:948991439;C:793389977;G:792539547;T:865853508;N:0,87,,,,948991439,793389977,792539547,865853508,0,ERX1767859,ERS1417533,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.63968,,0.27033,,0.75213,,0.47966,,139,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5797,ERR1698350,ERX1767858,ERS1417532,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 010 up 058 10,SAMEA4518353,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518353|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 010 up 058 10|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 010 up 058 10|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 010 up 058 10 s,IonXpressRNA 010 up 058 10 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_010_up_058_10.fastq.gz,fastq,3502667998.0,39204781.0,E MTAB 5173:IonXpressRNA 010 up 058 10,0:89.34,A:976977303;C:803330255;G:808731995;T:913628445;N:0,89,,,,976977303,803330255,808731995,913628445,0,ERX1767858,ERS1417532,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.65846,,0.2815,,0.74028,,0.47784,,86,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5798,ERR1698349,ERX1767857,ERS1417531,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 009 up 058 9,SAMEA4518352,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518352|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 009 up 058 9|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 009 up 058 9|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 009 up 058 9 s,IonXpressRNA 009 up 058 9 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_009_up_058_9.fastq.gz,fastq,3575088264.0,39745481.0,E MTAB 5173:IonXpressRNA 009 up 058 9,0:89.95,A:1011474126;C:809896078;G:807471974;T:946246086;N:0,89,,,,1011474126,809896078,807471974,946246086,0,ERX1767857,ERS1417531,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.65266,,0.30274,,0.75286,,0.48527,,94,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5799,ERR1698348,ERX1767856,ERS1417530,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 008 up 058 8,SAMEA4518351,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518351|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 008 up 058 8|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 008 up 058 8|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 008 up 058 8 s,IonXpressRNA 008 up 058 8 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_008_up_058_8.fastq.gz,fastq,3259710114.0,38530802.0,E MTAB 5173:IonXpressRNA 008 up 058 8,0:84.60,A:916053004;C:755694888;G:751125332;T:836836890;N:0,84,,,,916053004,755694888,751125332,836836890,0,ERX1767856,ERS1417530,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.70995,,0.31365,,0.74781,,0.48846,,61,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5800,ERR1698347,ERX1767855,ERS1417529,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 007 up 058 7,SAMEA4518350,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518350|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 007 up 058 7|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 007 up 058 7|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 007 up 058 7 s,IonXpressRNA 007 up 058 7 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_007_up_058_7.fastq.gz,fastq,2307842164.0,28984666.0,E MTAB 5173:IonXpressRNA 007 up 058 7,0:79.62,A:634041732;C:548565089;G:545418985;T:579816358;N:0,79,,,,634041732,548565089,545418985,579816358,0,ERX1767855,ERS1417529,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.67542,,0.2817,,0.74168,,0.47224,,37,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5801,ERR1698346,ERX1767854,ERS1417528,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 006 up 058 6,SAMEA4518349,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518349|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 006 up 058 6|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 006 up 058 6|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 006 up 058 6 s,IonXpressRNA 006 up 058 6 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_006_up_058_6.fastq.gz,fastq,2239484857.0,27021234.0,E MTAB 5173:IonXpressRNA 006 up 058 6,0:82.88,A:637326624;C:506830056;G:503508207;T:591819970;N:0,82,,,,637326624,506830056,503508207,591819970,0,ERX1767854,ERS1417528,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.66441,,0.31904,,0.74905,,0.47154,,122,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5802,ERR1698345,ERX1767853,ERS1417527,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 005 up 058 5,SAMEA4518348,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518348|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 005 up 058 5|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 005 up 058 5|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 005 up 058 5 s,IonXpressRNA 005 up 058 5 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_005_up_058_5.fastq.gz,fastq,2920608487.0,39573075.0,E MTAB 5173:IonXpressRNA 005 up 058 5,0:73.80,A:814851327;C:678116994;G:691911192;T:735728974;N:0,73,,,,814851327,678116994,691911192,735728974,0,ERX1767853,ERS1417527,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.60005,,0.25542,,0.76481,,0.4886,,12,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5803,ERR1698344,ERX1767852,ERS1417526,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 004 up 058 4,SAMEA4518347,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518347|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 004 up 058 4|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 004 up 058 4|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 004 up 058 4 s,IonXpressRNA 004 up 058 4 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_004_up_058_4.fastq.gz,fastq,2989727396.0,37953454.0,E MTAB 5173:IonXpressRNA 004 up 058 4,0:78.77,A:802963810;C:722434772;G:742850530;T:721478284;N:0,78,,,,802963810,722434772,742850530,721478284,0,ERX1767852,ERS1417526,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.76402,,0.32503,,0.74241,,0.4815,,128,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5804,ERR1698343,ERX1767851,ERS1417525,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 003 up 058 3,SAMEA4518346,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518346|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 003 up 058 3|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 003 up 058 