rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
60,DRR032764,DRX029570,DRS049969,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr shield 2,SAMD00028161,,sample name:Dr shield 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:shield|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028161,DRX029570,Dr shield 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028161,,,,3644397900.0,36443979.0,DRR032764,0:100 1:0,A:986071173;C:842367218;G:837686080;T:978236607;N:36822,100,0,,,986071173,842367218,837686080,978236607,36822,DRX029570,DRS049969,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92419,,0.08269,,0.75558,,0.47863,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Gastrula,Embryo,Whole Organism,All anatomical structures
61,DRR032763,DRX029569,DRS049968,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr shield 1,SAMD00028160,,sample name:Dr shield 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:shield|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028160,DRX029569,Dr shield 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028160,,,,3834622000.0,38346220.0,DRR032763,0:100 1:0,A:1043352851;C:880011834;G:876775415;T:1034444253;N:37647,100,0,,,1043352851,880011834,876775415,1034444253,37647,DRX029569,DRS049968,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92305,,0.09126,,0.75481,,0.47587,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Gastrula,Embryo,Whole Organism,All anatomical structures
62,DRR032762,DRX029568,DRS049967,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 3,SAMD00028159,,sample name:Dr prime5 6 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028159,DRX029568,Dr prime5 6 3,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028159,,,,3903332800.0,39033328.0,DRR032762,0:100 1:0,A:1050045822;C:908538410;G:900588661;T:1044116537;N:43370,100,0,,,1050045822,908538410,900588661,1044116537,43370,DRX029568,DRS049967,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92761,,0.07976,,0.69126,,0.46568,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
63,DRR032761,DRX029567,DRS049966,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 2,SAMD00028158,,sample name:Dr prime5 6 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028158,DRX029567,Dr prime5 6 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028158,,,,3678549700.0,36785497.0,DRR032761,0:100 1:0,A:986526644;C:857762765;G:853417738;T:980801764;N:40789,100,0,,,986526644,857762765,853417738,980801764,40789,DRX029567,DRS049966,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92689,,0.07872,,0.6928,,0.46577,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
64,DRR032760,DRX029566,DRS049965,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 1,SAMD00028157,,sample name:Dr prime5 6 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028157,DRX029566,Dr prime5 6 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028157,,,,3863129500.0,38631295.0,DRR032760,0:100 1:0,A:1035240477;C:901625010;G:895370149;T:1030851937;N:41927,100,0,,,1035240477,901625010,895370149,1030851937,41927,DRX029566,DRS049965,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92337,,0.07522,,0.69315,,0.46516,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
65,DRR032759,DRX029565,DRS049964,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime25 2,SAMD00028156,,sample name:Dr prime25 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028156,DRX029565,Dr prime25 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028156,,,,3750136100.0,37501361.0,DRR032759,0:100 1:0,A:1013528040;C:866734984;G:862431819;T:1007403208;N:38049,100,0,,,1013528040,866734984,862431819,1007403208,38049,DRX029565,DRS049964,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92019,,0.09079,,0.68304,,0.47083,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
66,DRR032758,DRX029564,DRS049963,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime25 1,SAMD00028155,,sample name:Dr prime25 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028155,DRX029564,Dr prime25 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028155,,,,3544862700.0,35448627.0,DRR032758,0:100 1:0,A:952135895;C:825841753;G:821757889;T:945087927;N:39236,100,0,,,952135895,825841753,821757889,945087927,39236,DRX029564,DRS049963,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92229,,0.08344,,0.68525,,0.466,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
67,DRR032757,DRX029563,DRS049962,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 97 individuals,Dr bud 2,SAMD00028154,,sample name:Dr bud 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028154,DRX029563,Dr bud 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028154,,,,4104778200.0,41047782.0,DRR032757,0:100 1:0,A:1116316188;C:944738800;G:936257056;T:1107423486;N:42670,100,0,,,1116316188,944738800,936257056,1107423486,42670,DRX029563,DRS049962,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92945,,0.10493,,0.73407,,0.47824,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
68,DRR032756,DRX029562,DRS049961,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr bud 1,SAMD00028153,,sample name:Dr bud 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028153,DRX029562,Dr bud 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028153,,,,4540291000.0,45402910.0,DRR032756,0:100 1:0,A:1237914068;C:1042346110;G:1033172731;T:1226799791;N:58300,100,0,,,1237914068,1042346110,1033172731,1226799791,58300,DRX029562,DRS049961,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92628,,0.10478,,0.7391,,0.46461,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
69,DRR032755,DRX029561,DRS049960,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr 90epiboly 2,SAMD00028152,,sample name:Dr 90epiboly 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:90epiboly|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028152,DRX029561,Dr 90epiboly 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028152,,,,3572358600.0,35723586.0,DRR032755,0:100 1:0,A:971653450;C:821326559;G:816855636;T:962477457;N:45498,100,0,,,971653450,821326559,816855636,962477457,45498,DRX029561,DRS049960,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92485,,0.10642,,0.74213,,0.47012,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Gastrula,Embryo,Whole Organism,All anatomical structures
70,DRR032754,DRX029560,DRS049959,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr 90epiboly 1,SAMD00028151,,sample name:Dr 90epiboly 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:90epiboly|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028151,DRX029560,Dr 90epiboly 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028151,,,,3423980500.0,34239805.0,DRR032754,0:100 1:0,A:933088185;C:785251613;G:780911148;T:924686406;N:43148,100,0,,,933088185,785251613,780911148,924686406,43148,DRX029560,DRS049959,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92436,,0.10881,,0.74255,,0.47068,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Gastrula,Embryo,Whole Organism,All anatomical structures
71,DRR032753,DRX029559,DRS049958,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 114 individuals,Dr 8cell 2,SAMD00028150,,sample name:Dr 8cell 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:8cell|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028150,DRX029559,Dr 8cell 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028150,,,,3708921900.0,37089219.0,DRR032753,0:100 1:0,A:985502141;C:874161613;G:869551685;T:979663686;N:42775,100,0,,,985502141,874161613,869551685,979663686,42775,DRX029559,DRS049958,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.93329,,0.02366,,0.78896,,0.47447,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Cleavage,Embryo,Whole Organism,All anatomical structures
72,DRR032752,DRX029558,DRS049957,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 96 individuals,Dr 8cell 1,SAMD00028149,,sample name:Dr 8cell 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:8cell|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028149,DRX029558,Dr 8cell 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028149,,,,3666991200.0,36669912.0,DRR032752,0:100 1:0,A:976118513;C:862559696;G:858017821;T:970254302;N:40868,100,0,,,976118513,862559696,858017821,970254302,40868,DRX029558,DRS049957,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.934,,0.02403,,0.78877,,0.46902,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Cleavage,Embryo,Whole Organism,All anatomical structures
73,DRR032751,DRX029557,DRS049956,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr 75epiboly 2,SAMD00028148,,sample name:Dr 75epiboly 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:75epiboly|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028148,DRX029557,Dr 75epiboly 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028148,,,,3252021500.0,32520215.0,DRR032751,0:100 1:0,A:885527595;C:746750899;G:742907892;T:876794123;N:40991,100,0,,,885527595,746750899,742907892,876794123,40991,DRX029557,DRS049956,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92594,,0.10181,,0.74862,,0.47789,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Gastrula,Embryo,Whole Organism,All anatomical structures
74,DRR032750,DRX029556,DRS049955,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr 75epiboly 1,SAMD00028147,,sample name:Dr 75epiboly 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:75epiboly|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028147,DRX029556,Dr 75epiboly 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028147,,,,3785053700.0,37850537.0,DRR032750,0:100 1:0,A:1029014798;C:870946157;G:867537069;T:1017508684;N:46992,100,0,,,1029014798,870946157,867537069,1017508684,46992,DRX029556,DRS049955,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92346,,0.10046,,0.74921,,0.47295,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Gastrula,Embryo,Whole Organism,All anatomical structures
