rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
32926,SRR29498570,SRX25008882,SRS21709101,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M2b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:brain|identifier:M2b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,07,07,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M2b_R1.fq.gz M2b_R2.fq.gz,fastq fastq,9324874800.0,31082916.0,M2b R1.fq.gz,0:150 1:150,A:2073617286;C:2382074775;G:2948687855;T:1920389281;N:105603,150,150,,,2073617286,2382074775,2948687855,1920389281,105603,SRX25008882,SRS21709101,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.57388,0.29571,0.04187,0.10168,0.99506,0.99513,0.61677,0.60641,150,150,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
32928,SRR29498572,SRX25008880,SRS21709099,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M1b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:brain|identifier:M1b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,05,05,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M1b_R1.fq.gz M1b_R2.fq.gz,fastq fastq,7947472800.0,26491576.0,M1b R1.fq.gz,0:150 1:150,A:1764190500;C:1937842699;G:2595509352;T:1649839967;N:90282,150,150,,,1764190500,1937842699,2595509352,1649839967,90282,SRX25008880,SRS21709099,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.96542,0.21476,0.17288,0.05982,0.97289,0.99711,0.57845,0.611,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
32930,SRR29498574,SRX25008878,SRS21709097,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F2b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:brain|identifier:F2b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,03,03,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F2b_R1.fq.gz F2b_R2.fq.gz,fastq fastq,9249410100.0,30831367.0,F2b R1.fq.gz,0:150 1:150,A:2101671138;C:2272479255;G:2931272789;T:1943881150;N:105768,150,150,,,2101671138,2272479255,2931272789,1943881150,105768,SRX25008878,SRS21709097,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.96654,0.19343,0.23127,0.08081,0.95272,0.99326,0.63762,0.64901,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
32934,SRR29498578,SRX25008874,SRS21709093,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F1b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:brain|identifier:F1b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,01,01,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F1b_R2.fq.gz F1b_R1.fq.gz,fastq fastq,7995852300.0,26652841.0,F1b R1.fq.gz,0:150 1:150,A:1744452113;C:2053788787;G:2580416325;T:1617104387;N:90688,150,150,,,1744452113,2053788787,2580416325,1617104387,90688,SRX25008874,SRS21709093,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.96107,0.17798,0.16452,0.02921,0.96759,0.99677,0.66455,0.62672,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
48625,SRR7280652,SRX4184230,SRS3395609,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,,Telencephalon,Brain Telenc,,strain:AB|age:adult|sex:pooled male and female|tissue:Telencephalon|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: telencephalon,Brain Telenc,Brain Telenc,RNA from dissociated telencephalons of males and females,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Brain_Telenc_R1-125.fq.gz Brain_Telenc_R2-125.fq.gz,fastq fastq,71366993000.0,285467972.0,Brain Telenc R1 125.fq.gz,0:125 1:125,A:19965884492;C:15794543428;G:15865015134;T:19703234174;N:38315772,125,125,,,19965884492,15794543428,15865015134,19703234174,38315772,SRX4184230,SRS3395609,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.94146,0.94273,0.14194,0.14162,0.70167,0.70396,0.52125,0.51616,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Adult,Adult,Brain,Nervous System
48626,SRR7280653,SRX4184229,SRS3395610,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,,Cerebellum,Cerebellum,,strain:AB|age:adult|sex:pooled male and female|tissue:Cerebellum|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: cerebellum,Cerebellum,Cerebellum,RNA from dissociated cerebellum from males and females,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Cerebellum_R1-125.fq.gz Cerebellum_R2-125.fq.gz,fastq fastq,34135866750.0,136543467.0,Cerebellum R2 125.fq.gz,0:125 1:125,A:9659073468;C:7434102293;G:7478952142;T:9549216912;N:14521935,125,125,,,9659073468,7434102293,7478952142,9549216912,14521935,SRX4184229,SRS3395610,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.93517,0.93417,0.16496,0.16457,0.73695,0.73476,0.47363,0.48287,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Adult,Adult,Brain,Nervous System