3|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 003 up 058 3 s,IonXpressRNA 003 up 058 3 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_003_up_058_3.fastq.gz,fastq,4068383115.0,41996847.0,E MTAB 5173:IonXpressRNA 003 up 058 3,0:96.87,A:1133167706;C:944306379;G:948626944;T:1042282086;N:0,96,,,,1133167706,944306379,948626944,1042282086,0,ERX1767851,ERS1417525,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.54804,,0.22334,,0.76353,,0.49163,,93,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5805,ERR1698342,ERX1767850,ERS1417524,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 002 up 058 2,SAMEA4518345,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518345|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 002 up 058 2|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 002 up 058 2|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 002 up 058 2 s,IonXpressRNA 002 up 058 2 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_002_up_058_2.fastq.gz,fastq,2679963893.0,33552723.0,E MTAB 5173:IonXpressRNA 002 up 058 2,0:79.87,A:709092431;C:635329399;G:670478210;T:665063853;N:0,79,,,,709092431,635329399,670478210,665063853,0,ERX1767850,ERS1417524,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.43283,,0.18649,,0.81178,,0.52885,,116,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5806,ERR1698341,ERX1767849,ERS1417523,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 001 up 058 1,SAMEA4518344,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518344|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 001 up 058 1|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 001 up 058 1|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 001 up 058 1 s,IonXpressRNA 001 up 058 1 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_001_up_058_1.fastq.gz,fastq,3358902499.0,39857024.0,E MTAB 5173:IonXpressRNA 001 up 058 1,0:84.27,A:933405205;C:784111716;G:780404241;T:860981337;N:0,84,,,,933405205,784111716,780404241,860981337,0,ERX1767849,ERS1417523,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.71789,,0.33159,,0.76619,,0.514,,56,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
31610,SRR28480662,SRX24083226,SRS20872880,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 10bp,,zebrafish C11 65.25% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 10bp,sccp22,sccp22,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_010.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115996940.0,1032044.0,IonXpress 010.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.40,A:27435635;C:30752569;G:30166368;T:27642368;N:0,112,,,,27435635,30752569,30166368,27642368,0,SRX24083226,SRS20872880,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31611,SRR28480663,SRX24083225,SRS20872879,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 100bp,,zebrafish C11 65.25% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 100bp,sccp21,sccp21,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_009.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,93043813.0,828468.0,IonXpress 009.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.31,A:21877681;C:24819986;G:24178228;T:22167918;N:0,112,,,,21877681,24819986,24178228,22167918,0,SRX24083225,SRS20872879,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31612,SRR28480664,SRX24083224,SRS20872878,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 1,,zebrafish control 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 1,CK1,CK1,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_008.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,103344731.0,919663.0,IonXpress 008.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.37,A:24335657;C:27548197;G:27080320;T:24380557;N:0,112,,,,24335657,27548197,27080320,24380557,0,SRX24083224,SRS20872878,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31613,SRR28480665,SRX24083223,SRS20872877,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 8,,zebrafish control 8,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 8|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 8,CK8,CK8,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_064.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,1248739.0,12382.0,IonXpress 064.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:100.85,A:343287;C:282561;G:276446;T:346445;N:0,100,,,,343287,282561,276446,346445,0,SRX24083223,SRS20872877,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31614,SRR28480666,SRX24083222,SRS20872875,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.0001bp,,zebrafish C11H18Cl6 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.0001bp,sccp87,sccp87,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_063.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,85118924.0,764363.0,IonXpress 063.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.36,A:20271638;C:22447929;G:22188225;T:20211132;N:0,111,,,,20271638,22447929,22188225,20211132,0,SRX24083222,SRS20872875,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31615,SRR28480667,SRX24083221,SRS20872876,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.001bp,,zebrafish C11H18Cl6 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.001bp,sccp86,sccp86,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_062.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100020739.0,887080.0,IonXpress 062.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.75,A:23887649;C:26321654;G:25886408;T:23925028;N:0,112,,,,23887649,26321654,25886408,23925028,0,SRX24083221,SRS20872876,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31616,SRR28480668,SRX24083220,SRS20872873,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.01bp,,zebrafish C11H18Cl6 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.01bp,sccp85,sccp85,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_061.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97468627.0,871705.0,IonXpress 061.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.81,A:23208366;C:25629536;G:25319083;T:23311642;N:0,111,,,,23208366,25629536,25319083,23311642,0,SRX24083220,SRS20872873,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31617,SRR28480669,SRX24083219,SRS20872874,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.0001bp,,zebrafish C10 65.02% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.0001bp,sccp17,sccp17,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_007.