75,DRR032749,DRX029555,DRS049954,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 72h 2,SAMD00028146,,sample name:Dr 72h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:72h Protruding mouth|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028146,DRX029555,Dr 72h 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028146,,,,3429795800.0,34297958.0,DRR032749,0:100 1:0,A:928062015;C:792470305;G:786930881;T:922296289;N:36310,100,0,,,928062015,792470305,786930881,922296289,36310,DRX029555,DRS049954,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.91821,,0.09774,,0.65437,,0.46443,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Larval,Larval,Whole Organism,All anatomical structures
76,DRR032748,DRX029554,DRS049953,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 72h 1,SAMD00028145,,sample name:Dr 72h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:72h Protruding mouth|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028145,DRX029554,Dr 72h 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028145,,,,3897194500.0,38971945.0,DRR032748,0:100 1:0,A:1050989414;C:903225496;G:895783177;T:1047153493;N:42920,100,0,,,1050989414,903225496,895783177,1047153493,42920,DRX029554,DRS049953,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92211,,0.09393,,0.65486,,0.45971,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Larval,Larval,Whole Organism,All anatomical structures
77,DRR032747,DRX029553,DRS049952,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 6somite 2,SAMD00028144,,sample name:Dr 6somite 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:6somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028144,DRX029553,Dr 6somite 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028144,,,,3704431000.0,37044310.0,DRR032747,0:100 1:0,A:1001844161;C:856702913;G:850695568;T:995148798;N:39560,100,0,,,1001844161,856702913,850695568,995148798,39560,DRX029553,DRS049952,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92633,,0.09211,,0.72107,,0.47195,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
78,DRR032746,DRX029552,DRS049951,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 6somite 1,SAMD00028143,,sample name:Dr 6somite 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:6somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028143,DRX029552,Dr 6somite 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028143,,,,3529311900.0,35293119.0,DRR032746,0:100 1:0,A:953957996;C:816824469;G:811403696;T:947089530;N:36209,100,0,,,953957996,816824469,811403696,947089530,36209,DRX029552,DRS049951,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92437,,0.09257,,0.72113,,0.47004,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
79,DRR032745,DRX029551,DRS049950,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 60h 2,SAMD00028142,,sample name:Dr 60h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028142,DRX029551,Dr 60h 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028142,,,,3875337000.0,38753370.0,DRR032745,0:100 1:0,A:1042558903;C:899892111;G:896867583;T:1035981420;N:36983,100,0,,,1042558903,899892111,896867583,1035981420,36983,DRX029551,DRS049950,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.91891,,0.09445,,0.66156,,0.45564,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Hatching,Embryo,Whole Organism,All anatomical structures
80,DRR032744,DRX029550,DRS049949,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 60h 1,SAMD00028141,,sample name:Dr 60h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028141,DRX029550,Dr 60h 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028141,,,,3538468200.0,35384682.0,DRR032744,0:100 1:0,A:960664313;C:812459988;G:809014008;T:956295205;N:34686,100,0,,,960664313,812459988,809014008,956295205,34686,DRX029550,DRS049949,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.91388,,0.10346,,0.66076,,0.45203,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Hatching,Embryo,Whole Organism,All anatomical structures
81,DRR032743,DRX029549,DRS049948,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 5day 3,SAMD00028140,,sample name:Dr 5day 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:5day|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028140,DRX029549,Dr 5day 3,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028140,,,,3884716000.0,38847160.0,DRR032743,0:100 1:0,A:1040550584;C:905663425;G:904247323;T:1034215019;N:39649,100,0,,,1040550584,905663425,904247323,1034215019,39649,DRX029549,DRS049948,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92219,,0.08287,,0.65863,,0.47377,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Larval,Larval,Whole Organism,All anatomical structures
82,DRR032742,DRX029548,DRS049947,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 5day 2,SAMD00028139,,sample name:Dr 5day 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:5day|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028139,DRX029548,Dr 5day 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028139,,,,3893708700.0,38937087.0,DRR032742,0:100 1:0,A:1050850168;C:899863467;G:897224776;T:1045729184;N:41105,100,0,,,1050850168,899863467,897224776,1045729184,41105,DRX029548,DRS049947,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.91671,,0.0991,,0.65161,,0.47454,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Larval,Larval,Whole Organism,All anatomical structures
83,DRR032741,DRX029547,DRS049946,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 5day 1,SAMD00028138,,sample name:Dr 5day 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:5day|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028138,DRX029547,Dr 5day 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028138,,,,3807570600.0,38075706.0,DRR032741,0:100 1:0,A:1022590228;C:884655401;G:882546091;T:1017737883;N:40997,100,0,,,1022590228,884655401,882546091,1017737883,40997,DRX029547,DRS049946,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.9182,,0.09442,,0.65525,,0.46661,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Larval,Larval,Whole Organism,All anatomical structures
84,DRR032740,DRX029546,DRS049945,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 48h 2,SAMD00028137,,sample name:Dr 48h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028137,DRX029546,Dr 48h 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028137,,,,3702804700.0,37028047.0,DRR032740,0:100 1:0,A:993931475;C:862403562;G:857808891;T:988623734;N:37038,100,0,,,993931475,862403562,857808891,988623734,37038,DRX029546,DRS049945,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92508,,0.08526,,0.68349,,0.45769,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Hatching,Embryo,Whole Organism,All anatomical structures
85,DRR032739,DRX029545,DRS049944,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 48h 1,SAMD00028136,,sample name:Dr 48h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028136,DRX029545,Dr 48h 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028136,,,,3980240400.0,39802404.0,DRR032739,0:100 1:0,A:1070497788;C:925240883;G:920038728;T:1064422474;N:40527,100,0,,,1070497788,925240883,920038728,1064422474,40527,DRX029545,DRS049944,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92349,,0.08681,,0.67874,,0.46565,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Hatching,Embryo,Whole Organism,All anatomical structures
86,DRR032738,DRX029544,DRS049943,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr 32cell 2,SAMD00028135,,sample name:Dr 32cell 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:32cell|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028135,DRX029544,Dr 32cell 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028135,,,,3678713000.0,36787130.0,DRR032738,0:100 1:0,A:981005900;C:863203049;G:859660640;T:974807835;N:35576,100,0,,,981005900,863203049,859660640,974807835,35576,DRX029544,DRS049943,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.93302,,0.02468,,0.77441,,0.47485,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Cleavage,Embryo,Whole Organism,All anatomical structures
87,DRR032737,DRX029543,DRS049942,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 95 individuals,Dr 32cell 1,SAMD00028134,,sample name:Dr 32cell 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:32cell|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028134,DRX029543,Dr 32cell 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028134,,,,3870906500.0,38709065.0,DRR032737,0:100 1:0,A:1030407751;C:909948718;G:905608620;T:1024897443;N:43968,100,0,,,1030407751,909948718,905608620,1024897443,43968,DRX029543,DRS049942,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.93364,,0.02484,,0.77307,,0.47588,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Cleavage,Embryo,Whole Organism,All anatomical structures
88,DRR032736,DRX029542,DRS049941,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr zfs:0000015 2,SAMD00028133,,sample name:Dr zfs:0000015 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:zfs:0000015|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028133,DRX029542,Dr zfs:0000015 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028133,,,,3129028500.0,31290285.0,DRR032736,0:100 1:0,A:849515903;C:721550282;G:717777586;T:840154982;N:29747,100,0,,,849515903,721550282,717777586,840154982,29747,DRX029542,DRS049941,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92724,,0.07971,,0.74657,,0.47796,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Blastula,Embryo,Whole Organism,All anatomical structures
89,DRR032735,DRX029541,DRS049940,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr zfs:0000015 1,SAMD00028132,,sample name:Dr zfs:0000015 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:zfs:0000015|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028132,DRX029541,Dr zfs:0000015 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028132,,,,4310219700.0,43102197.0,DRR032735,0:100 1:0,A:1169701983;C:993241399;G:986263558;T:1160969083;N:43677,100,0,,,1169701983,993241399,986263558,1160969083,43677,DRX029541,DRS049940,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92609,,0.07773,,0.74349,,0.47849,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Blastula,Embryo,Whole Organism,All anatomical structures