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,98520761.0,872099.0,IonXpress 007.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.97,A:23295910;C:26225214;G:25736839;T:23262798;N:0,112,,,,23295910,26225214,25736839,23262798,0,SRX24083219,SRS20872874,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31618,SRR28480670,SRX24083218,SRS20872872,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.1bp,,zebrafish C11H18Cl6 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.1bp,sccp84,sccp84,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_060.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101362655.0,911931.0,IonXpress 060.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.15,A:24332766;C:26520366;G:26180006;T:24329517;N:0,111,,,,24332766,26520366,26180006,24329517,0,SRX24083218,SRS20872872,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31619,SRR28480671,SRX24083217,SRS20872871,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 1bp,,zebrafish C11H18Cl6 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 1bp,sccp83,sccp83,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_059.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100303496.0,903897.0,IonXpress 059.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.97,A:24088149;C:26263021;G:26004101;T:23948225;N:0,110,,,,24088149,26263021,26004101,23948225,0,SRX24083217,SRS20872871,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31620,SRR28480672,SRX24083216,SRS20872870,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 10bp,,zebrafish C11H18Cl6 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 10bp,sccp82,sccp82,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_058.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115137934.0,1041398.0,IonXpress 058.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.56,A:27558871;C:30238935;G:29677704;T:27662424;N:0,110,,,,27558871,30238935,29677704,27662424,0,SRX24083216,SRS20872870,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31621,SRR28480673,SRX24083215,SRS20872868,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 100bp,,zebrafish C11H18Cl6 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 100bp,sccp81,sccp81,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_057.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97024081.0,870349.0,IonXpress 057.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.48,A:23039592;C:25636462;G:25229252;T:23118775;N:0,111,,,,23039592,25636462,25229252,23118775,0,SRX24083215,SRS20872868,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31622,SRR28480674,SRX24083214,SRS20872869,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 7,,zebrafish control 7,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 7|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 7,CK7,CK7,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_056.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102043702.0,904558.0,IonXpress 056.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.81,A:24197994;C:26938896;G:26614626;T:24292186;N:0,112,,,,24197994,26938896,26614626,24292186,0,SRX24083214,SRS20872869,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31623,SRR28480675,SRX24083213,SRS20872867,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.0001bp,,zebrafish C13H20Cl8 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.0001bp,sccp77,sccp77,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_055.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,87029779.0,773209.0,IonXpress 055.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.56,A:20625019;C:22910646;G:22761997;T:20732117;N:0,112,,,,20625019,22910646,22761997,20732117,0,SRX24083213,SRS20872867,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31624,SRR28480676,SRX24083212,SRS20872866,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.001bp,,zebrafish C13H20Cl8 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.001bp,sccp76,sccp76,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_054.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110378504.0,977343.0,IonXpress 054.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.94,A:26221466;C:29150847;G:28715262;T:26290929;N:0,112,,,,26221466,29150847,28715262,26290929,0,SRX24083212,SRS20872866,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31625,SRR28480677,SRX24083211,SRS20872865,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.01bp,,zebrafish C13H20Cl8 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.01bp,sccp75,sccp75,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_053.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,96397023.0,855195.0,IonXpress 053.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.72,A:22971501;C:25417770;G:25009533;T:22998219;N:0,112,,,,22971501,25417770,25009533,22998219,0,SRX24083211,SRS20872865,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31626,SRR28480678,SRX24083210,SRS20872864,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.1bp,,zebrafish C13H20Cl8 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.1bp,sccp74,sccp74,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_052.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,95954965.0,851203.0,IonXpress 052.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.73,A:22986581;C:25153781;G:24711283;T:23103320;N:0,112,,,,22986581,25153781,24711283,23103320,0,SRX24083210,SRS20872864,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31627,SRR28480679,SRX24083209,SRS20872861,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 1bp,,zebrafish C13H20Cl8 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 1bp,sccp73,sccp73,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_051.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102573446.0,908806.0,IonXpress 051.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.87,A:24644043;C:26951588;G:26384474;T:24593341;N:0,112,,,,24644043,26951588,26384474,24593341,0,SRX24083209,SRS20872861,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31628,SRR28480680,SRX24083208,SRS20872862,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.001bp,,zebrafish C10 65.02% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.001bp,sccp16,sccp16,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_006.