90,DRR032734,DRX029540,DRS049939,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 107 individuals,Dr 2cell 2,SAMD00028131,,sample name:Dr 2cell 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:2cell|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028131,DRX029540,Dr 2cell 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028131,,,,3687517000.0,36875170.0,DRR032734,0:100 1:0,A:975272080;C:873518282;G:869743434;T:968941851;N:41353,100,0,,,975272080,873518282,869743434,968941851,41353,DRX029540,DRS049939,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.93204,,0.02088,,0.81639,,0.47553,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Cleavage,Embryo,Whole Organism,All anatomical structures
91,DRR032733,DRX029539,DRS049938,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 108 individuals,Dr 2cell 1,SAMD00028130,,sample name:Dr 2cell 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:2cell|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028130,DRX029539,Dr 2cell 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028130,,,,4156651100.0,41566511.0,DRR032733,0:100 1:0,A:1099943617;C:985498415;G:978884426;T:1092278665;N:45977,100,0,,,1099943617,985498415,978884426,1092278665,45977,DRX029539,DRS049938,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.93452,,0.02198,,0.81197,,0.47342,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Cleavage,Embryo,Whole Organism,All anatomical structures
92,DRR032732,DRX029538,DRS049937,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 80 individuals,Dr 14somite 3,SAMD00028129,,sample name:Dr 14somite 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:14somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028129,DRX029538,Dr 14somite 3,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028129,,,,3734610500.0,37346105.0,DRR032732,0:100 1:0,A:1009418541;C:863710067;G:858061383;T:1003378800;N:41709,100,0,,,1009418541,863710067,858061383,1003378800,41709,DRX029538,DRS049937,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92401,,0.08815,,0.70816,,0.46602,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
93,DRR032731,DRX029537,DRS049936,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 80 individuals,Dr 14somite 2,SAMD00028128,,sample name:Dr 14somite 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:14somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028128,DRX029537,Dr 14somite 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028128,,,,3715174200.0,37151742.0,DRR032731,0:100 1:0,A:1000703508;C:862290629;G:858173468;T:993968396;N:38199,100,0,,,1000703508,862290629,858173468,993968396,38199,DRX029537,DRS049936,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92491,,0.0819,,0.71068,,0.46957,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
94,DRR032730,DRX029536,DRS049935,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 80 individuals,Dr 14somite 1,SAMD00028127,,sample name:Dr 14somite 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:14somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028127,DRX029536,Dr 14somite 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028127,,,,3744386000.0,37443860.0,DRR032730,0:100 1:0,A:1014537326;C:864070910;G:859190201;T:1006549502;N:38061,100,0,,,1014537326,864070910,859190201,1006549502,38061,DRX029536,DRS049935,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92378,,0.08957,,0.7068,,0.47493,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
7946,ERR015563,ERX005934,ERS012707,ERP000263,PRJEB2208,Zebrafish gene three prime end pull down for genome annotation,E-MTAB-308,Transcriptome Analysis,,,,,E MTAB 308:Zebrafish embryo 2 dpf 2,SAMEA898403,Wellcome Sanger Institute,Age:2 days|Alias:E MTAB 308:Zebrafish embryo 2 dpf 2|Broker name:ArrayExpress|Description:Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at  70 C Total RNA was extracted using Trizol Reagent Invitrogen following the manufacturer's instructions. Pellets were resuspended RNase free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND 1000 Spectrophotometer Axon Instruments.|DevelopmentalStage:embryo|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2010 08 19T15:57:35Z|INSDC last update:2018 03 08T15:25:04Z|INSDC status:public|InitialTimePoint:fertilization|OrganismPart:whole organism|SRA accession:ERS012707|Sample Name:ERS012707|Sex:unknown sex|StrainOrLine:Tuebingen|Title:Danio rerio,,,,,,,,,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene 3 prime end pull down for genome annotation,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 2 dpf three prime pull down paired end 250 to 300 bp insert,Zebrafish embro 2 dpf mRNA three prime end,Zebrafish gene three prime end pull down for genome annotation,20 ug of total RNA was fragmented using RNA Fragmentation Reagent Ambion for 5 minutes at 70 C and ethanol precipitated with glycogen and LiCl.   RNA was annealed to the oligo stBPM1polyT22 biotin GGCCAGTCCTGGAGTTTTTTTTTTTTTTTTTTTTTTVN and bound to streptavidin  magnetic beads.   post washing by pull down on a magnet  the bound RNA was reverse transcribed with SuperScript II Invitrogen and a second strand synthesised with DNA polymerase I Promega and RNase H NEB.   post further washing  the double strand cDNA was released from the beads with BpmI NEB.   The cDNA was recovered with the QIAgen PCR Purification Kit and made into a standard Illumina library following the manufacturer's protocol with a fragment size of 250 to 300 bp.,Experimental Factor: AGE:2 d|Experimental Factor: DEVELOPMENTAL STAGE:embryo|Experimental Factor: ORGANISM PART:whole organism|Experimental Factor: SEX:unknown sex,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP000263,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene three prime end pull down for genome annotation,ENA FIRST PUBLIC:2010 08 19|ENA LAST UPDATE:2018 11 16,3444_2.srf,srf,990308120.0,6515185.0,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 2 dpf three prime pull down paired end 250 to 300 bp insert,0:76 1:76,A:279665076;C:200433201;G:189692111;T:304366697;N:16151035,76,76,,,279665076,200433201,189692111,304366697,16151035,ERX005934,ERS012707,ERA010603,SC|Wellcome Trust Sanger Institute,SC|Wellcome Trust Sanger Institute,2,0.93964,0.94008,0.40095,0.39969,0.74424,0.74915,0.49535,0.49761,76,76,B,B,biological fallback assumption,illumina,early_illumina,3prime,other,unknown,bulk,unknown,unknown,,United Kingdom,2010-08-19,Hatching,Embryo,Whole Organism,All anatomical structures
7947,ERR015564,ERX005933,ERS012706,ERP000263,PRJEB2208,Zebrafish gene three prime end pull down for genome annotation,E-MTAB-308,Transcriptome Analysis,,,,,E MTAB 308:Zebrafish embryo 3 dpf 2,SAMEA898404,Wellcome Sanger Institute,Age:3 days|Alias:E MTAB 308:Zebrafish embryo 3 dpf 2|Broker name:ArrayExpress|Description:Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at  70 C Total RNA was extracted using Trizol Reagent Invitrogen following the manufacturer's instructions. Pellets were resuspended RNase free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND 1000 Spectrophotometer Axon Instruments.|DevelopmentalStage:embryo|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2010 08 19T15:57:35Z|INSDC last update:2018 03 08T15:25:04Z|INSDC status:public|InitialTimePoint:fertilization|OrganismPart:whole organism|SRA accession:ERS012706|Sample Name:ERS012706|Sex:unknown sex|StrainOrLine:Tuebingen|Title:Danio rerio,,,,,,,,,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene 3 prime end pull down for genome annotation,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 3 dpf three prime pull down paired end 250 to 300 bp insert,Zebrafish embro 3 dpf mRNA three prime end,Zebrafish gene three prime end pull down for genome annotation,20 ug of total RNA was fragmented using RNA Fragmentation Reagent Ambion for 5 minutes at 70 C and ethanol precipitated with glycogen and LiCl.   RNA was annealed to the oligo stBPM1polyT22 biotin GGCCAGTCCTGGAGTTTTTTTTTTTTTTTTTTTTTTVN and bound to streptavidin  magnetic beads.   post washing by pull down on a magnet  the bound RNA was reverse transcribed with SuperScript II Invitrogen and a second strand synthesised with DNA polymerase I Promega and RNase H NEB.   post further washing  the double strand cDNA was released from the beads with BpmI NEB.   The cDNA was recovered with the QIAgen PCR Purification Kit and made into a standard Illumina library following the manufacturer's protocol with a fragment size of 250 to 300 bp.,Experimental Factor: AGE:3 d|Experimental Factor: DEVELOPMENTAL STAGE:embryo|Experimental Factor: ORGANISM PART:whole organism|Experimental Factor: SEX:unknown sex,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP000263,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene three prime end pull down for genome annotation,ENA FIRST PUBLIC:2010 08 19|ENA LAST UPDATE:2018 11 16,3444_3.srf,srf,1572215648.0,10343524.0,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 3 dpf three prime pull down paired end 250 to 300 bp insert,0:76 1:76,A:395189954;C:374281517;G:356666372;T:420372888;N:25704917,76,76,,,395189954,374281517,356666372,420372888,25704917,ERX005933,ERS012706,ERA010603,SC|Wellcome Trust Sanger Institute,SC|Wellcome Trust Sanger Institute,2,0.96337,0.96626,0.12558,0.12974,0.7824,0.79086,0.40731,0.41802,76,76,B,B,biological fallback assumption,illumina,early_illumina,3prime,other,unknown,bulk,unknown,unknown,,United Kingdom,2010-08-19,Larval,Larval,Whole Organism,All anatomical structures