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108392278.0,960577.0,IonXpress 006.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.84,A:25539867;C:28930494;G:28352601;T:25569316;N:0,112,,,,25539867,28930494,28352601,25569316,0,SRX24083208,SRS20872862,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31629,SRR28480681,SRX24083207,SRS20872863,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 10bp,,zebrafish C13H20Cl8 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 10bp,sccp72,sccp72,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_050.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,3966818.0,36367.0,IonXpress 050.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:109.08,A:964317;C:1025339;G:1008928;T:968234;N:0,109,,,,964317,1025339,1008928,968234,0,SRX24083207,SRS20872863,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31630,SRR28480682,SRX24083206,SRS20872860,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 100bp,,zebrafish C13H20Cl8 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 100bp,sccp71,sccp71,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_049.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109404410.0,969450.0,IonXpress 049.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.85,A:25934260;C:28861104;G:28479919;T:26129127;N:0,112,,,,25934260,28861104,28479919,26129127,0,SRX24083206,SRS20872860,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31631,SRR28480683,SRX24083205,SRS20872859,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 6,,zebrafish control 6,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 6,CK6,CK6,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_048.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110491023.0,978930.0,IonXpress 048.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.87,A:26203210;C:29193121;G:28716928;T:26377764;N:0,112,,,,26203210,29193121,28716928,26377764,0,SRX24083205,SRS20872859,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31632,SRR28480684,SRX24083204,SRS20872858,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.0001bp,,zebrafish C12H18Cl8 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.0001bp,sccp67,sccp67,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_047.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,87051784.0,765553.0,IonXpress 047.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.71,A:20538118;C:22989270;G:22623611;T:20900785;N:0,113,,,,20538118,22989270,22623611,20900785,0,SRX24083204,SRS20872858,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31633,SRR28480685,SRX24083203,SRS20872857,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.001bp,,zebrafish C12H18Cl8 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.001bp,sccp66,sccp66,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_046.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101355324.0,894473.0,IonXpress 046.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.31,A:24063826;C:26807513;G:26239594;T:24244391;N:0,113,,,,24063826,26807513,26239594,24244391,0,SRX24083203,SRS20872857,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31634,SRR28480686,SRX24083202,SRS20872856,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.01bp,,zebrafish C12H18Cl8 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.01bp,sccp65,sccp65,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_045.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,106816865.0,945364.0,IonXpress 045.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.99,A:25408018;C:28284679;G:27734471;T:25389697;N:0,112,,,,25408018,28284679,27734471,25389697,0,SRX24083202,SRS20872856,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31635,SRR28480687,SRX24083201,SRS20872855,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.1bp,,zebrafish C12H18Cl8 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.1bp,sccp64,sccp64,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_044.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,96444077.0,846020.0,IonXpress 044.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:114.00,A:23090892;C:25396368;G:24751151;T:23205666;N:0,114,,,,23090892,25396368,24751151,23205666,0,SRX24083201,SRS20872855,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31636,SRR28480688,SRX24083200,SRS20872854,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 1bp,,zebrafish C12H18Cl8 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 1bp,sccp63,sccp63,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_043.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109842592.0,979956.0,IonXpress 043.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.09,A:26296605;C:28856810;G:28387647;T:26301530;N:0,112,,,,26296605,28856810,28387647,26301530,0,SRX24083200,SRS20872854,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31637,SRR28480689,SRX24083199,SRS20872853,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 10bp,,zebrafish C12H18Cl8 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 10bp,sccp62,sccp62,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_042.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,104749712.0,928387.0,IonXpress 042.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.83,A:24853206;C:27526121;G:27117065;T:25253320;N:0,112,,,,24853206,27526121,27117065,25253320,0,SRX24083199,SRS20872853,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31638,SRR28480690,SRX24083198,SRS20872851,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 100bp,,zebrafish C12H18Cl8 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 100bp,sccp61,sccp61,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_041.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,107104635.0,950614.0,IonXpress 041.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.67,A:25435794;C:28220207;G:27928474;T:25520160;N:0,112,,,,25435794,28220207,27928474,25520160,0,SRX24083198,SRS20872851,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31639,SRR28480691,SRX24083197,SRS20872852,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.01bp,,zebrafish C10 65.02% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.01bp,sccp15,sccp15,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_005.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109950143.0,982487.0,IonXpress 005.