7948,ERR015562,ERX005932,ERS012705,ERP000263,PRJEB2208,Zebrafish gene three prime end pull down for genome annotation,E-MTAB-308,Transcriptome Analysis,,,,,E MTAB 308:Zebrafish embryo 1 dpf 2,SAMEA898401,Wellcome Sanger Institute,Age:1 days|Alias:E MTAB 308:Zebrafish embryo 1 dpf 2|Broker name:ArrayExpress|Description:Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at  70 C Total RNA was extracted using Trizol Reagent Invitrogen following the manufacturer's instructions. Pellets were resuspended RNase free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND 1000 Spectrophotometer Axon Instruments.|DevelopmentalStage:embryo|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2010 08 19T15:57:35Z|INSDC last update:2018 03 08T15:25:04Z|INSDC status:public|InitialTimePoint:fertilization|OrganismPart:whole organism|SRA accession:ERS012705|Sample Name:ERS012705|Sex:unknown sex|StrainOrLine:Tuebingen|Title:Danio rerio,,,,,,,,,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene 3 prime end pull down for genome annotation,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 1 dpf three prime pull down paired end 250 to 300 bp insert,Zebrafish embro 1 dpf mRNA three prime end,Zebrafish gene three prime end pull down for genome annotation,20 ug of total RNA was fragmented using RNA Fragmentation Reagent Ambion for 5 minutes at 70 C and ethanol precipitated with glycogen and LiCl.   RNA was annealed to the oligo stBPM1polyT22 biotin GGCCAGTCCTGGAGTTTTTTTTTTTTTTTTTTTTTTVN and bound to streptavidin  magnetic beads.   post washing by pull down on a magnet  the bound RNA was reverse transcribed with SuperScript II Invitrogen and a second strand synthesised with DNA polymerase I Promega and RNase H NEB.   post further washing  the double strand cDNA was released from the beads with BpmI NEB.   The cDNA was recovered with the QIAgen PCR Purification Kit and made into a standard Illumina library following the manufacturer's protocol with a fragment size of 250 to 300 bp.,Experimental Factor: AGE:1 d|Experimental Factor: DEVELOPMENTAL STAGE:embryo|Experimental Factor: ORGANISM PART:whole organism|Experimental Factor: SEX:unknown sex,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP000263,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene three prime end pull down for genome annotation,ENA FIRST PUBLIC:2010 08 19|ENA LAST UPDATE:2018 11 16,3444_1.srf,srf,1358041568.0,8934484.0,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 1 dpf three prime pull down paired end 250 to 300 bp insert,0:76 1:76,A:376045982;C:281568469;G:271365867;T:407279179;N:21782071,76,76,,,376045982,281568469,271365867,407279179,21782071,ERX005932,ERS012705,ERA010603,SC|Wellcome Trust Sanger Institute,SC|Wellcome Trust Sanger Institute,2,0.94607,0.94542,0.3002,0.30139,0.73584,0.74038,0.51058,0.51233,76,76,B,B,biological fallback assumption,illumina,early_illumina,3prime,other,unknown,bulk,unknown,unknown,,United Kingdom,2010-08-19,Pharyngula,Embryo,Whole Organism,All anatomical structures
7951,ERR015565,ERX005929,ERS012704,ERP000263,PRJEB2208,Zebrafish gene three prime end pull down for genome annotation,E-MTAB-308,Transcriptome Analysis,,,,,E MTAB 308:Zebrafish embryo 5 dpf 2,SAMEA980815,SC,Age:5 days|Alias:E MTAB 308:Zebrafish embryo 5 dpf 2|Broker name:ArrayExpress|Description:Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at  70 C Total RNA was extracted using Trizol Reagent Invitrogen following the manufacturer's instructions. Pellets were resuspended RNase free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND 1000 Spectrophotometer Axon Instruments.|DevelopmentalStage:embryo|INSDC center name:SC|INSDC first public:2010 08 19T15:57:35Z|INSDC last update:2018 03 08T15:25:04Z|INSDC status:public|InitialTimePoint:fertilization|OrganismPart:whole organism|SRA accession:ERS012704|Sample Name:ERS012704|Sex:unknown sex|StrainOrLine:Tuebingen|Title:Danio rerio,,,,,,,,,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene 3 prime end pull down for genome annotation,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 5 dpf three prime pull down paired end 250 to 300 bp insert,Zebrafish embro 5 dpf mRNA three prime end,Zebrafish gene three prime end pull down for genome annotation,20 ug of total RNA was fragmented using RNA Fragmentation Reagent Ambion for 5 minutes at 70 C and ethanol precipitated with glycogen and LiCl.   RNA was annealed to the oligo stBPM1polyT22 biotin GGCCAGTCCTGGAGTTTTTTTTTTTTTTTTTTTTTTVN and bound to streptavidin  magnetic beads.   post washing by pull down on a magnet  the bound RNA was reverse transcribed with SuperScript II Invitrogen and a second strand synthesised with DNA polymerase I Promega and RNase H NEB.   post further washing  the double strand cDNA was released from the beads with BpmI NEB.   The cDNA was recovered with the QIAgen PCR Purification Kit and made into a standard Illumina library following the manufacturer's protocol with a fragment size of 250 to 300 bp.,Experimental Factor: AGE:5 d|Experimental Factor: DEVELOPMENTAL STAGE:embryo|Experimental Factor: ORGANISM PART:whole organism|Experimental Factor: SEX:unknown sex,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP000263,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene three prime end pull down for genome annotation,ENA FIRST PUBLIC:2010 08 19|ENA LAST UPDATE:2018 11 16,3444_5.srf,srf,1399629832.0,9208091.0,E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 5 dpf three prime pull down paired end 250 to 300 bp insert,0:76 1:76,A:389123080;C:293319124;G:279736391;T:414876632;N:22574605,76,76,,,389123080,293319124,279736391,414876632,22574605,ERX005929,ERS012704,ERA010603,SC|Wellcome Trust Sanger Institute,SC|Wellcome Trust Sanger Institute,2,0.92999,0.9332,0.45309,0.46162,0.72419,0.73919,0.49892,0.50512,76,76,B,B,biological fallback assumption,illumina,early_illumina,3prime,other,unknown,bulk,unknown,unknown,,United Kingdom,2010-08-19,Larval,Larval,Whole Organism,All anatomical structures
7952,ERR015568,ERX005928,ERS000087,ERP000263,PRJEB2208,Zebrafish gene three prime end pull down for genome annotation,E-MTAB-308,Transcriptome Analysis,,,,,ZF male sample1,SAMEA708829,Wellcome Sanger Institute,Alias:ZF male sample1|Description:RNA extracted from whole male adult zebrafish without xxx|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2010 02 26T10:44:13Z|INSDC last update:2018 03 08T15:24:37Z|INSDC status:public|SRA accession:ERS000087|Sample Name:ERS000087|Sex:male|Strain:Tuebingen|Title:Danio rerio,,,,,,,,,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene 3 prime end pull down for genome annotation,E MTAB 308:Illumina Genome Analyzer II sequencing of adult Zebrafish male body dpf three prime pull down paired end 250 to 300 bp insert,Zebrafish adult male body mRNA three prime end,Zebrafish gene three prime end pull down for genome annotation,20 ug of total RNA was fragmented using RNA Fragmentation Reagent Ambion for 5 minutes at 70 C and ethanol precipitated with glycogen and LiCl.   RNA was annealed to the oligo stBPM1polyT22 biotin GGCCAGTCCTGGAGTTTTTTTTTTTTTTTTTTTTTTVN and bound to streptavidin  magnetic beads.   post washing by pull down on a magnet  the bound RNA was reverse transcribed with SuperScript II Invitrogen and a second strand synthesised with DNA polymerase I Promega and RNase H NEB.   post further washing  the double strand cDNA was released from the beads with BpmI NEB.   The cDNA was recovered with the QIAgen PCR Purification Kit and made into a standard Illumina library following the manufacturer's protocol with a fragment size of 250 to 300 bp.,Experimental Factor: DEVELOPMENTAL STAGE:adult|Experimental Factor: ORGANISM PART:whole fish without xxx|Experimental Factor: SEX:male,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP000263,Illumina Genome Analyzer II paired end sequencing; Zebrafish gene three prime end pull down for genome annotation,ENA FIRST PUBLIC:2010 08 19|ENA LAST UPDATE:2018 11 16,3444_8.srf,srf,1012667320.0,6662285.0,E MTAB 308:Illumina Genome Analyzer II sequencing of adult Zebrafish male body dpf three prime pull down paired end 250 to 300 bp insert,0:76 1:76,A:262408681;C:234183204;G:228254982;T:271015871;N:16804582,76,76,,,262408681,234183204,228254982,271015871,16804582,ERX005928,ERS000087,ERA010603,SC|Wellcome Trust Sanger Institute,SC|Wellcome Trust Sanger Institute,2,0.95123,0.96116,0.23163,0.22276,0.77847,0.78648,0.42301,0.43528,76,76,B,B,biological fallback assumption,illumina,early_illumina,3prime,other,unknown,bulk,unknown,unknown,,United Kingdom,2010-02-26,Adult,Adult,Whole Organism,All anatomical structures
52870,SRR9325684,SRX6092609,SRS4993655,SRP201813,PRJNA549547,Transcriptome analysis of innate immune response activated by Vibrio parahaemolyticus,PRJNA549547,Other,In this study  we analyzed the transcriptome data between control and infection groups. GO terms and KEGG pathways were found which related to innate immune response activated by Vibrio parahaemolyticus.,,,,control 2,C2,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate2|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,control,C2,C2,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP201813,,,C5R1 C5R2,fastq fastq,7612414642.0,25206671.0,C5R1.gz,0:151 1:151,A:1998275456;C:1804223564;G:1889177721;T:1919304283;N:1433618,151,151,,,1998275456,1804223564,1889177721,1919304283,1433618,SRX6092609,SRS4993655,SRA900855,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.94324,0.94566,0.05207,0.05226,0.7064,0.71476,0.4395,0.46981,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-19,Larval,Larval,Whole Organism,All anatomical structures
52871,SRR9325685,SRX6092608,SRS4993654,SRP201813,PRJNA549547,Transcriptome analysis of innate immune response activated by Vibrio parahaemolyticus,PRJNA549547,Other,In this study  we analyzed the transcriptome data between control and infection groups. GO terms and KEGG pathways were found which related to innate immune response activated by Vibrio parahaemolyticus.,,,,control 1,C1,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate1|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,control,C1,C1,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP201813,,,C4R1 C4R2,fastq fastq,6295697964.0,20846682.0,C4R1.gz,0:151 1:151,A:1647036246;C:1503776742;G:1574879558;T:1568823261;N:1182157,151,151,,,1647036246,1503776742,1574879558,1568823261,1182157,SRX6092608,SRS4993654,SRA900855,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.9445,0.94654,0.04771,0.04787,0.70017,0.71023,0.4562,0.46962,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-19,Larval,Larval,Whole Organism,All anatomical structures