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.91,A:25816549;C:29220009;G:28779207;T:26134378;N:0,111,,,,25816549,29220009,28779207,26134378,0,SRX24083197,SRS20872852,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31640,SRR28480692,SRX24083196,SRS20872850,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 5,,zebrafish control 5,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 5,CK5,CK5,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_040.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,122039187.0,1080433.0,IonXpress 040.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.95,A:28853507;C:32430101;G:31750885;T:29004694;N:0,112,,,,28853507,32430101,31750885,29004694,0,SRX24083196,SRS20872850,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31641,SRR28480693,SRX24083195,SRS20872849,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.0001bp,,zebrafish C10 13 63.0% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.0001bp,sccp57,sccp57,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_039.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,88344791.0,788912.0,IonXpress 039.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.98,A:20796976;C:23423614;G:23017973;T:21106228;N:0,111,,,,20796976,23423614,23017973,21106228,0,SRX24083195,SRS20872849,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31642,SRR28480694,SRX24083194,SRS20872848,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.001bp,,zebrafish C10 13 63.0% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.001bp,sccp56,sccp56,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_038.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,98021104.0,864236.0,IonXpress 038.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.42,A:23137220;C:26142070;G:25287236;T:23454578;N:0,113,,,,23137220,26142070,25287236,23454578,0,SRX24083194,SRS20872848,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31643,SRR28480695,SRX24083193,SRS20872847,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.01bp,,zebrafish C10 13 63.0% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.01bp,sccp55,sccp55,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_037.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108199442.0,958837.0,IonXpress 037.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.84,A:25771016;C:28607370;G:28048727;T:25772329;N:0,112,,,,25771016,28607370,28048727,25772329,0,SRX24083193,SRS20872847,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31644,SRR28480696,SRX24083192,SRS20872845,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.1bp,,zebrafish C10 13 63.0% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.1bp,sccp54,sccp54,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_036.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,105458972.0,934128.0,IonXpress 036.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.90,A:24924433;C:27906991;G:27340010;T:25287538;N:0,112,,,,24924433,27906991,27340010,25287538,0,SRX24083192,SRS20872845,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31645,SRR28480697,SRX24083191,SRS20872846,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 1bp,,zebrafish C10 13 63.0% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 1bp,sccp53,sccp53,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_035.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109362618.0,968693.0,IonXpress 035.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.90,A:26005653;C:28896654;G:28371236;T:26089075;N:0,112,,,,26005653,28896654,28371236,26089075,0,SRX24083191,SRS20872846,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31646,SRR28480698,SRX24083190,SRS20872844,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 10bp,,zebrafish C10 13 63.0% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 10bp,sccp52,sccp52,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_034.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,150999296.0,1329642.0,IonXpress 034.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.56,A:35801710;C:39912702;G:39422840;T:35862044;N:0,113,,,,35801710,39912702,39422840,35862044,0,SRX24083190,SRS20872844,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31647,SRR28480699,SRX24083189,SRS20872843,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 100bp,,zebrafish C10 13 63.0% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 100bp,sccp51,sccp51,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_033.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,118326657.0,1050834.0,IonXpress 033.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.60,A:28048191;C:31348902;G:30800438;T:28129126;N:0,112,,,,28048191,31348902,30800438,28129126,0,SRX24083189,SRS20872843,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31648,SRR28480700,SRX24083188,SRS20872842,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 4,,zebrafish control 4,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 4,CK4,CK4,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_032.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108504007.0,962521.0,IonXpress 032.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.73,A:25803971;C:28561460;G:28211351;T:25927225;N:0,112,,,,25803971,28561460,28211351,25927225,0,SRX24083188,SRS20872842,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31649,SRR28480701,SRX24083187,SRS20872841,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.0001bp,,zebrafish C10 13 51.5% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.0001bp,sccp47,sccp47,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_031.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,106852149.0,944612.0,IonXpress 031.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.12,A:25364517;C:28191855;G:27708782;T:25586995;N:0,113,,,,25364517,28191855,27708782,25586995,0,SRX24083187,SRS20872841,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31650,SRR28480702,SRX24083186,SRS20872840,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.1bp,,zebrafish C10 65.02% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.1bp,sccp14,sccp14,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_004.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101091383.0,892906.0,IonXpress 004.