52872,SRR9325686,SRX6092607,SRS4993653,SRP201813,PRJNA549547,Transcriptome analysis of innate immune response activated by Vibrio parahaemolyticus,PRJNA549547,Other,In this study  we analyzed the transcriptome data between control and infection groups. GO terms and KEGG pathways were found which related to innate immune response activated by Vibrio parahaemolyticus.,,,,infection 1,I1,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate1|treatment:infection|BioSampleModel:Model organism or animal,,,,,,,,,infection,I1,I1,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP201813,,,I4R1 I4R2,fastq fastq,5593088924.0,18520162.0,I4R1.gz,0:151 1:151,A:1483645360;C:1316989046;G:1368211525;T:1423148010;N:1094983,151,151,,,1483645360,1316989046,1368211525,1423148010,1094983,SRX6092607,SRS4993653,SRA900855,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.94041,0.9415,0.05919,0.05967,0.69083,0.70088,0.46898,0.48002,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-19,Larval,Larval,Whole Organism,All anatomical structures
52873,SRR9325687,SRX6092606,SRS4993652,SRP201813,PRJNA549547,Transcriptome analysis of innate immune response activated by Vibrio parahaemolyticus,PRJNA549547,Other,In this study  we analyzed the transcriptome data between control and infection groups. GO terms and KEGG pathways were found which related to innate immune response activated by Vibrio parahaemolyticus.,,,,control 3,C3,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate3|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,control,C3,C3,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP201813,,,C6R1 C6R2,fastq fastq,6268873418.0,20757859.0,C6R1.gz,0:151 1:151,A:1661497500;C:1472659955;G:1548227326;T:1585302735;N:1185902,151,151,,,1661497500,1472659955,1548227326,1585302735,1185902,SRX6092606,SRS4993652,SRA900855,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.94166,0.94403,0.05926,0.05945,0.70074,0.71332,0.47103,0.47639,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-19,Larval,Larval,Whole Organism,All anatomical structures
52874,SRR9325688,SRX6092605,SRS4993651,SRP201813,PRJNA549547,Transcriptome analysis of innate immune response activated by Vibrio parahaemolyticus,PRJNA549547,Other,In this study  we analyzed the transcriptome data between control and infection groups. GO terms and KEGG pathways were found which related to innate immune response activated by Vibrio parahaemolyticus.,,,,infection 3,I3,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate3|treatment:infection|BioSampleModel:Model organism or animal,,,,,,,,,infection,I3,I3,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP201813,,,I6R1 I6R2,fastq fastq,5131234586.0,16990843.0,I6R1.gz,0:151 1:151,A:1358543385;C:1210921479;G:1270192482;T:1290573589;N:1003651,151,151,,,1358543385,1210921479,1270192482,1290573589,1003651,SRX6092605,SRS4993651,SRA900855,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.94644,0.94835,0.04436,0.04422,0.71845,0.72835,0.46647,0.46929,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-19,Larval,Larval,Whole Organism,All anatomical structures
52875,SRR9325689,SRX6092604,SRS4993650,SRP201813,PRJNA549547,Transcriptome analysis of innate immune response activated by Vibrio parahaemolyticus,PRJNA549547,Other,In this study  we analyzed the transcriptome data between control and infection groups. GO terms and KEGG pathways were found which related to innate immune response activated by Vibrio parahaemolyticus.,,,,infection 2,I2,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate2|treatment:infection|BioSampleModel:Model organism or animal,,,,,,,,,infection,I2,I2,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP201813,,,I5R1 I5R2,fastq fastq,6752493500.0,22359250.0,I5R1.gz,0:151 1:151,A:1779816156;C:1595083778;G:1667677153;T:1708582786;N:1333627,151,151,,,1779816156,1595083778,1667677153,1708582786,1333627,SRX6092604,SRS4993650,SRA900855,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.94352,0.947,0.05492,0.05567,0.70019,0.70881,0.47963,0.47637,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-19,Larval,Larval,Whole Organism,All anatomical structures
52888,SRR9333941,SRX6100410,SRS5000910,SRP202062,PRJNA550012,Transcriptome analysis of innate immune response in notch1a mutant and wide type zebrafish activated by microinjection Vibrio parahaemolyticus,PRJNA550012,Other,we generated notch1a mutant zebrafish line  and then we infected notch1a mutant and wide type zebrafish by microinjection. The role of notch1a in innnate immune response was analyzed.,,,,control 1,WTPBS1,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate1|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,control,WTPBS1,WTPBS1,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP202062,,,WT PBS 1 R1 WT PBS 1 R2,fastq fastq,8866677000.0,29555590.0,WT PBS 1 R1.gz,0:150 1:150,A:2183986294;C:2242368970;G:2246335396;T:2193811531;N:174809,150,150,,,2183986294,2242368970,2246335396,2193811531,174809,SRX6100410,SRS5000910,SRA901699,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.94766,0.9446,0.01552,0.01523,0.78013,0.78914,0.4609,0.4456,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-21,Larval,Larval,Whole Organism,All anatomical structures
52889,SRR9333942,SRX6100409,SRS5000909,SRP202062,PRJNA550012,Transcriptome analysis of innate immune response in notch1a mutant and wide type zebrafish activated by microinjection Vibrio parahaemolyticus,PRJNA550012,Other,we generated notch1a mutant zebrafish line  and then we infected notch1a mutant and wide type zebrafish by microinjection. The role of notch1a in innnate immune response was analyzed.,,,,control 2,WTPBS2,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate2|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,control,WTPBS2,WTPBS2,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP202062,,,WT PBS 2 R1 WT PBS 2 R2,fastq fastq,10082208300.0,33607361.0,WT PBS 2 R1.gz,0:150 1:150,A:2477937957;C:2557169626;G:2554846201;T:2492055059;N:199457,150,150,,,2477937957,2557169626,2554846201,2492055059,199457,SRX6100409,SRS5000909,SRA901699,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.95393,0.95031,0.01683,0.01604,0.77624,0.78386,0.46508,0.45604,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-21,Larval,Larval,Whole Organism,All anatomical structures
52890,SRR9333943,SRX6100408,SRS5000905,SRP202062,PRJNA550012,Transcriptome analysis of innate immune response in notch1a mutant and wide type zebrafish activated by microinjection Vibrio parahaemolyticus,PRJNA550012,Other,we generated notch1a mutant zebrafish line  and then we infected notch1a mutant and wide type zebrafish by microinjection. The role of notch1a in innnate immune response was analyzed.,,,,control 3,WTPBS3,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate3|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,control,WTPBS3,WTPBS3,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP202062,,,WT PBS 3 R2 WT PBS 3 R1,fastq fastq,7842530700.0,26141769.0,WT PBS 3 R1.gz,0:150 1:150,A:1912472880;C:2005415056;G:1999159107;T:1925331911;N:151746,150,150,,,1912472880,2005415056,1999159107,1925331911,151746,SRX6100408,SRS5000905,SRA901699,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.95536,0.9545,0.01399,0.01388,0.78228,0.79285,0.4524,0.45849,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-21,Larval,Larval,Whole Organism,All anatomical structures
52891,SRR9333944,SRX6100407,SRS5000907,SRP202062,PRJNA550012,Transcriptome analysis of innate immune response in notch1a mutant and wide type zebrafish activated by microinjection Vibrio parahaemolyticus,PRJNA550012,Other,we generated notch1a mutant zebrafish line  and then we infected notch1a mutant and wide type zebrafish by microinjection. The role of notch1a in innnate immune response was analyzed.,,,,infection 1,WTVp1,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate1|treatment:infection|BioSampleModel:Model organism or animal,,,,,,,,,infection,WTVp1,WTVp1,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP202062,,,WT VP 1 R2 WT VP 1 R1,fastq fastq,7675960200.0,25586534.0,WT VP 1 R1.gz,0:150 1:150,A:1889233691;C:1944561523;G:1939597307;T:1902416855;N:150824,150,150,,,1889233691,1944561523,1939597307,1902416855,150824,SRX6100407,SRS5000907,SRA901699,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.9543,0.95081,0.01719,0.01715,0.77417,0.78307,0.46427,0.45935,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-21,Larval,Larval,Whole Organism,All anatomical structures
52892,SRR9333945,SRX6100406,SRS5000906,SRP202062,PRJNA550012,Transcriptome analysis of innate immune response in notch1a mutant and wide type zebrafish activated by microinjection Vibrio parahaemolyticus,PRJNA550012,Other,we generated notch1a mutant zebrafish line  and then we infected notch1a mutant and wide type zebrafish by microinjection. The role of notch1a in innnate immune response was analyzed.,,,,infection 2,WTVp2,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate2|treatment:infection|BioSampleModel:Model organism or animal,,,,,,,,,infection,WTVp2,WTVp2,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP202062,,,WT VP 2 R1 WT VP 2 R2,fastq fastq,9591245700.0,31970819.0,WT VP 2 R1.gz,0:150 1:150,A:2359635948;C:2430096225;G:2426833110;T:2374492666;N:187751,150,150,,,2359635948,2430096225,2426833110,2374492666,187751,SRX6100406,SRS5000906,SRA901699,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.95526,0.95076,0.01638,0.01625,0.77589,0.78595,0.45512,0.45781,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-21,Larval,Larval,Whole Organism,All anatomical structures
52893,SRR9333946,SRX6100405,SRS5000908,SRP202062,PRJNA550012,Transcriptome analysis of innate immune response in notch1a mutant and wide type zebrafish activated by microinjection Vibrio parahaemolyticus,PRJNA550012,Other,we generated notch1a mutant zebrafish line  and then we infected notch1a mutant and wide type zebrafish by microinjection. The role of notch1a in innnate immune response was analyzed.,,,,infection 3,WTVp3,,strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate3|treatment:infection|BioSampleModel:Model organism or animal,,,,,,,,,infection,WTVp3,WTVp3,3dpf whole larvae control,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP202062,,,WT VP 3 R1 WT VP 3 R2,fastq fastq,8828767500.0,29429225.0,WT VP 3 R1.gz,0:150 1:150,A:2169141529;C:2239438424;G:2237766047;T:2182246217;N:175283,150,150,,,2169141529,2239438424,2237766047,2182246217,175283,SRX6100405,SRS5000908,SRA901699,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,2,0.95661,0.95303,0.01647,0.01662,0.77305,0.78159,0.46349,0.46225,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-06-21,Larval,Larval,Whole Organism,All anatomical structures
55268,SRR10215484,SRX6935171,SRS5465204,SRP223930,PRJNA575342,CAGE /CappedRNA sequencig,PRJNA575342,Other,CAGE and full length capped RNA sequencing for identification of transcription start TSS utilisation during Zebrafish Danio rerio embryonic development,,,,,S06 Prim5,,strain:AB|dev stage:Prim 5|sex:N/A|tissue:whole embryo|BioSampleModel:Model organism or animal,,,,,,,,,TeloPrime RNA seq Danio rerio  whole embryo  Prim 5  stage,Prim5 TeloPrime,Prim5 TeloPrime,TeloPrime Full Length cDNA amplification,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP223930,,,S06_Prim5_TeloPrime_1.fastq.gz S06_Prim5_TeloPrime_2.fastq.gz,fastq fastq,24558505000.0,122792525.0,S06 Prim5 TeloPrime 1.fastq.gz,0:100 1:100,A:6341287207;C:5749049203;G:5758305711;T:6709011836;N:851043,100,100,,,6341287207,5749049203,5758305711,6709011836,851043,SRX6935171,SRS5465204,SRA971223,University of Birmingham|Cancer and Genomic Sciences,University of Birmingham,2,0.85518,0.83013,0.01363,0.01378,0.80773,0.80992,0.38509,0.39167,100,100,B,B,biological fallback assumption,illumina,hiseq_era,full_length,other,unknown,bulk,unknown,unknown,,United Kingdom,2019-10-02,Pharyngula,Embryo,Whole Organism,All anatomical structures
55463,SRR10423788,SRX7119878,SRS5629995,SRP229377,PRJNA588504,Transcriptomic characterization of zebrafish larvae in response to lindane exposure.,PRJNA588504,Other,Lindane is a highly toxic organochlorine pesticide and widespread in aquatic environment that can cause deleterious effects on fish. Although some lindane regulated genes have been investigated in fish  the transcriptional responses of fish larvae to acute lindane exposure are not well understood. In this study  RNA sequencing was used to examine the transcriptional changes in developing zebrafish larvae under a low concentration of lindane exposure from 96 to 120hpf. Our resultes provide useful insights to help further understand the transcriptional response of zebrafish larvae under acute exposure to lindane.,,,,,ZC120h,,breed:not collected|dev stage:120h|sex:pooled male and female|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish larvae at 96h exposed to normal water for xxx h,ZC120h,ZC120h,zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP229377,,,ZC120h_R2.fq.gz ZC120h_R1.fq.gz,fastq fastq,12785060978.0,42334639.0,ZC120h R1.fq.gz,0:151 1:151,A:3341524237;C:3029668010;G:3132163675;T:3281584092;N:120964,151,151,,,3341524237,3029668010,3132163675,3281584092,120964,SRX7119878,SRS5629995,SRA993647,Wuhan University|Department of Genetics,Wuhan University,2,0.95082,0.95755,0.05726,0.05624,0.6817,0.68718,0.47419,0.47596,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-09,Larval,Larval,Whole Organism,All anatomical structures
55464,SRR10423789,SRX7119877,SRS5629994,SRP229377,PRJNA588504,Transcriptomic characterization of zebrafish larvae in response to lindane exposure.,PRJNA588504,Other,Lindane is a highly toxic organochlorine pesticide and widespread in aquatic environment that can cause deleterious effects on fish. Although some lindane regulated genes have been investigated in fish  the transcriptional responses of fish larvae to acute lindane exposure are not well understood. In this study  RNA sequencing was used to examine the transcriptional changes in developing zebrafish larvae under a low concentration of lindane exposure from 96 to 120hpf. Our resultes provide useful insights to help further understand the transcriptional response of zebrafish larvae under acute exposure to lindane.,,,,,Lin120h,,breed:not collected|dev stage:120h|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish larvae at 96h exposed to Lindane for xxx h,Lin120h,Lin120h,zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP229377,,,Lin120h_R2.fq.gz Lin120h_R1.fq.gz,fastq fastq,14029985008.0,46456904.0,Lin120h R1.fq.gz,0:151 1:151,A:3703851299;C:3286864966;G:3398465264;T:3640669046;N:134433,151,151,,,3703851299,3286864966,3398465264,3640669046,134433,SRX7119877,SRS5629994,SRA993647,Wuhan University|Department of Genetics,Wuhan University,2,0.94543,0.95153,0.07203,0.07111,0.67411,0.6799,0.46566,0.4813,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-09,Larval,Larval,Whole Organism,All anatomical structures
59169,SRR11730551,SRX8289703,SRS6611331,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,100 1,,breed:AB strain10|age:7pdf 10|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish10,L 10,L 10,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,100_1.raw_2.fastq.gz 100_1.raw_1.fastq.gz,fastq fastq,8089178700.0,26963929.0,100 1.raw 1.fastq.gz,0:150 1:150,A:2177945625;C:1841818410;G:1980677132;T:2088574435;N:163098,150,150,,,2177945625,1841818410,1980677132,2088574435,163098,SRX8289703,SRS6611331,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.94015,0.93974,0.09604,0.09581,0.65746,0.65853,0.48508,0.48349,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59170,SRR11730552,SRX8289702,SRS6611330,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,50 3,,breed:AB strain9|age:7pdf 9|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish9,L 9,L 9,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,50_3.raw_1.fastq.gz 50_3.raw_2.fastq.gz,fastq fastq,7470624600.0,24902082.0,50 3.raw 1.fastq.gz,0:150 1:150,A:2007517594;C:1686506604;G:1824601005;T:1951849371;N:150026,150,150,,,2007517594,1686506604,1824601005,1951849371,150026,SRX8289702,SRS6611330,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.93949,0.93816,0.10339,0.10268,0.65705,0.65762,0.48799,0.48874,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59171,SRR11730553,SRX8289701,SRS6611329,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,50 2,,breed:AB strain8|age:7pdf 8|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish8,L 8,L 8,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,50_2.raw_1.fastq.gz 50_2.raw_2.fastq.gz,fastq fastq,8861975700.0,29539919.0,50 2.raw 1.fastq.gz,0:150 1:150,A:2360364654;C:2043721631;G:2183203350;T:2274509353;N:176712,150,150,,,2360364654,2043721631,2183203350,2274509353,176712,SRX8289701,SRS6611329,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.94138,0.94043,0.11022,0.1096,0.66162,0.66237,0.49495,0.49469,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59172,SRR11730554,SRX8289700,SRS6611328,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,50 1,,breed:AB strain7|age:7pdf 7|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish7,L 7,L 7,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,50_1.raw_2.fastq.gz 50_1.raw_1.fastq.gz,fastq fastq,8901558600.0,29671862.0,50 1.raw 1.fastq.gz,0:150 1:150,A:2404995161;C:2026663404;G:2167517694;T:2302202957;N:179384,150,150,,,2404995161,2026663404,2167517694,2302202957,179384,SRX8289700,SRS6611328,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.93838,0.93806,0.09737,0.09746,0.65516,0.65628,0.48651,0.48477,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59173,SRR11730555,SRX8289699,SRS6611327,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,10 3,,breed:AB strain6|age:7pdf 6|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish6,L 6,L 6,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,10_3.raw_2.fastq.gz 10_3.raw_1.fastq.gz,fastq fastq,7437472800.0,24791576.0,10 3.raw 1.fastq.gz,0:150 1:150,A:1981462739;C:1710630842;G:1827812172;T:1917416671;N:150376,150,150,,,1981462739,1710630842,1827812172,1917416671,150376,SRX8289699,SRS6611327,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.94181,0.94033,0.10285,0.103,0.65989,0.6617,0.49673,0.49222,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59174,SRR11730556,SRX8289698,SRS6611326,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,10 2,,breed:AB strain5|age:7pdf 5|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish5,L 5,L 5,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,10_2.raw_1.fastq.gz 10_2.raw_2.fastq.gz,fastq fastq,7367983200.0,24559944.0,10 2.raw 1.fastq.gz,0:150 1:150,A:1983409392;C:1677778205;G:1767715591;T:1938931316;N:148696,150,150,,,1983409392,1677778205,1767715591,1938931316,148696,SRX8289698,SRS6611326,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.9376,0.93585,0.10031,0.10016,0.65843,0.65884,0.47044,0.49067,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59175,SRR11730557,SRX8289697,SRS6611325,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,10 1,,breed:AB strain4|age:7pdf 4|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish4,L 4,L 4,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,10_1.raw_2.fastq.gz 10_1.raw_1.fastq.gz,fastq fastq,7805627700.0,26018759.0,10 1.raw 1.fastq.gz,0:150 1:150,A:2108625492;C:1771789070;G:1878589306;T:2046466221;N:157611,150,150,,,2108625492,1771789070,1878589306,2046466221,157611,SRX8289697,SRS6611325,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.93771,0.93697,0.10318,0.10317,0.65821,0.65782,0.48837,0.48785,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59176,SRR11730558,SRX8289696,SRS6611324,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,DMSO 3,,breed:AB strain3|age:7pdf 3|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish3,L 3,L 3,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,DMSO_3.raw_2.fastq.gz DMSO_3.raw_1.fastq.gz,fastq fastq,7040839500.0,23469465.0,DMSO 3.raw 1.fastq.gz,0:150 