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.22,A:23773356;C:26804183;G:26509419;T:24004425;N:0,113,,,,23773356,26804183,26509419,24004425,0,SRX24083186,SRS20872840,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31651,SRR28480703,SRX24083185,SRS20872839,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.001bp,,zebrafish C10 13 51.5% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.001bp,sccp46,sccp46,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_030.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108108886.0,950394.0,IonXpress 030.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.75,A:25735144;C:28605366;G:28028649;T:25739727;N:0,113,,,,25735144,28605366,28028649,25739727,0,SRX24083185,SRS20872839,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31652,SRR28480704,SRX24083184,SRS20872838,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.01bp,,zebrafish C10 13 51.5% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.01bp,sccp45,sccp45,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_029.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102776913.0,895617.0,IonXpress 029.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:114.76,A:24243608;C:27324915;G:26735990;T:24472400;N:0,114,,,,24243608,27324915,26735990,24472400,0,SRX24083184,SRS20872838,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31653,SRR28480705,SRX24083183,SRS20872837,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.1bp,,zebrafish C10 13 51.5% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.1bp,sccp44,sccp44,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_028.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,111374565.0,993365.0,IonXpress 028.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.12,A:26443074;C:29437482;G:29021416;T:26472593;N:0,112,,,,26443074,29437482,29021416,26472593,0,SRX24083183,SRS20872837,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31654,SRR28480706,SRX24083182,SRS20872835,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 1bp,,zebrafish C10 13 51.5% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 1bp,sccp43,sccp43,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_027.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,353606252.0,3115856.0,IonXpress 027.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.49,A:83702877;C:93175606;G:92029314;T:84698455;N:0,113,,,,83702877,93175606,92029314,84698455,0,SRX24083182,SRS20872835,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31655,SRR28480707,SRX24083181,SRS20872836,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 10bp,,zebrafish C10 13 51.5% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 10bp,sccp42,sccp42,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_026.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,111996140.0,1011611.0,IonXpress 026.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.71,A:26580599;C:29481350;G:29122266;T:26811925;N:0,110,,,,26580599,29481350,29122266,26811925,0,SRX24083181,SRS20872836,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31656,SRR28480708,SRX24083180,SRS20872834,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 100bp,,zebrafish C10 13 51.5% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 100bp,sccp41,sccp41,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_025.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,107004692.0,958688.0,IonXpress 025.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.62,A:25315357;C:28424669;G:27858900;T:25405766;N:0,111,,,,25315357,28424669,27858900,25405766,0,SRX24083180,SRS20872834,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31657,SRR28480709,SRX24083179,SRS20872833,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 3,,zebrafish control 3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 3,CK3,CK3,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_024.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115240733.0,1026590.0,IonXpress 024.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.26,A:27141618;C:30563585;G:30140946;T:27394584;N:0,112,,,,27141618,30563585,30140946,27394584,0,SRX24083179,SRS20872833,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31658,SRR28480710,SRX24083178,SRS20872832,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.0001bp,,zebrafish C13 65.18% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.0001bp,sccp37,sccp37,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_023.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,112322500.0,989665.0,IonXpress 023.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.50,A:26507724;C:29696631;G:29314989;T:26803156;N:0,113,,,,26507724,29696631,29314989,26803156,0,SRX24083178,SRS20872832,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31659,SRR28480711,SRX24083177,SRS20872831,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.001bp,,zebrafish C13 65.18% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.001bp,sccp36,sccp36,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_022.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,113636579.0,1004782.0,IonXpress 022.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.10,A:26801369;C:30143688;G:29637971;T:27053551;N:0,113,,,,26801369,30143688,29637971,27053551,0,SRX24083177,SRS20872831,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31660,SRR28480712,SRX24083176,SRS20872830,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.01bp,,zebrafish C13 65.18% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.01bp,sccp35,sccp35,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_021.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,144380281.0,1275186.0,IonXpress 021.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.22,A:34269776;C:38139595;G:37631581;T:34339329;N:0,113,,,,34269776,38139595,37631581,34339329,0,SRX24083176,SRS20872830,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31661,SRR28480713,SRX24083175,SRS20872829,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 1bp,,zebrafish C10 65.02% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 1bp,sccp13,sccp13,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_003.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102583823.0,900891.0,IonXpress 003.