1:150,A:1899913891;C:1592541018;G:1703285418;T:1844957292;N:141881,150,150,,,1899913891,1592541018,1703285418,1844957292,141881,SRX8289696,SRS6611324,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.93606,0.93543,0.10551,0.10559,0.65466,0.65563,0.48063,0.47789,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59177,SRR11730559,SRX8289695,SRS6611323,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,100 3,,breed:AB strain12|age:7pdf 12|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish12,L 12,L 12,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,100_3.raw_2.fastq.gz 100_3.raw_1.fastq.gz,fastq fastq,8196975600.0,27323252.0,100 3.raw 1.fastq.gz,0:150 1:150,A:2188101969;C:1877854538;G:2005324994;T:2125529773;N:164326,150,150,,,2188101969,1877854538,2005324994,2125529773,164326,SRX8289695,SRS6611323,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.94287,0.94017,0.1017,0.10057,0.66158,0.66358,0.49402,0.49056,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59178,SRR11730560,SRX8289694,SRS6611322,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,100 2,,breed:AB strain11|age:7pdf 11|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish11,L 11,L 11,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,100_2.raw_1.fastq.gz 100_2.raw_2.fastq.gz,fastq fastq,8773266900.0,29244223.0,100 2.raw 1.fastq.gz,0:150 1:150,A:2356477425;C:2010587510;G:2129453088;T:2276570805;N:178072,150,150,,,2356477425,2010587510,2129453088,2276570805,178072,SRX8289694,SRS6611322,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.94317,0.94233,0.09393,0.09393,0.65906,0.66026,0.48735,0.48695,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59179,SRR11730561,SRX8289693,SRS6611321,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,DMSO 2,,breed:AB strain2|age:7pdf 2|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish2,L 2,L 2,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,DMSO_2.raw_2.fastq.gz DMSO_2.raw_1.fastq.gz,fastq fastq,7015860000.0,23386200.0,DMSO 2.raw 1.fastq.gz,0:150 1:150,A:1887684850;C:1594757510;G:1705218972;T:1828056316;N:142352,150,150,,,1887684850,1594757510,1705218972,1828056316,142352,SRX8289693,SRS6611321,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.93989,0.93831,0.10215,0.10153,0.65476,0.65662,0.48064,0.47997,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
59180,SRR11730562,SRX8289692,SRS6611320,SRP260555,PRJNA631119,Effect of BDE 47 on zebrafish,PRJNA631119,Other,Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio,,,,,DMSO 1,,breed:AB strain1|age:7pdf 1|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish1,L 1,L 1,Illumina protocol,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP260555,,,DMSO_1.raw_1.fastq.gz DMSO_1.raw_2.fastq.gz,fastq fastq,7347884700.0,24492949.0,DMSO 1.raw 1.fastq.gz,0:150 1:150,A:1975210413;C:1668581787;G:1791007480;T:1912936523;N:148497,150,150,,,1975210413,1668581787,1791007480,1912936523,148497,SRX8289692,SRS6611320,SRA1073316,Shantou University|Medical Colleg,Shantou University,2,0.93984,0.9385,0.09923,0.09933,0.65411,0.65508,0.47808,0.48684,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-05-08,Larval,Larval,Whole Organism,All anatomical structures
66074,SRR15871410,SRX12162473,SRS10140804,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,sib D7 1,,replicate:biological replicate s7 1|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,sib D7 1,sib D7 1,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,sib_D7_1_1.fq.gz sib_D7_1_2.fq.gz,fastq fastq,6744360000.0,22481200.0,sib D7 1 1.fq.gz,0:150 1:150,A:1747659521;C:1633189382;G:1626351046;T:1737068132;N:91919,150,150,,,1747659521,1633189382,1626351046,1737068132,91919,SRX12162473,SRS10140804,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.96643,0.96697,0.04953,0.04987,0.71226,0.71129,0.46536,0.46559,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66075,SRR15871411,SRX12162472,SRS10140803,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,sib D5 3,,replicate:biological replicate s5 3|isolate:zerafish|age:5 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,sib D5 3,sib D5 3,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,sib_D5_3_1.fq.gz sib_D5_3_2.fq.gz,fastq fastq,6498325500.0,21661085.0,sib D5 3 1.fq.gz,0:150 1:150,A:1694468333;C:1564487898;G:1558790522;T:1680507164;N:71583,150,150,,,1694468333,1564487898,1558790522,1680507164,71583,SRX12162472,SRS10140803,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.96035,0.95944,0.05311,0.05279,0.68566,0.68554,0.46386,0.46183,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66076,SRR15871412,SRX12162471,SRS10140801,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,sib D5 2,,replicate:biological replicate s5 2|isolate:zerafish|age:5 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,sib D5 2,sib D5 2,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,sib_D5_2_1.fq.gz sib_D5_2_2.fq.gz,fastq fastq,6595106400.0,21983688.0,sib D5 2 1.fq.gz,0:150 1:150,A:1704058293;C:1602020249;G:1599065139;T:1689885295;N:77424,150,150,,,1704058293,1602020249,1599065139,1689885295,77424,SRX12162471,SRS10140801,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.97008,0.96914,0.0427,0.04255,0.70974,0.70993,0.47272,0.46789,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66077,SRR15871413,SRX12162470,SRS10140802,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,sib D5 1,,replicate:biological replicate s5 1|isolate:zerafish|age:5 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,sib D5 1,sib D5 1,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,sib_D5_1_1.fq.gz sib_D5_1_2.fq.gz,fastq fastq,6593214000.0,21977380.0,sib D5 1 1.fq.gz,0:150 1:150,A:1721390376;C:1584072112;G:1580857939;T:1706812853;N:80720,150,150,,,1721390376,1584072112,1580857939,1706812853,80720,SRX12162470,SRS10140802,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.96321,0.96389,0.05286,0.05277,0.69376,0.69321,0.46895,0.46899,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66078,SRR15871414,SRX12162469,SRS10140799,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,KO D7 3,,replicate:biological replicate k7 3|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,KO D7 3,KO D7 3,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,KO_D7_3_1.fq.gz KO_D7_3_2.fq.gz,fastq fastq,6697898700.0,22326329.0,KO D7 3 1.fq.gz,0:150 1:150,A:1729830210;C:1626933731;G:1629589816;T:1711462945;N:81998,150,150,,,1729830210,1626933731,1629589816,1711462945,81998,SRX12162469,SRS10140799,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.96581,0.96567,0.04616,0.04604,0.70883,0.70916,0.46079,0.45965,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66079,SRR15871415,SRX12162468,SRS10140800,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,KO D7 2,,replicate:biological replicate k7 2|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,KO D7 2,KO D7 2,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,KO_D7_2_1.fq.gz KO_D7_2_2.fq.gz,fastq fastq,6906283500.0,23020945.0,KO D7 2 1.fq.gz,0:150 1:150,A:1806100396;C:1655792967;G:1653970800;T:1790324829;N:94508,150,150,,,1806100396,1655792967,1653970800,1790324829,94508,SRX12162468,SRS10140800,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.95959,0.95935,0.05687,0.05667,0.69171,0.69059,0.45811,0.45082,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66080,SRR15871416,SRX12162467,SRS10140798,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,KO D7 1,,replicate:biological replicate k7 1|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,KO D7 1,KO D7 1,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,KO_D7_1_1.fq.gz KO_D7_1_2.fq.gz,fastq fastq,6619108500.0,22063695.0,KO D7 1 1.fq.gz,0:150 1:150,A:1757921208;C:1560189478;G:1553114251;T:1747793077;N:90486,150,150,,,1757921208,1560189478,1553114251,1747793077,90486,SRX12162467,SRS10140798,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.95974,0.95932,0.06686,0.06629,0.68805,0.68722,0.45035,0.45997,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66081,SRR15871417,SRX12162466,SRS10140797,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,KO D5 3,,replicate:biological replicate k5 3|isolate:zerafish|age:5 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,KO D5 3,KO D5 3,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,KO_D5_3_1.fq.gz KO_D5_3_2.fq.gz,fastq fastq,6691686000.0,22305620.0,KO D5 3 1.fq.gz,0:150 1:150,A:1746669919;C:1606703034;G:1603246122;T:1734990050;N:76875,150,150,,,1746669919,1606703034,1603246122,1734990050,76875,SRX12162466,SRS10140797,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.96521,0.96527,0.05965,0.05975,0.68773,0.68793,0.46804,0.47,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66082,SRR15871418,SRX12162465,SRS10140794,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,sib D7 3,,replicate:biological replicate s7 3|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,sib D7 3,sib D7 3,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,sib_D7_3_1.fq.gz sib_D7_3_2.fq.gz,fastq fastq,6168850200.0,20562834.0,sib D7 3 1.fq.gz,0:150 1:150,A:1609352613;C:1480336563;G:1473156594;T:1605919645;N:84785,150,150,,,1609352613,1480336563,1473156594,1605919645,84785,SRX12162465,SRS10140794,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.96286,0.96398,0.05395,0.05411,0.70471,0.70301,0.44663,0.44801,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66083,SRR15871419,SRX12162464,SRS10140793,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,sib D7 2,,replicate:biological replicate s7 2|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,sib D7 2,sib D7 2,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,sib_D7_2_1.fq.gz sib_D7_2_2.fq.gz,fastq fastq,6552198600.0,21840662.0,sib D7 2 1.fq.gz,0:150 1:150,A:1695856459;C:1588032494;G:1581580617;T:1686650157;N:78873,150,150,,,1695856459,1588032494,1581580617,1686650157,78873,SRX12162464,SRS10140793,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.9664,0.96617,0.05106,0.05103,0.70694,0.70737,0.46454,0.45464,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66084,SRR15871420,SRX12162463,SRS10140796,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,KO D5 2,,replicate:biological replicate k5 2|isolate:zerafish|age:5 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,KO D5 2,KO D5 2,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,KO_D5_2_1.fq.gz KO_D5_2_2.fq.gz,fastq fastq,6417654300.0,21392181.0,KO D5 2 1.fq.gz,0:150 1:150,A:1681822871;C:1535820144;G:1530474850;T:1669458576;N:77859,150,150,,,1681822871,1535820144,1530474850,1669458576,77859,SRX12162463,SRS10140796,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.9556,0.96286,0.05823,0.05872,0.6886,0.68793,0.45207,0.46254,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