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.87,A:24139707;C:27392431;G:26685917;T:24365768;N:0,113,,,,24139707,27392431,26685917,24365768,0,SRX24083175,SRS20872829,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31662,SRR28480714,SRX24083174,SRS20872828,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.1bp,,zebrafish C13 65.18% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.1bp,sccp34,sccp34,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_020.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,124781601.0,1107608.0,IonXpress 020.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.66,A:29614536;C:32815136;G:32647459;T:29704470;N:0,112,,,,29614536,32815136,32647459,29704470,0,SRX24083174,SRS20872828,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31663,SRR28480715,SRX24083173,SRS20872827,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 1bp,,zebrafish C13 65.18% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 1bp,sccp33,sccp33,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_019.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,91354022.0,810962.0,IonXpress 019.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.65,A:21489915;C:24311006;G:23804472;T:21748629;N:0,112,,,,21489915,24311006,23804472,21748629,0,SRX24083173,SRS20872827,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31664,SRR28480716,SRX24083172,SRS20872826,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 10bp,,zebrafish C13 65.18% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 10bp,sccp32,sccp32,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_018.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,99248975.0,882898.0,IonXpress 018.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.41,A:23400094;C:26451591;G:25795741;T:23601549;N:0,112,,,,23400094,26451591,25795741,23601549,0,SRX24083172,SRS20872826,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31665,SRR28480717,SRX24083171,SRS20872825,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 100bp,,zebrafish C13 65.18% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 100bp,sccp31,sccp31,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_017.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,116164616.0,1029965.0,IonXpress 017.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.79,A:27414271;C:30849960;G:30325830;T:27574555;N:0,112,,,,27414271,30849960,30325830,27574555,0,SRX24083171,SRS20872825,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31666,SRR28480718,SRX24083170,SRS20872824,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 2,,zebrafish control 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 2,CK2,CK2,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_016.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97329986.0,867628.0,IonXpress 016.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.18,A:23139609;C:25709723;G:25171947;T:23308707;N:0,112,,,,23139609,25709723,25171947,23308707,0,SRX24083170,SRS20872824,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31667,SRR28480719,SRX24083169,SRS20872823,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.0001bp,,zebrafish C11 65.25% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.0001bp,sccp27,sccp27,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_015.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,95116322.0,857687.0,IonXpress 015.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.90,A:22496457;C:25247529;G:24767207;T:22605129;N:0,110,,,,22496457,25247529,24767207,22605129,0,SRX24083169,SRS20872823,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31668,SRR28480720,SRX24083168,SRS20872822,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.001bp,,zebrafish C11 65.25% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.001bp,sccp26,sccp26,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_014.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100213781.0,882391.0,IonXpress 014.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.57,A:23838109;C:26629449;G:25891916;T:23854307;N:0,113,,,,23838109,26629449,25891916,23854307,0,SRX24083168,SRS20872822,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31669,SRR28480721,SRX24083167,SRS20872820,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.01bp,,zebrafish C11 65.25% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.01bp,sccp25,sccp25,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_013.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110879716.0,991963.0,IonXpress 013.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.78,A:26185034;C:29382954;G:28898661;T:26413067;N:0,111,,,,26185034,29382954,28898661,26413067,0,SRX24083167,SRS20872820,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31670,SRR28480722,SRX24083166,SRS20872821,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.1bp,,zebrafish C11 65.25% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.1bp,sccp24,sccp24,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_012.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,86622071.0,765510.0,IonXpress 012.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.16,A:20617429;C:23040948;G:22479932;T:20483762;N:0,113,,,,20617429,23040948,22479932,20483762,0,SRX24083166,SRS20872821,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31671,SRR28480723,SRX24083165,SRS20872819,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 1bp,,zebrafish C11 65.25% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 1bp,sccp23,sccp23,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_011.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,113129868.0,1006612.0,IonXpress 011.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.39,A:26916610;C:29806008;G:29493716;T:26913534;N:0,112,,,,26916610,29806008,29493716,26913534,0,SRX24083165,SRS20872819,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31672,SRR28480724,SRX24083164,SRS20872818,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 10bp,,zebrafish C10 65.02% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 10bp,sccp12,sccp12,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_002.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102651027.0,912042.0,IonXpress 002.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.55,A:24135735;C:27359201;G:26643032;T:24513059;N:0,112,,,,24135735,27359201,26643032,24513059,0,SRX24083164,SRS20872818,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31673,SRR28480725,SRX24083163,SRS20872817,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 100bp,,zebrafish C10 65.02% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 100bp,sccp11,sccp11,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_001.