66085,SRR15871421,SRX12162462,SRS10140795,SRP336826,PRJNA762494,Transcriptomes analysis of ercc2/xpd mutant zebrafish,PRJNA762494,Other,to reveal transcriptional changes in ercc2/xpd mutant zerbafish.,,,,,KO D5 1,,replicate:biological replicate k5 1|isolate:zerafish|age:5 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,KO D5 1,KO D5 1,transcriptional alterations,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP336826,,,KO_D5_1_1.fq.gz KO_D5_1_2.fq.gz,fastq fastq,6637238400.0,22124128.0,KO D5 1 1.fq.gz,0:150 1:150,A:1740510709;C:1589102544;G:1583978034;T:1723566526;N:80587,150,150,,,1740510709,1589102544,1583978034,1723566526,80587,SRX12162462,SRS10140795,SRA1293390,Fudan University|School of Life Sciences,Fudan University,2,0.96472,0.96468,0.0531,0.05313,0.69491,0.69499,0.45682,0.46255,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-09-13,Larval,Larval,Whole Organism,All anatomical structures
72115,SRR22252685,SRX18229307,SRS15725468,SRP407132,PRJNA900028,The miR 430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation,PRJNA900028,Other,In anamniote embryos the major wave of zygotic genome activation starts during the mid blastula transition. However  some genes escape global genome repression and are activated substantially earlier and shape the minor wave of genome activation. The mechanisms underlying the minor wave of genome activation are little understood. We explored the genomic organisation and cis regulatory mechanisms of a transcription body  in which the minor wave of genome activation is first detected in zebrafish. We identified the miR 430 cluster with excessive copy number and highest density of Pol II transcribed promoters in the genome  that is required for forming the transcription body. However  this transcription body is not essential for  nor encompasses minor wave transcription globally. Instead  distinct minor wave specific promoter architecture suggests promoter autonomous mechanisms regulate the minor wave of genome activation. These minor wave specific features also suggest distinct transcription initiation mechanisms between the minor and major wave of genome activation.,,,,,miR 430 CRISPRi,,strain:AB|dev stage:512 cell|sex:NA|tissue:whole embryo|treatment:dCas9 inhibition of miR 430 transcription|BioSampleModel:Model organism or animal,,,,,,,,,Nascent EU RNA seq post miR 430 CRISPRi  replicate 2,miR 430 CRISPRi REP2,miR 430 CRISPRi REP2,Click iT Nascent RNA Capture,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP407132,,,miR430kdnRP2_1.fastq.gz miR430kdnRP2_2.fastq.gz,fastq fastq,8157486400.0,40787432.0,miR430kdnRP2 1.fastq.gz,0:100 1:100,A:1637229779;C:2459901946;G:2510010429;T:1550248539;N:95707,100,100,,,1637229779,2459901946,2510010429,1550248539,95707,SRX18229307,SRS15725468,SRA1538278,University of Birmingham|Cancer and Genomic Sciences,University of Birmingham,2,0.93942,0.93442,0.24276,0.22706,0.94462,0.94412,0.93428,0.89231,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United Kingdom,2022-11-10,Blastula,Embryo,Whole Organism,All anatomical structures
72116,SRR22252686,SRX18229306,SRS15725468,SRP407132,PRJNA900028,The miR 430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation,PRJNA900028,Other,In anamniote embryos the major wave of zygotic genome activation starts during the mid blastula transition. However  some genes escape global genome repression and are activated substantially earlier and shape the minor wave of genome activation. The mechanisms underlying the minor wave of genome activation are little understood. We explored the genomic organisation and cis regulatory mechanisms of a transcription body  in which the minor wave of genome activation is first detected in zebrafish. We identified the miR 430 cluster with excessive copy number and highest density of Pol II transcribed promoters in the genome  that is required for forming the transcription body. However  this transcription body is not essential for  nor encompasses minor wave transcription globally. Instead  distinct minor wave specific promoter architecture suggests promoter autonomous mechanisms regulate the minor wave of genome activation. These minor wave specific features also suggest distinct transcription initiation mechanisms between the minor and major wave of genome activation.,,,,,miR 430 CRISPRi,,strain:AB|dev stage:512 cell|sex:NA|tissue:whole embryo|treatment:dCas9 inhibition of miR 430 transcription|BioSampleModel:Model organism or animal,,,,,,,,,Nascent EU RNA seq post miR 430 CRISPRi  replicate 1,miR 430 CRISPRi REP1,miR 430 CRISPRi REP1,Click iT Nascent RNA Capture,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP407132,,,miR430kdnRP1_1.fastq.gz miR430kdnRP1_2.fastq.gz,fastq fastq,11196647800.0,55983239.0,miR430kdnRP1 1.fastq.gz,0:100 1:100,A:2166112242;C:3522354529;G:3555053736;T:1952992426;N:134867,100,100,,,2166112242,3522354529,3555053736,1952992426,134867,SRX18229306,SRS15725468,SRA1538278,University of Birmingham|Cancer and Genomic Sciences,University of Birmingham,2,0.93035,0.93154,0.20369,0.20537,0.95824,0.95708,0.94489,0.95226,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United Kingdom,2022-11-10,Blastula,Embryo,Whole Organism,All anatomical structures
72117,SRR22252689,SRX18229303,SRS15725465,SRP407132,PRJNA900028,The miR 430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation,PRJNA900028,Other,In anamniote embryos the major wave of zygotic genome activation starts during the mid blastula transition. However  some genes escape global genome repression and are activated substantially earlier and shape the minor wave of genome activation. The mechanisms underlying the minor wave of genome activation are little understood. We explored the genomic organisation and cis regulatory mechanisms of a transcription body  in which the minor wave of genome activation is first detected in zebrafish. We identified the miR 430 cluster with excessive copy number and highest density of Pol II transcribed promoters in the genome  that is required for forming the transcription body. However  this transcription body is not essential for  nor encompasses minor wave transcription globally. Instead  distinct minor wave specific promoter architecture suggests promoter autonomous mechanisms regulate the minor wave of genome activation. These minor wave specific features also suggest distinct transcription initiation mechanisms between the minor and major wave of genome activation.,,,,,gol CRISPRi CON,,strain:AB|dev stage:512 cell|sex:NA|tissue:whole embryo|treatment:dCas9 inhibition of gol transcription control|BioSampleModel:Model organism or animal,,,,,,,,,Nascent EU RNA seq post gol CRISPRi control  replicate 2,gol CRISPRi CON REP2,gol CRISPRi CON REP2,Click iT Nascent RNA Capture,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP407132,,,GolConRP2_1.fastq.gz GolConRP2_2.fastq.gz,fastq fastq,8163531400.0,40817657.0,GolConRP2 1.fastq.gz,0:100 1:100,A:1615736111;C:2488501654;G:2531442310;T:1527753110;N:98215,100,100,,,1615736111,2488501654,2531442310,1527753110,98215,SRX18229303,SRS15725465,SRA1538278,University of Birmingham|Cancer and Genomic Sciences,University of Birmingham,2,0.97483,0.97192,0.26611,0.25011,0.94566,0.94381,0.8908,0.88996,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United Kingdom,2022-11-10,Blastula,Embryo,Whole Organism,All anatomical structures
72118,SRR22252690,SRX18229302,SRS15725465,SRP407132,PRJNA900028,The miR 430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation,PRJNA900028,Other,In anamniote embryos the major wave of zygotic genome activation starts during the mid blastula transition. However  some genes escape global genome repression and are activated substantially earlier and shape the minor wave of genome activation. The mechanisms underlying the minor wave of genome activation are little understood. We explored the genomic organisation and cis regulatory mechanisms of a transcription body  in which the minor wave of genome activation is first detected in zebrafish. We identified the miR 430 cluster with excessive copy number and highest density of Pol II transcribed promoters in the genome  that is required for forming the transcription body. However  this transcription body is not essential for  nor encompasses minor wave transcription globally. Instead  distinct minor wave specific promoter architecture suggests promoter autonomous mechanisms regulate the minor wave of genome activation. These minor wave specific features also suggest distinct transcription initiation mechanisms between the minor and major wave of genome activation.,,,,,gol CRISPRi CON,,strain:AB|dev stage:512 cell|sex:NA|tissue:whole embryo|treatment:dCas9 inhibition of gol transcription control|BioSampleModel:Model organism or animal,,,,,,,,,Nascent EU RNA seq post gol CRISPRi control  replicate 1,gol CRISPRi CON REP1,gol CRISPRi CON REP1,Click iT Nascent RNA Capture,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP407132,,,GolConRP1_1.fastq.gz GolConRP1_2.fastq.gz,fastq fastq,5765491800.0,28827459.0,GolConRP1 1.fastq.gz,0:100 1:100,A:1160184949;C:1737858564;G:1774520509;T:1092858705;N:69073,100,100,,,1160184949,1737858564,1774520509,1092858705,69073,SRX18229302,SRS15725465,SRA1538278,University of Birmingham|Cancer and Genomic Sciences,University of Birmingham,2,0.92381,0.92176,0.25369,0.23487,0.94371,0.94308,0.9242,0.87185,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United Kingdom,2022-11-10,Blastula,Embryo,Whole Organism,All anatomical structures