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,103648935.0,926414.0,IonXpress 001.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.88,A:24562676;C:27487365;G:26982312;T:24616582;N:0,111,,,,24562676,27487365,26982312,24616582,0,SRX24083163,SRS20872817,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33439,SRR30280831,SRX25741613,SRS22381131,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 10,BP10# DMSO 3,,strain:TU|isolate:90|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 10,BP10# DMSO 3,BP10# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-3.fastq.gz,fastq,92459659.0,929177.0,BP10# DMSO 3.fastq.gz,0:99.51,A:21511804;C:24897124;G:24440562;T:21610169;N:0,99,,,,21511804,24897124,24440562,21610169,0,SRX25741613,SRS22381131,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33440,SRR30280704,SRX25741612,SRS22381130,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 9,BP10# DMSO 2,,strain:TU|isolate:89|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 9,BP10# DMSO 2,BP10# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-2.fastq.gz,fastq,184067375.0,1813659.0,BP10# DMSO 2.fastq.gz,0:101.49,A:43014934;C:49110340;G:48560159;T:43381942;N:0,101,,,,43014934,49110340,48560159,43381942,0,SRX25741612,SRS22381130,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33441,SRR30280705,SRX25741611,SRS22381129,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 8,BP10# DMSO 1,,strain:TU|isolate:88|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 8,BP10# DMSO 1,BP10# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-1.fastq.gz,fastq,148237805.0,1464542.0,BP10# DMSO 1.fastq.gz,0:101.22,A:34729919;C:39397602;G:39251519;T:34858765;N:0,101,,,,34729919,39397602,39251519,34858765,0,SRX25741611,SRS22381129,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33442,SRR30280706,SRX25741610,SRS22381128,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 7,BP10# 7,,strain:TU|isolate:87|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 7,BP10# 7,BP10# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-7.fastq.gz,fastq,164490060.0,1636480.0,BP10# 7.fastq.gz,0:100.51,A:38838318;C:43438465;G:43456970;T:38756307;N:0,100,,,,38838318,43438465,43456970,38756307,0,SRX25741610,SRS22381128,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33443,SRR30280707,SRX25741609,SRS22381127,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 6,BP10# 6,,strain:TU|isolate:86|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 6,BP10# 6,BP10# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-6.fastq.gz,fastq,155194512.0,1505703.0,BP10# 6.fastq.gz,0:103.07,A:36677853;C:40887150;G:40906247;T:36723262;N:0,103,,,,36677853,40887150,40906247,36723262,0,SRX25741609,SRS22381127,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33444,SRR30280708,SRX25741608,SRS22381126,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 5,BP10# 5,,strain:TU|isolate:85|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 5,BP10# 5,BP10# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-5.fastq.gz,fastq,163104451.0,1593080.0,BP10# 5.fastq.gz,0:102.38,A:38629973;C:43080977;G:42996215;T:38397286;N:0,102,,,,38629973,43080977,42996215,38397286,0,SRX25741608,SRS22381126,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33445,SRR30280709,SRX25741607,SRS22381125,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 4,BP10# 4,,strain:TU|isolate:84|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 4,BP10# 4,BP10# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-4.fastq.gz,fastq,141101402.0,1409537.0,BP10# 4.fastq.gz,0:100.10,A:33334876;C:37175155;G:37298446;T:33292925;N:0,100,,,,33334876,37175155,37298446,33292925,0,SRX25741607,SRS22381125,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33446,SRR30280710,SRX25741606,SRS22381124,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 3,BP10# 3,,strain:TU|isolate:83|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 3,BP10# 3,BP10# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-3.fastq.gz,fastq,156294355.0,1507427.0,BP10# 3.fastq.gz,0:103.68,A:36910418;C:41342273;G:41169658;T:36872006;N:0,103,,,,36910418,41342273,41169658,36872006,0,SRX25741606,SRS22381124,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33447,SRR30280711,SRX25741605,SRS22381123,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 2,BP10# 2,,strain:TU|isolate:82|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 2,BP10# 2,BP10# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-2.fastq.gz,fastq,111628166.0,1080707.0,BP10# 2.fastq.gz,0:103.29,A:26410755;C:29627534;G:29253738;T:26336139;N:0,103,,,,26410755,29627534,29253738,26336139,0,SRX25741605,SRS22381123,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33448,SRR30280712,SRX25741604,SRS22381122,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 1,BP10# 1,,strain:TU|isolate:81|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 1,BP10# 1,BP10# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-1.fastq.gz,fastq,143973283.0,1411136.0,BP10# 1.fastq.gz,0:102.03,A:34301322;C:37717275;G:37805886;T:34148800;N:0,102,,,,34301322,37717275,37805886,34148800,0,SRX25741604,SRS22381122,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33449,SRR30280713,SRX25741603,SRS22381120,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 9,BP2# DMSO 2,,strain:TU|isolate:9|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 9,BP2# DMSO 2,BP2# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-DMSO-2.fastq.gz,fastq,121679118.0,1146532.0,BP2# DMSO 2.fastq.gz,0:106.13,A:28957172;C:31903260;G:31955173;T:28863513;N:0,106,,,,28957172,31903260,31955173,28863513,0,SRX25741603,SRS22381120,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33450,SRR30280714,SRX25741602,SRS22381121,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 10,BP8# DMSO 3,,strain:TU|isolate:80|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 10,BP8# DMSO 3,BP8# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-3.fastq.gz,fastq,116509377.0,1201618.0,BP8# DMSO 3.fastq.gz,0:96.96,A:27076619;C:31149115;G:31146213;T:27137430;N:0,96,,,,27076619,31149115,31146213,27137430,0,SRX25741602,SRS22381121,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures