rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
9927,ERR4321734,ERX4268592,ERS4808149,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl uni R 3,SAMEA7047515,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047515|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni R 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni R 3|sampling site:right cerebral hemisphere|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:Ctrl uni R 3 p,Ctrl uni R 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,Ctrl_uni_R_3_1.txt Ctrl_uni_R_3_2.txt,fastq fastq,7001062560.0,43756641.0,E MTAB 9321:Ctrl uni R 3 ,0:80 1:80,A:1691997382;C:1785031961;G:1794429141;T:1728559618;N:1044458,80,80,,,1691997382,1785031961,1794429141,1728559618,1044458,ERX4268592,ERS4808149,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.93339,0.93586,0.30761,0.30942,0.77031,0.77285,0.6535,0.63203,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9928,ERR4321733,ERX4268591,ERS4808148,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl uni R 2,SAMEA7047514,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047514|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni R 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni R 2|sampling site:right cerebral hemisphere|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:Ctrl uni R 2 p,Ctrl uni R 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,Ctrl_uni_R_2_1.txt Ctrl_uni_R_2_2.txt,fastq fastq,6922683200.0,43266770.0,E MTAB 9321:Ctrl uni R 2 ,0:80 1:80,A:1632897692;C:1799983634;G:1813073970;T:1675697152;N:1030752,80,80,,,1632897692,1799983634,1813073970,1675697152,1030752,ERX4268591,ERS4808148,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.9343,0.93678,0.30732,0.30767,0.77226,0.77496,0.67322,0.638,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9929,ERR4321732,ERX4268590,ERS4808147,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl uni R 1,SAMEA7047513,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047513|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni R 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni R 1|sampling site:right cerebral hemisphere|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:Ctrl uni R 1 p,Ctrl uni R 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,Ctrl_uni_R_1_1.txt Ctrl_uni_R_1_2.txt,fastq fastq,7277767680.0,45486048.0,E MTAB 9321:Ctrl uni R 1 ,0:80 1:80,A:1716271935;C:1890805720;G:1910764817;T:1758823538;N:1101670,80,80,,,1716271935,1890805720,1910764817,1758823538,1101670,ERX4268590,ERS4808147,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.93132,0.93607,0.29495,0.29694,0.77916,0.78023,0.66985,0.69546,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9930,ERR4321731,ERX4268589,ERS4808146,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl uni L 3,SAMEA7047512,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047512|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni L 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni L 3|sampling site:left cerebral hemisphere|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:Ctrl uni L 3 p,Ctrl uni L 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,Ctrl_uni_L_3_1.txt Ctrl_uni_L_3_2.txt,fastq fastq,6575179520.0,41094872.0,E MTAB 9321:Ctrl uni L 3 ,0:80 1:80,A:1482672127;C:1776068618;G:1790187841;T:1525260758;N:990176,80,80,,,1482672127,1776068618,1790187841,1525260758,990176,ERX4268589,ERS4808146,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.94459,0.94749,0.2565,0.25972,0.77816,0.77881,0.67376,0.6469,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9931,ERR4321730,ERX4268588,ERS4808145,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl uni L 2,SAMEA7047511,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047511|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni L 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni L 2|sampling site:left cerebral hemisphere|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:Ctrl uni L 2 p,Ctrl uni L 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,Ctrl_uni_L_2_1.txt Ctrl_uni_L_2_2.txt,fastq fastq,7275818080.0,45473863.0,E MTAB 9321:Ctrl uni L 2 ,0:80 1:80,A:1706173762;C:1899925486;G:1918514584;T:1750098284;N:1105964,80,80,,,1706173762,1899925486,1918514584,1750098284,1105964,ERX4268588,ERS4808145,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.93448,0.93897,0.29227,0.29368,0.77299,0.77587,0.67483,0.69924,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9932,ERR4321729,ERX4268587,ERS4808144,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl uni L 1,SAMEA7047510,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047510|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:Ctrl uni L 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:Ctrl uni L 1|sampling site:left cerebral hemisphere|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:Ctrl uni L 1 p,Ctrl uni L 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,Ctrl_uni_L_1_1.txt Ctrl_uni_L_1_2.txt,fastq fastq,6259547520.0,39122172.0,E MTAB 9321:Ctrl uni L 1 ,0:80 1:80,A:1504594075;C:1603950703;G:1614410199;T:1535635583;N:956960,80,80,,,1504594075,1603950703,1614410199,1535635583,956960,ERX4268587,ERS4808144,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.92994,0.93276,0.31313,0.31395,0.77195,0.77372,0.66568,0.6882,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9933,ERR4321728,ERX4268586,ERS4808143,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl uni 3,SAMEA7047509,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047509|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 3|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl uni 3 p,3dpl uni 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_uni_3_1.txt 3dpl_uni_3_2.txt,fastq fastq,7967977760.0,49799861.0,E MTAB 9321:3dpl uni 3 ,0:80 1:80,A:2260216672;C:1639328793;G:1824529883;T:2241676126;N:2226286,80,80,,,2260216672,1639328793,1824529883,2241676126,2226286,ERX4268586,ERS4808143,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.90526,0.90173,0.44801,0.44169,0.73827,0.74854,0.51874,0.52672,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9934,ERR4321727,ERX4268585,ERS4808142,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl uni 2,SAMEA7047508,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047508|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 2|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl uni 2 p,3dpl uni 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_uni_2_1.txt 3dpl_uni_2_2.txt,fastq fastq,9215409600.0,57596310.0,E MTAB 9321:3dpl uni 2 ,0:80 1:80,A:2620502481;C:1914345031;G:2080364714;T:2597606056;N:2591318,80,80,,,2620502481,1914345031,2080364714,2597606056,2591318,ERX4268585,ERS4808142,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91412,0.91102,0.42824,0.4207,0.73091,0.73671,0.52094,0.52307,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9935,ERR4321726,ERX4268584,ERS4808141,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl uni 1,SAMEA7047507,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047507|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl uni 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl uni 1|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl uni 1 p,3dpl uni 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_uni_1_1.txt 3dpl_uni_1_2.txt,fastq fastq,9713477280.0,60709233.0,E MTAB 9321:3dpl uni 1 ,0:80 1:80,A:2666518127;C:1984727973;G:2436235221;T:2623269258;N:2726701,80,80,,,2666518127,1984727973,2436235221,2623269258,2726701,ERX4268584,ERS4808141,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91468,0.89921,0.41764,0.40764,0.73403,0.74608,0.52391,0.52748,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9936,ERR4321725,ERX4268583,ERS4808140,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl uni 3,SAMEA7047506,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047506|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 3|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl uni 3 p,20hpl uni 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_uni_3_1.txt 20hpl_uni_3_2.txt,fastq fastq,8675853280.0,54224083.0,E MTAB 9321:20hpl uni 3 ,0:80 1:80,A:2365631089;C:1890091876;G:2067595442;T:2325000100;N:27534773,80,80,,,2365631089,1890091876,2067595442,2325000100,27534773,ERX4268583,ERS4808140,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.90101,0.90675,0.42722,0.4249,0.74337,0.75294,0.51417,0.52085,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9937,ERR4321724,ERX4268582,ERS4808139,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl uni 2,SAMEA7047505,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047505|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 2|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl uni 2 p,20hpl uni 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_uni_2_1.txt 20hpl_uni_2_2.txt,fastq fastq,4735091040.0,29594319.0,E MTAB 9321:20hpl uni 2 ,0:80 1:80,A:1061979324;C:1276598224;G:1297035795;T:1098757554;N:720143,80,80,,,1061979324,1276598224,1297035795,1098757554,720143,ERX4268582,ERS4808139,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.9384,0.94067,0.25644,0.25853,0.7877,0.78843,0.69474,0.72221,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9938,ERR4321723,ERX4268581,ERS4808138,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl uni 1,SAMEA7047504,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047504|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl uni 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl uni 1|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl uni 1 p,20hpl uni 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_uni_1_1.txt 20hpl_uni_1_2.txt,fastq fastq,10122915040.0,63268219.0,E MTAB 9321:20hpl uni 1 ,0:80 1:80,A:2917523358;C:2094720604;G:2205586268;T:2872641443;N:32443367,80,80,,,2917523358,2094720604,2205586268,2872641443,32443367,ERX4268581,ERS4808138,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.90867,0.91132,0.46283,0.46241,0.74858,0.75357,0.53145,0.53522,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9939,ERR4321722,ERX4268580,ERS4808137,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl in IWR 3,SAMEA7047503,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047503|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 3|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl in IWR 3 p,3dpl in IWR 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_in_IWR_3_1.txt 3dpl_in_IWR_3_2.txt,fastq fastq,9476807840.0,59230049.0,E MTAB 9321:3dpl in IWR 3 ,0:80 1:80,A:2639849526;C:1994343199;G:2238787041;T:2601193111;N:2634963,80,80,,,2639849526,1994343199,2238787041,2601193111,2634963,ERX4268580,ERS4808137,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91666,0.90016,0.41957,0.41098,0.72679,0.73596,0.52875,0.53529,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9940,ERR4321721,ERX4268579,ERS4808136,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl in IWR 2,SAMEA7047502,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047502|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 2|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl in IWR 2 p,3dpl in IWR 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_in_IWR_2_1.txt 3dpl_in_IWR_2_2.txt,fastq fastq,7305898240.0,45661864.0,E MTAB 9321:3dpl in IWR 2 ,0:80 1:80,A:2035812198;C:1535985603;G:1714961805;T:2017139933;N:1998701,80,80,,,2035812198,1535985603,1714961805,2017139933,1998701,ERX4268579,ERS4808136,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91721,0.90787,0.40247,0.39455,0.72916,0.74097,0.52622,0.52732,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9941,ERR4321720,ERX4268578,ERS4808135,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl in IWR 1,SAMEA7047501,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047501|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in IWR 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in IWR 1|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl in IWR 1 p,3dpl in IWR 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_in_IWR_1_1.txt 3dpl_in_IWR_1_2.txt,fastq fastq,5893946400.0,36837165.0,E MTAB 9321:3dpl in IWR 1 ,0:80 1:80,A:1170533263;C:1737932152;G:1758304403;T:1226290662;N:885920,80,80,,,1170533263,1737932152,1758304403,1226290662,885920,ERX4268578,ERS4808135,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.95436,0.95726,0.17474,0.17743,0.77031,0.7726,0.72793,0.73265,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9942,ERR4321719,ERX4268577,ERS4808134,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl in IWR 3,SAMEA7047500,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047500|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 3|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl in IWR 3 p,20hpl in IWR 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_in_IWR_3_1.txt 20hpl_in_IWR_3_2.txt,fastq fastq,6198105920.0,38738162.0,E MTAB 9321:20hpl in IWR 3 ,0:80 1:80,A:1441128066;C:1626141975;G:1647720111;T:1482170340;N:945428,80,80,,,1441128066,1626141975,1647720111,1482170340,945428,ERX4268577,ERS4808134,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.94334,0.94604,0.2532,0.25458,0.75941,0.76086,0.66584,0.67193,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9943,ERR4321718,ERX4268576,ERS4808133,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl in IWR 2,SAMEA7047499,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047499|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 2|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl in IWR 2 p,20hpl in IWR 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_in_IWR_2_1.txt 20hpl_in_IWR_2_2.txt,fastq fastq,8244868480.0,51530428.0,E MTAB 9321:20hpl in IWR 2 ,0:80 1:80,A:2326026663;C:1706321438;G:1913900194;T:2272224793;N:26395392,80,80,,,2326026663,1706321438,1913900194,2272224793,26395392,ERX4268576,ERS4808133,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91275,0.90955,0.44535,0.44255,0.74456,0.75298,0.53931,0.53823,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9944,ERR4321717,ERX4268575,ERS4808132,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl in IWR 1,SAMEA7047498,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047498|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in IWR 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in IWR 1|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl in IWR 1 p,20hpl in IWR 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions 4 1 3 3a 4 7 7a Hexahydro 1 3 dioxo 4 7 methano 2H isoindol 2 yl N 8 quinolinyl Benzamide IWR 1 was added to fish water at 20 micromolar. Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:IWR 1|Experimental Factor: dose:20|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_in_IWR_1_1.txt 20hpl_in_IWR_1_2.txt,fastq fastq,8946910240.0,55918189.0,E MTAB 9321:20hpl in IWR 1 ,0:80 1:80,A:2523280880;C:1876368998;G:2029673577;T:2489111763;N:28475022,80,80,,,2523280880,1876368998,2029673577,2489111763,28475022,ERX4268575,ERS4808132,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91067,0.90286,0.45601,0.44987,0.7335,0.74119,0.51443,0.51662,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9945,ERR4321716,ERX4268574,ERS4808131,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl in 3,SAMEA7047497,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:29Z|External Id:SAMEA7047497|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:29Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 3|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl in 3 p,3dpl in 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_in_3_1.txt 3dpl_in_3_2.txt,fastq fastq,9556572640.0,59728579.0,E MTAB 9321:3dpl in 3 ,0:80 1:80,A:2669191918;C:1902750470;G:2361798477;T:2620161228;N:2670547,80,80,,,2669191918,1902750470,2361798477,2620161228,2670547,ERX4268574,ERS4808131,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91175,0.89329,0.42236,0.413,0.72671,0.74156,0.52222,0.52828,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9946,ERR4321715,ERX4268573,ERS4808130,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl in 2,SAMEA7047496,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047496|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 2|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl in 2 p,3dpl in 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_in_2_1.txt 3dpl_in_2_2.txt,fastq fastq,10848117120.0,67800732.0,E MTAB 9321:3dpl in 2 ,0:80 1:80,A:2935795866;C:2381506213;G:2652994352;T:2874780262;N:3040427,80,80,,,2935795866,2381506213,2652994352,2874780262,3040427,ERX4268573,ERS4808130,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91965,0.89867,0.42158,0.41268,0.73342,0.74249,0.56938,0.56978,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9947,ERR4321714,ERX4268572,ERS4808129,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl in 1,SAMEA7047495,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047495|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:3dpl in 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:3dpl in 1|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:3dpl in 1 p,3dpl in 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,3dpl_in_1_1.txt 3dpl_in_1_2.txt,fastq fastq,12371488960.0,77321806.0,E MTAB 9321:3dpl in 1 ,0:80 1:80,A:3438091571;C:2664088451;G:2872543859;T:3393310483;N:3454596,80,80,,,3438091571,2664088451,2872543859,3393310483,3454596,ERX4268572,ERS4808129,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.92096,0.90884,0.39682,0.3843,0.72614,0.73401,0.53892,0.53838,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9948,ERR4321713,ERX4268571,ERS4808128,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl in 3,SAMEA7047494,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047494|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 3|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl in 3 p,20hpl in 3 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_in_3_1.txt 20hpl_in_3_2.txt,fastq fastq,10464739040.0,65404619.0,E MTAB 9321:20hpl in 3 ,0:80 1:80,A:2995469080;C:2169447356;G:2318878018;T:2947444090;N:33500496,80,80,,,2995469080,2169447356,2318878018,2947444090,33500496,ERX4268571,ERS4808128,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.9098,0.91109,0.46632,0.4653,0.74276,0.75077,0.51527,0.52148,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9949,ERR4321712,ERX4268570,ERS4808127,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl in 2,SAMEA7047493,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047493|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 2|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl in 2 p,20hpl in 2 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_in_2_1.txt 20hpl_in_2_2.txt,fastq fastq,8520377280.0,53252358.0,E MTAB 9321:20hpl in 2 ,0:80 1:80,A:2416849489;C:1735946163;G:1978475279;T:2361749789;N:27356560,80,80,,,2416849489,1735946163,1978475279,2361749789,27356560,ERX4268570,ERS4808127,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.91434,0.91,0.42899,0.42662,0.73917,0.74876,0.52201,0.51826,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
9950,ERR4321711,ERX4268569,ERS4808126,ERP122765,PRJEB39269,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/ß catenin signaling at the early wound healing stage,E-MTAB-9321,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of both the lesioned and unlesioned hemispheres of the zebrafish telencephalon at early wound healing 20 hour post lesion and early proliferative 3 day post lesion stages of regeneration. Moreover  we uncover Wnt/ß catenin signaling as a key pathway that is activated at the early wound healing stage.,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 06,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,20hpl in 1,SAMEA7047492,Izmir Biomedicine and Genome Center,ENA FIRST PUBLIC:2020 10 05T04:05:55Z|ENA LAST UPDATE:2020 07 06T18:12:28Z|External Id:SAMEA7047492|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2020 10 05T04:05:55Z|INSDC last update:2020 07 06T18:12:28Z|INSDC status:public|Submitter Id:E MTAB 9321:20hpl in 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:6xTCF/Lef miniP:2dGFP|organism part:telencephalon|sample name:E MTAB 9321:20hpl in 1|scientific name:Danio rerio|sex:male,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,E MTAB 9321:20hpl in 1 p,20hpl in 1 p,Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions DMSO was added to fish water Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: compound:dimethyl sulfoxide|Experimental Factor: time:20,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP122765,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the regenerating zebrafish telencephalon unravels a key regulatory role for Wnt/β catenin signaling at the early wound healing stage,ENA FIRST PUBLIC:2020 10 05|ENA LAST UPDATE:2020 07 07,20hpl_in_1_1.txt 20hpl_in_1_2.txt,fastq fastq,7150452800.0,44690330.0,E MTAB 9321:20hpl in 1 ,0:80 1:80,A:1771803292;C:1779551247;G:1798541378;T:1799460160;N:1096723,80,80,,,1771803292,1779551247,1798541378,1799460160,1096723,ERX4268569,ERS4808126,ERA2763798,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.92622,0.93038,0.35018,0.35291,0.7727,0.77396,0.64402,0.65297,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2020-07-06,Adult,Adult,Brain,Nervous System
10324,ERR7384926,ERX6953430,ERS8736631,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl 5,SAMEA11086968,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086968|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 5|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 5|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:Ctrl 5 p,Ctrl 5 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,Ctrl-5_1.fastq.gz Ctrl-5_2.fastq.gz,fastq fastq,7836077760.0,48975486.0,E MTAB 11163:Ctrl 5 ,0:80 1:80,A:2197807782;C:1719033269;G:1762364798;T:2156195280;N:676631,80,80,,,2197807782,1719033269,1762364798,2156195280,676631,ERX6953430,ERS8736631,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.93458,0.93849,0.19317,0.18598,0.72855,0.72784,0.48113,0.4814,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10325,ERR7384925,ERX6953429,ERS8736630,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl 4,SAMEA11086967,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086967|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 4|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:Ctrl 4 p,Ctrl 4 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,Ctrl-4_1.fastq.gz Ctrl-4_2.fastq.gz,fastq fastq,11841052800.0,74006580.0,E MTAB 11163:Ctrl 4 ,0:80 1:80,A:3269511229;C:2469072822;G:2920921930;T:3177156542;N:4390277,80,80,,,3269511229,2469072822,2920921930,3177156542,4390277,ERX6953429,ERS8736630,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.86759,0.86792,0.43044,0.42689,0.75469,0.76717,0.55291,0.55788,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10326,ERR7384924,ERX6953428,ERS8736629,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl 3,SAMEA11086966,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086966|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 3|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:Ctrl 3 p,Ctrl 3 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,Ctrl-3_1.fastq.gz Ctrl-3_2.fastq.gz,fastq fastq,14286470240.0,89290439.0,E MTAB 11163:Ctrl 3 ,0:80 1:80,A:3956940377;C:3071545407;G:3372465520;T:3880155204;N:5363732,80,80,,,3956940377,3071545407,3372465520,3880155204,5363732,ERX6953428,ERS8736629,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.87493,0.87449,0.43889,0.44065,0.7541,0.76402,0.5369,0.53575,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10327,ERR7384923,ERX6953427,ERS8736628,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl 2,SAMEA11086965,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086965|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 2|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:Ctrl 2 p,Ctrl 2 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,Ctrl-2_1.fastq.gz Ctrl-2_2.fastq.gz,fastq fastq,13169862240.0,82311639.0,E MTAB 11163:Ctrl 2 ,0:80 1:80,A:3683560119;C:2823399426;G:3030116974;T:3627855699;N:4930022,80,80,,,3683560119,2823399426,3030116974,3627855699,4930022,ERX6953427,ERS8736628,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.86757,0.87095,0.44548,0.45008,0.75536,0.76343,0.53366,0.54558,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10328,ERR7384922,ERX6953426,ERS8736627,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Ctrl 1,SAMEA11086964,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086964|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:Ctrl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|organism part:telencephalon|sample name:E MTAB 11163:Ctrl 1|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:Ctrl 1 p,Ctrl 1 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:n1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,Ctrl-1_1.fastq.gz Ctrl-1_2.fastq.gz,fastq fastq,11349398560.0,70933741.0,E MTAB 11163:Ctrl 1 ,0:80 1:80,A:3132234873;C:2275439795;G:2903048149;T:3034427880;N:4247863,80,80,,,3132234873,2275439795,2903048149,3034427880,4247863,ERX6953426,ERS8736627,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.86563,0.85769,0.45807,0.45717,0.75542,0.76999,0.53285,0.52788,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10329,ERR7384921,ERX6953425,ERS8736626,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl 4,SAMEA11086962,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086962|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 4|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:3dpl 4 p,3dpl 4 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,3dpl-4_1.fastq.gz 3dpl-4_2.fastq.gz,fastq fastq,12269133600.0,76682085.0,E MTAB 11163:3dpl 4 ,0:80 1:80,A:3308670822;C:2612099729;G:3097254260;T:3246547111;N:4561678,80,80,,,3308670822,2612099729,3097254260,3246547111,4561678,ERX6953425,ERS8736626,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.88949,0.88423,0.41382,0.41463,0.73856,0.75209,0.54087,0.53814,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10330,ERR7384920,ERX6953424,ERS8736625,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl 3,SAMEA11086961,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086961|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 3|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:3dpl 3 p,3dpl 3 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,3dpl-3_1.fastq.gz 3dpl-3_2.fastq.gz,fastq fastq,12561832800.0,78511455.0,E MTAB 11163:3dpl 3 ,0:80 1:80,A:3518655485;C:2691495460;G:2879365772;T:3467606057;N:4710026,80,80,,,3518655485,2691495460,2879365772,3467606057,4710026,ERX6953424,ERS8736625,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.86128,0.86324,0.43991,0.44309,0.73998,0.74761,0.5283,0.52762,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10331,ERR7384919,ERX6953423,ERS8736624,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl 2,SAMEA11086960,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086960|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 2|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:3dpl 2 p,3dpl 2 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,3dpl-2_1.fastq.gz 3dpl-2_2.fastq.gz,fastq fastq,12727937600.0,79549610.0,E MTAB 11163:3dpl 2 ,0:80 1:80,A:3511550580;C:2718113416;G:3063150762;T:3430381211;N:4741631,80,80,,,3511550580,2718113416,3063150762,3430381211,4741631,ERX6953423,ERS8736624,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.88126,0.88294,0.42008,0.41964,0.72687,0.73811,0.52924,0.52812,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10332,ERR7384918,ERX6953422,ERS8736623,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,3dpl 1,SAMEA11086959,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086959|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:3dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:3dpl 1|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:3dpl 1 p,3dpl 1 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:3,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,3dpl-1_1.fastq.gz 3dpl-1_2.fastq.gz,fastq fastq,10910301440.0,68189384.0,E MTAB 11163:3dpl 1 ,0:80 1:80,A:2970902938;C:2403780256;G:2602413517;T:2929186974;N:4017755,80,80,,,2970902938,2403780256,2602413517,2929186974,4017755,ERX6953422,ERS8736623,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.84003,0.84172,0.34597,0.34824,0.71589,0.72466,0.52558,0.52286,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10333,ERR7384917,ERX6953421,ERS8736622,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,1dpl 5,SAMEA11086958,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086958|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 5|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 5|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:1dpl 5 p,1dpl 5 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,1dpl-5_1.fastq.gz 1dpl-5_2.fastq.gz,fastq fastq,10425544320.0,65159652.0,E MTAB 11163:1dpl 5 ,0:80 1:80,A:3050099743;C:2153241581;G:2229178430;T:2992123587;N:900979,80,80,,,3050099743,2153241581,2229178430,2992123587,900979,ERX6953421,ERS8736622,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.92853,0.93189,0.23718,0.23074,0.72366,0.72052,0.49924,0.511,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10334,ERR7384916,ERX6953420,ERS8736621,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,1dpl 4,SAMEA11086957,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086957|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 4|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:1dpl 4 p,1dpl 4 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,1dpl-4_1.fastq.gz 1dpl-4_2.fastq.gz,fastq fastq,9244695360.0,57779346.0,E MTAB 11163:1dpl 4 ,0:80 1:80,A:2617398368;C:2006695457;G:2057821797;T:2561969157;N:810581,80,80,,,2617398368,2006695457,2057821797,2561969157,810581,ERX6953420,ERS8736621,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.93687,0.94089,0.20045,0.19324,0.71674,0.71506,0.49841,0.50035,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10335,ERR7384915,ERX6953419,ERS8736620,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,1dpl 3,SAMEA11086956,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086956|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 3|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:1dpl 3 p,1dpl 3 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,1dpl-3_1.fastq.gz 1dpl-3_2.fastq.gz,fastq fastq,9373333280.0,58583333.0,E MTAB 11163:1dpl 3 ,0:80 1:80,A:2671556387;C:2008711931;G:2062635156;T:2629594613;N:835193,80,80,,,2671556387,2008711931,2062635156,2629594613,835193,ERX6953419,ERS8736620,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.93438,0.93842,0.21075,0.20463,0.71459,0.71246,0.50094,0.50105,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10336,ERR7384914,ERX6953418,ERS8736619,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,1dpl 2,SAMEA11086955,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086955|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 2|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:1dpl 2 p,1dpl 2 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,1dpl-2_1.fastq.gz 1dpl-2_2.fastq.gz,fastq fastq,9647031680.0,60293948.0,E MTAB 11163:1dpl 2 ,0:80 1:80,A:2807310022;C:2016751282;G:2080246249;T:2741889329;N:834798,80,80,,,2807310022,2016751282,2080246249,2741889329,834798,ERX6953418,ERS8736619,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.92564,0.92819,0.22329,0.21583,0.72028,0.71877,0.50128,0.50045,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10337,ERR7384913,ERX6953417,ERS8736618,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,1dpl 1,SAMEA11086954,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086954|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:1dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:1dpl 1|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:1dpl 1 p,1dpl 1 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:1,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,1dpl-1_1.fastq.gz 1dpl-1_2.fastq.gz,fastq fastq,10054666560.0,62841666.0,E MTAB 11163:1dpl 1 ,0:80 1:80,A:2921800431;C:2104003276;G:2166908855;T:2861086535;N:867463,80,80,,,2921800431,2104003276,2166908855,2861086535,867463,ERX6953417,ERS8736618,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.93251,0.9361,0.22525,0.21776,0.71806,0.71478,0.5039,0.50925,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10338,ERR7384912,ERX6953416,ERS8736617,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,14dpl 4,SAMEA11086953,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086953|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 4|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 4|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:14dpl 4 p,14dpl 4 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:14,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,14dpl-4_1.fastq.gz 14dpl-4_2.fastq.gz,fastq fastq,10510375520.0,65689847.0,E MTAB 11163:14dpl 4 ,0:80 1:80,A:2894001008;C:2230656231;G:2530263174;T:2852841235;N:2613872,80,80,,,2894001008,2230656231,2530263174,2852841235,2613872,ERX6953416,ERS8736617,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.8951,0.89119,0.46407,0.46205,0.74349,0.75043,0.52432,0.52127,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10339,ERR7384911,ERX6953415,ERS8736616,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,14dpl 3,SAMEA11086952,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086952|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 3|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 3|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:14dpl 3 p,14dpl 3 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:14,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,14dpl-3_1.fastq.gz 14dpl-3_2.fastq.gz,fastq fastq,12643445600.0,79021535.0,E MTAB 11163:14dpl 3 ,0:80 1:80,A:3542554562;C:2679505652;G:2918520292;T:3499712681;N:3152413,80,80,,,3542554562,2679505652,2918520292,3499712681,3152413,ERX6953415,ERS8736616,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.90044,0.9018,0.4852,0.48223,0.75022,0.7557,0.52769,0.50719,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10340,ERR7384910,ERX6953414,ERS8736615,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,14dpl 2,SAMEA11086951,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086951|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 2|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 2|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:14dpl 2 p,14dpl 2 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:14,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,14dpl-2_1.fastq.gz 14dpl-2_2.fastq.gz,fastq fastq,23194452640.0,144965329.0,E MTAB 11163:14dpl 2 ,0:80 1:80,A:6438735597;C:4960360012;G:5452621343;T:6336943660;N:5792028,80,80,,,6438735597,4960360012,5452621343,6336943660,5792028,ERX6953414,ERS8736615,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.90763,0.89955,0.47238,0.46518,0.7446,0.75544,0.5513,0.5514,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
10341,ERR7384909,ERX6953413,ERS8736614,ERP133301,PRJEB48872,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,E-MTAB-11163,Transcriptome Analysis,Adult zebrafish can completely regenerate a wide range of injured organs including the CNS. RNA sequencing RNA Seq is a high throughput sequencing method facilitating quantification of gene expression in a precisely manner. Development of RNA Seq technologies and their extensive data analysis methods make investigation of regulatory genes and functional gene annotations possible under specific conditions. In this study  we reveal the whole transcriptome profiles of the lesioned hemispheres of the zebrafish telencephalon at early wound healing 1 day post lesion  early proliferative 3 day post lesion and differentiation 14 day post lesion stages of regeneration.,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,,Protocols: Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,14dpl 1,SAMEA11086950,Izmir Biomedicine and Genome Center,ENA first public:2022 01 31|ENA last update:2022 01 31|External Id:SAMEA11086950|INSDC center alias:Izmir Biomedicine and Genome Center|INSDC center name:Izmir Biomedicine and Genome Center|INSDC first public:2022 01 31T00:14:07Z|INSDC last update:2022 01 31T00:14:07Z|INSDC status:public|Submitter Id:E MTAB 11163:14dpl 1|age:6 to 10|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|injury:stab lesion|organism part:telencephalon|sample name:E MTAB 11163:14dpl 1|sex:male|strain:AB,,,,,,,,,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the 3 different stages of the regenerating zebrafish telencephalon,E MTAB 11163:14dpl 1 p,14dpl 1 p,Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,Tissues were dissected under microscopy. Adult zebrafish were fed under normal conditions Dissected tissues were immersed in RNA later  and Total RNA isolation was performed. RNA seq libraries were built using the TruSeq RNA Library Preparation v2 Kit Illumina,Experimental Factor: injury:stab lesion|Experimental Factor: time:14,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,NextSeq 500,,ERP133301,NextSeq 500 paired end sequencing; Comparative transcriptome analysis of the three different stages of the regenerating zebrafish telencephalon,ENA FIRST PUBLIC:2022 01 31|ENA LAST UPDATE:2022 01 31,14dpl-1_1.fastq.gz 14dpl-1_2.fastq.gz,fastq fastq,9754805920.0,60967537.0,E MTAB 11163:14dpl 1 ,0:80 1:80,A:2682345750;C:2040914324;G:2394726385;T:2634385060;N:2434401,80,80,,,2682345750,2040914324,2394726385,2634385060,2434401,ERX6953413,ERS8736614,ERA7396457,Izmir Biomedicine and Genome Center|European Nucleotide Archive,Izmir Biomedicine and Genome Center|European Nucleotide Archive,2,0.89908,0.89179,0.47056,0.46838,0.74231,0.7543,0.52672,0.52558,80,80,B,B,biological fallback assumption,illumina,nextseq,full_length,random_priming,trueseq,bulk,unknown,unknown,,Turkey,2022-01-31,Adult,Adult,Brain,Nervous System
66962,SRR16912780,SRX13105209,SRS11041502,SRP345473,PRJNA779441,Single Cell RNA Sequencing Characterizes the Molecular Heterogeneity of the Larval Zebrafish Optic Tectum,PRJNA779441,Other,The optic tectum OT is a multilaminated midbrain structure that acts as the primary retinorecipient in the zebrafish brain. Homologous to the mammalian superior colliculus  the OT is responsible for the reception and integration of stimuli  followed by elicitation of salient behavioral responses. While the OT has been the focus of functional experiments for decades  less is known concerning specific cell types  microcircuitry  and their individual functions within the OT. Recent efforts have contributed substantially to the knowledge of tectal cell types; however  a comprehensive cell catalog is incomplete. Here we contribute to this growing effort by applying single cell RNA sequencing scRNA seq to characterize the transcriptomic profiles of tectal cells labeled by the transgenic enhancer trap line y304Etcfos:Gal4;UAS:Kaede. We sequenced 13 320 cells  a 4X cellular coverage  and identified 25 putative OT cell populations. Within those cells  we identified several mature and developing neuronal populations  as well as non neuronal cell types including oligodendrocytes  microglia  and radial glia. Although most mature neurons demonstrate GABAergic activity  several glutamatergic populations are present  as well as one glycinergic population. We also conducted Gene Ontology analysis to identify enriched biological processes  and computed RNA velocity to infer current and future transcriptional cell states. Finally  we conducted in situ hybridization to validate our bioinformatic analyses and spatially map select clusters. In conclusion  the larval zebrafish OT is a complex structure containing at least 25 transcriptionally distinct cell populations. To our knowledge  this is the first time scRNA seq has been applied to explore the OT alone and in depth.,,,,,Optic Tectum Run 2,,strain:y304Etcfos:Gal4; UAS:Kaede|age:7dpf|dev stage:Larval|sex:Unknown|tissue:Kaede+ midbrain cells|sample type:Methanol fixed FAC sorted cells|Run Number:2|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of danio rerio: larval optic tectum,18798R,18798R,10X Genomics Next GEM Single Cell three prime Gene Expression Library prep v3.1 with UDI,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,other,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP345473,,,18798X1_210405_A00421_0312_BHYYKVDSXY_S1_L004_I1_001.fastq.gz 18798X1_210405_A00421_0312_BHYYKVDSXY_S1_L004_I2_001.fastq.gz 18798X1_210405_A00421_0312_BHYYKVDSXY_S1_L004_R1_001.fastq.gz 18798X1_210405_A00421_0312_BHYYKVDSXY_S1_L004_R2_001.fastq.gz,fastq fastq fastq fastq,51241551174.0,258795713.0,18798X1 210405 A00421 0312 BHYYKVDSXY S1 L004 I1 001.fastq.gz,0:10 1:10 2:28 3:150,A:11347233208;C:8190548246;G:9193124724;T:10088035538;N:415234,10,10,28,150,11347233208,8190548246,9193124724,10088035538,415234,SRX13105209,SRS11041502,SRA1327223,Brigham Young University|Cell Biology and Physiology,Brigham Young University,1,0.87747,,0.31462,,0.80095,,0.57402,,150,,B,,usable mapping rate,illumina,novaseq_era,3prime,other,unknown,sc,single_cell_droplet,10x,,United States,2021-11-10,Larval,Larval,Brain,Nervous System
66963,SRR16912781,SRX13105208,SRS11041501,SRP345473,PRJNA779441,Single Cell RNA Sequencing Characterizes the Molecular Heterogeneity of the Larval Zebrafish Optic Tectum,PRJNA779441,Other,The optic tectum OT is a multilaminated midbrain structure that acts as the primary retinorecipient in the zebrafish brain. Homologous to the mammalian superior colliculus  the OT is responsible for the reception and integration of stimuli  followed by elicitation of salient behavioral responses. While the OT has been the focus of functional experiments for decades  less is known concerning specific cell types  microcircuitry  and their individual functions within the OT. Recent efforts have contributed substantially to the knowledge of tectal cell types; however  a comprehensive cell catalog is incomplete. Here we contribute to this growing effort by applying single cell RNA sequencing scRNA seq to characterize the transcriptomic profiles of tectal cells labeled by the transgenic enhancer trap line y304Etcfos:Gal4;UAS:Kaede. We sequenced 13 320 cells  a 4X cellular coverage  and identified 25 putative OT cell populations. Within those cells  we identified several mature and developing neuronal populations  as well as non neuronal cell types including oligodendrocytes  microglia  and radial glia. Although most mature neurons demonstrate GABAergic activity  several glutamatergic populations are present  as well as one glycinergic population. We also conducted Gene Ontology analysis to identify enriched biological processes  and computed RNA velocity to infer current and future transcriptional cell states. Finally  we conducted in situ hybridization to validate our bioinformatic analyses and spatially map select clusters. In conclusion  the larval zebrafish OT is a complex structure containing at least 25 transcriptionally distinct cell populations. To our knowledge  this is the first time scRNA seq has been applied to explore the OT alone and in depth.,,,,,Optic Tectum Run 1,,strain:y304Etcfos:Gal4; UAS:Kaede|age:7dpf|dev stage:Larval|sex:Unknown|tissue:Kaede+ midbrain cells|sample type:Methanol fixed FAC sorted cells|Run Number:1|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of danio rerio: larval optic tectum,18507R,18507R,10X Genomics Next GEM Single Cell three prime Gene Expression Library prep v3.1 with UDI,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,other,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP345473,,,18507X1_201113_A00421_0256_BHLY3JDSXY_S5_L003_I1_001.fastq.gz 18507X1_201113_A00421_0256_BHLY3JDSXY_S5_L003_I2_001.fastq.gz 18507X1_201113_A00421_0256_BHLY3JDSXY_S5_L003_R1_001.fastq.gz 18507X1_201113_A00421_0256_BHLY3JDSXY_S5_L003_R2_001.fastq.gz,fastq fastq fastq fastq,64682907300.0,326681350.0,18507X1 201113 A00421 0256 BHLY3JDSXY S5 L003 I1 001.fastq.gz,0:10 1:10 2:28 3:150,A:14518921141;C:9982364575;G:11381145187;T:13119455374;N:316223,10,10,28,150,14518921141,9982364575,11381145187,13119455374,316223,SRX13105208,SRS11041501,SRA1327223,Brigham Young University|Cell Biology and Physiology,Brigham Young University,1,0.87166,,0.34827,,0.82298,,0.60301,,150,,B,,usable mapping rate,illumina,novaseq_era,3prime,other,unknown,sc,single_cell_droplet,10x,,United States,2021-11-11,Larval,Larval,Brain,Nervous System
67053,SRR17026704,SRX13216734,SRS11142397,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,I,C KO,CK3,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 9|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CK3,CK3,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CK3_R1.fastq.gz CK3_R2.fastq.gz,fastq fastq,7416029478.0,24556389.0,CK3 R1.fastq.gz,0:151 1:151,A:2009338296;C:1698532048;G:1730113268;T:1978028729;N:17137,151,151,,,2009338296,1698532048,1730113268,1978028729,17137,SRX13216734,SRS11142397,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.9353,0.93623,0.08453,0.08527,0.71551,0.71618,0.49695,0.49568,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67054,SRR17026705,SRX13216733,SRS11142398,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,H,C KO,CK2,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 8|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CK2,CK2,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CK2_R1.fastq.gz CK2_R2.fastq.gz,fastq fastq,7590854258.0,25135279.0,CK2 R1.fastq.gz,0:151 1:151,A:2041517653;C:1754766573;G:1784738177;T:2009814138;N:17717,151,151,,,2041517653,1754766573,1784738177,2009814138,17717,SRX13216733,SRS11142398,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.93771,0.93725,0.07877,0.07858,0.71739,0.71747,0.49923,0.49556,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67055,SRR17026706,SRX13216732,SRS11142395,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,G,C KO,CK1,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CK1,CK1,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CK1_R1.fastq.gz CK1_R2.fastq.gz,fastq fastq,6970012926.0,23079513.0,CK1 R1.fastq.gz,0:151 1:151,A:1881234941;C:1605828944;G:1630994283;T:1851938444;N:16314,151,151,,,1881234941,1605828944,1630994283,1851938444,16314,SRX13216732,SRS11142395,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.93953,0.93921,0.07632,0.07583,0.71853,0.71859,0.49982,0.50306,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67056,SRR17026707,SRX13216731,SRS11142393,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,F,C Male,CM3,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CM3,CM3,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CM3_R1.fastq.gz CM3_R2.fastq.gz,fastq fastq,6554074064.0,21702232.0,CM3 R1.fastq.gz,0:151 1:151,A:1751561620;C:1527225291;G:1555097615;T:1720174098;N:15440,151,151,,,1751561620,1527225291,1555097615,1720174098,15440,SRX13216731,SRS11142393,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.94488,0.9451,0.06843,0.0681,0.72829,0.72817,0.50055,0.5012,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67057,SRR17026708,SRX13216730,SRS11142392,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,E,C Male,CM2,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CM2,CM2,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CM2_R1.fastq.gz CM2_R2.fastq.gz,fastq fastq,6775620962.0,22435831.0,CM2 R1.fastq.gz,0:151 1:151,A:1822502937;C:1567415362;G:1594060885;T:1791625779;N:15999,151,151,,,1822502937,1567415362,1594060885,1791625779,15999,SRX13216730,SRS11142392,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.94019,0.94062,0.07513,0.0751,0.71847,0.71922,0.4841,0.49018,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67058,SRR17026709,SRX13216729,SRS11142394,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,D,C Male,CM1,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CM1,CM1,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CM1_R1.fastq.gz CM1_R2.fastq.gz,fastq fastq,7547878148.0,24992974.0,CM1 R1.fastq.gz,0:151 1:151,A:2049794521;C:1727106839;G:1752167931;T:2018790733;N:18124,151,151,,,2049794521,1727106839,1752167931,2018790733,18124,SRX13216729,SRS11142394,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.93694,0.9365,0.08422,0.08378,0.71658,0.71654,0.49676,0.4978,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67059,SRR17026710,SRX13216728,SRS11142390,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,C,C Female,CF3,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:female|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CF3,CF3,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CF3_R1.fastq.gz CF3_R2.fastq.gz,fastq fastq,6471047922.0,21427311.0,CF3 R1.fastq.gz,0:151 1:151,A:1715522671;C:1521915743;G:1546665820;T:1686928589;N:15099,151,151,,,1715522671,1521915743,1546665820,1686928589,15099,SRX13216728,SRS11142390,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.94618,0.94583,0.05607,0.05556,0.73184,0.73158,0.5025,0.50567,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67060,SRR17026711,SRX13216727,SRS11142391,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,B,C Female,CF2,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:female|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CF2,CF2,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CF2_R1.fastq.gz CF2_R2.fastq.gz,fastq fastq,7818271432.0,25888316.0,CF2 R1.fastq.gz,0:151 1:151,A:2101158671;C:1810803776;G:1839717812;T:2066573107;N:18066,151,151,,,2101158671,1810803776,1839717812,2066573107,18066,SRX13216727,SRS11142391,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.93945,0.93943,0.06978,0.06927,0.72034,0.71932,0.49266,0.48929,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
67061,SRR17026712,SRX13216726,SRS11142389,SRP347573,PRJNA783180,Zebrafish  Brain,PRJNA783180,Other,Zebrafish Brain,,,A,C Female,CF1,,strain:missing|isolate:missing|breed:missing|age:90dpf|sex:female|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Brain,CF1,CF1,Sex,,,RNA-Seq,TRANSCRIPTOMIC,other,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP347573,,,CF1_R2.fastq.gz CF1_R1.fastq.gz,fastq fastq,7448526188.0,24663994.0,CF1 R1.fastq.gz,0:151 1:151,A:1995220552;C:1730768595;G:1757104436;T:1965415170;N:17435,151,151,,,1995220552,1730768595,1757104436,1965415170,17435,SRX13216726,SRS11142389,SRA1334340,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.9424,0.94214,0.07069,0.07015,0.71934,0.72019,0.49122,0.49476,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-11-24,Adult,Adult,Brain,Nervous System
75241,SRR26143471,SRX21856058,SRS18582323,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f35,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:35|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f35 Dl,f35 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F42-1_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L004_R1_001.fastq.gz 2556F42-2_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L005_R1_001.fastq.gz 2556F42-3_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L006_R1_001.fastq.gz 2556F42-4_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1040429325.0,20400575.0,2556F42 1 200908 D00404 0493 ACECY3ANXX TAGGCATG TATCCTCT L004 R1 001.fastq.gz,0:51,A:259587031;C:255198479;G:241421038;T:284158496;N:64281,51,,,,259587031,255198479,241421038,284158496,64281,SRX21856058,SRS18582323,SRA1717885,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.72615,,0.18087,,0.79403,,0.6392,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-09-22,Adult,Adult,Brain,Nervous System
75242,SRR25609906,SRX21337082,SRS18582315,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f22,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:22|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f22 Dc,f22 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F19-1_200821_D00404_0490_BCECNHANXX_CGATCAGT-GTAAGGAG_L004_R1_001.fastq.gz 2524F19-2_200821_D00404_0490_BCECNHANXX_CGATCAGT-GTAAGGAG_L005_R1_001.fastq.gz 2524F19-3_200821_D00404_0490_BCECNHANXX_CGATCAGT-GTAAGGAG_L006_R1_001.fastq.gz,fastq fastq fastq,1368729075.0,26837825.0,2524F19 1 200821 D00404 0490 BCECNHANXX CGATCAGT GTAAGGAG L004 R1 001.fastq.gz,0:51,A:360325665;C:317884758;G:295959533;T:394421769;N:137350,51,,,,360325665,317884758,295959533,394421769,137350,SRX21337082,SRS18582315,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.69682,,0.12734,,0.78701,,0.67906,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75243,SRR25609907,SRX21337081,SRS18582315,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f22,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:22|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f22 Dm,f22 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F16-1_200821_D00404_0490_BCECNHANXX_CCTAAGAC-TCTCTCCG_L004_R1_001.fastq.gz 2524F16-2_200821_D00404_0490_BCECNHANXX_CCTAAGAC-TCTCTCCG_L005_R1_001.fastq.gz 2524F16-3_200821_D00404_0490_BCECNHANXX_CCTAAGAC-TCTCTCCG_L006_R1_001.fastq.gz,fastq fastq fastq,1390741848.0,27269448.0,2524F16 1 200821 D00404 0490 BCECNHANXX CCTAAGAC TCTCTCCG L004 R1 001.fastq.gz,0:51,A:355778515;C:333350291;G:307305870;T:394167030;N:140142,51,,,,355778515,333350291,307305870,394167030,140142,SRX21337081,SRS18582315,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.68271,,0.1658,,0.76623,,0.58608,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75244,SRR25609908,SRX21337080,SRS18582324,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f21,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:21|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f21 Dl,f21 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F14-1_200821_D00404_0490_BCECNHANXX_CCTAAGAC-CTAAGCCT_L004_R1_001.fastq.gz 2524F14-2_200821_D00404_0490_BCECNHANXX_CCTAAGAC-CTAAGCCT_L005_R1_001.fastq.gz 2524F14-3_200821_D00404_0490_BCECNHANXX_CCTAAGAC-CTAAGCCT_L006_R1_001.fastq.gz,fastq fastq fastq,1438629930.0,28208430.0,2524F14 1 200821 D00404 0490 BCECNHANXX CCTAAGAC CTAAGCCT L004 R1 001.fastq.gz,0:51,A:373059717;C:339824425;G:313418489;T:412183538;N:143761,51,,,,373059717,339824425,313418489,412183538,143761,SRX21337080,SRS18582324,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.67342,,0.21574,,0.76469,,0.6193,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75245,SRR25609909,SRX21337079,SRS18582324,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f21,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:21|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f21 Dp,f21 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F13-1_200821_D00404_0490_BCECNHANXX_CCTAAGAC-AAGGAGTA_L004_R1_001.fastq.gz 2524F13-2_200821_D00404_0490_BCECNHANXX_CCTAAGAC-AAGGAGTA_L005_R1_001.fastq.gz 2524F13-3_200821_D00404_0490_BCECNHANXX_CCTAAGAC-AAGGAGTA_L006_R1_001.fastq.gz,fastq fastq fastq,1366063407.0,26785557.0,2524F13 1 200821 D00404 0490 BCECNHANXX CCTAAGAC AAGGAGTA L004 R1 001.fastq.gz,0:51,A:362178882;C:314094030;G:296755145;T:392898841;N:136509,51,,,,362178882,314094030,296755145,392898841,136509,SRX21337079,SRS18582324,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.72509,,0.19957,,0.75306,,0.62708,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75246,SRR25609910,SRX21337078,SRS18582324,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f21,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:21|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f21 Dc,f21 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F12-1_200821_D00404_0490_BCECNHANXX_CCTAAGAC-ACTGCATA_L004_R1_001.fastq.gz 2524F12-2_200821_D00404_0490_BCECNHANXX_CCTAAGAC-ACTGCATA_L005_R1_001.fastq.gz 2524F12-3_200821_D00404_0490_BCECNHANXX_CCTAAGAC-ACTGCATA_L006_R1_001.fastq.gz,fastq fastq fastq,1408047729.0,27608779.0,2524F12 1 200821 D00404 0490 BCECNHANXX CCTAAGAC ACTGCATA L004 R1 001.fastq.gz,0:51,A:380296480;C:316922224;G:298608551;T:412080509;N:139965,51,,,,380296480,316922224,298608551,412080509,139965,SRX21337078,SRS18582324,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.71903,,0.16215,,0.78064,,0.70757,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75247,SRR25609911,SRX21337077,SRS18582325,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f36,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:36|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f36 Dl,f36 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F49-4_200908_D00404_0493_ACECY3ANXX_CTCTCTAC-CTCTCTAT_L007_R1_001.fastq.gz 2556F49-3_200908_D00404_0493_ACECY3ANXX_CTCTCTAC-CTCTCTAT_L006_R1_001.fastq.gz 2556F49-2_200908_D00404_0493_ACECY3ANXX_CTCTCTAC-CTCTCTAT_L005_R1_001.fastq.gz 2556F49-1_200908_D00404_0493_ACECY3ANXX_CTCTCTAC-CTCTCTAT_L004_R1_001.fastq.gz,fastq fastq fastq fastq,1055166999.0,20689549.0,2556F49 1 200908 D00404 0493 ACECY3ANXX CTCTCTAC CTCTCTAT L004 R1 001.fastq.gz,0:51,A:263524082;C:258526225;G:242273601;T:290778510;N:64581,51,,,,263524082,258526225,242273601,290778510,64581,SRX21337077,SRS18582325,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.72298,,0.17009,,0.75418,,0.53899,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75248,SRR25609912,SRX21337076,SRS18582325,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f36,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:36|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f36 Dp,f36 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F48-1_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TCTCTCCG_L004_R1_001.fastq.gz 2556F48-2_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TCTCTCCG_L005_R1_001.fastq.gz 2556F48-3_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TCTCTCCG_L006_R1_001.fastq.gz 2556F48-4_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TCTCTCCG_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1187440140.0,23283140.0,2556F48 1 200908 D00404 0493 ACECY3ANXX TAGGCATG TCTCTCCG L004 R1 001.fastq.gz,0:51,A:300590991;C:286990173;G:269833876;T:329952311;N:72789,51,,,,300590991,286990173,269833876,329952311,72789,SRX21337076,SRS18582325,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.72191,,0.18451,,0.7708,,0.59459,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75249,SRR25609913,SRX21337075,SRS18582325,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f36,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:36|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f36 Dc,f36 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F47-1_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CGTCTAAT_L004_R1_001.fastq.gz 2556F47-2_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CGTCTAAT_L005_R1_001.fastq.gz 2556F47-3_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CGTCTAAT_L006_R1_001.fastq.gz 2556F47-4_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CGTCTAAT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1056839034.0,20722334.0,2556F47 1 200908 D00404 0493 ACECY3ANXX TAGGCATG CGTCTAAT L004 R1 001.fastq.gz,0:51,A:273921750;C:250420125;G:235612441;T:296820106;N:64612,51,,,,273921750,250420125,235612441,296820106,64612,SRX21337075,SRS18582325,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.73416,,0.17257,,0.77638,,0.57796,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75250,SRR25609914,SRX21337074,SRS18582325,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f36,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:36|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f36 Dm,f36 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F44-1_200908_D00404_0493_ACECY3ANXX_TAGGCATG-ACTGCATA_L004_R1_001.fastq.gz 2556F44-2_200908_D00404_0493_ACECY3ANXX_TAGGCATG-ACTGCATA_L005_R1_001.fastq.gz 2556F44-3_200908_D00404_0493_ACECY3ANXX_TAGGCATG-ACTGCATA_L006_R1_001.fastq.gz 2556F44-4_200908_D00404_0493_ACECY3ANXX_TAGGCATG-ACTGCATA_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1073973453.0,21058303.0,2556F44 1 200908 D00404 0493 ACECY3ANXX TAGGCATG ACTGCATA L004 R1 001.fastq.gz,0:51,A:267145001;C:264800059;G:245237465;T:296725601;N:65327,51,,,,267145001,264800059,245237465,296725601,65327,SRX21337074,SRS18582325,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.69877,,0.1658,,0.74255,,0.53459,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75251,SRR25609915,SRX21337073,SRS18582323,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f35,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:35|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f35 Dp,f35 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F41-1_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CTCTCTAT_L004_R1_001.fastq.gz 2556F41-2_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CTCTCTAT_L005_R1_001.fastq.gz 2556F41-3_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CTCTCTAT_L006_R1_001.fastq.gz 2556F41-4_200908_D00404_0493_ACECY3ANXX_TAGGCATG-CTCTCTAT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1155296676.0,22652876.0,2556F41 1 200908 D00404 0493 ACECY3ANXX TAGGCATG CTCTCTAT L004 R1 001.fastq.gz,0:51,A:305708591;C:266923781;G:255185465;T:327408621;N:70218,51,,,,305708591,266923781,255185465,327408621,70218,SRX21337073,SRS18582323,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.76807,,0.20478,,0.74334,,0.57745,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75252,SRR25609916,SRX21337072,SRS18582323,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f35,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:35|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f35 Dc,f35 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F40-1_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TCTCTCCG_L004_R1_001.fastq.gz 2556F40-2_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TCTCTCCG_L005_R1_001.fastq.gz 2556F40-3_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TCTCTCCG_L006_R1_001.fastq.gz 2556F40-4_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TCTCTCCG_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1217738016.0,23877216.0,2556F40 1 200908 D00404 0493 ACECY3ANXX GGACTCCT TCTCTCCG L004 R1 001.fastq.gz,0:51,A:311937058;C:291873810;G:274741578;T:339111280;N:74290,51,,,,311937058,291873810,274741578,339111280,74290,SRX21337072,SRS18582323,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.74112,,0.15129,,0.75935,,0.60254,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75253,SRR25609917,SRX21337071,SRS18582324,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f21,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:21|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f21 Dm,f21 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F9-1_200821_D00404_0490_BCECNHANXX_CCTAAGAC-CTCTCTAT_L004_R1_001.fastq.gz 2524F9-2_200821_D00404_0490_BCECNHANXX_CCTAAGAC-CTCTCTAT_L005_R1_001.fastq.gz 2524F9-3_200821_D00404_0490_BCECNHANXX_CCTAAGAC-CTCTCTAT_L006_R1_001.fastq.gz,fastq fastq fastq,1383698901.0,27131351.0,2524F9 1 200821 D00404 0490 BCECNHANXX CCTAAGAC CTCTCTAT L004 R1 001.fastq.gz,0:51,A:369743407;C:315577107;G:297040256;T:401198028;N:140103,51,,,,369743407,315577107,297040256,401198028,140103,SRX21337071,SRS18582324,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.71583,,0.27236,,0.75485,,0.5799,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75254,SRR25609918,SRX21337070,SRS18582323,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f35,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:35|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f35 Dm,f35 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F37-1_200908_D00404_0493_ACECY3ANXX_GGACTCCT-AAGGAGTA_L004_R1_001.fastq.gz 2556F37-2_200908_D00404_0493_ACECY3ANXX_GGACTCCT-AAGGAGTA_L005_R1_001.fastq.gz 2556F37-3_200908_D00404_0493_ACECY3ANXX_GGACTCCT-AAGGAGTA_L006_R1_001.fastq.gz 2556F37-4_200908_D00404_0493_ACECY3ANXX_GGACTCCT-AAGGAGTA_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1317149460.0,25826460.0,2556F37 1 200908 D00404 0493 ACECY3ANXX GGACTCCT AAGGAGTA L004 R1 001.fastq.gz,0:51,A:343226479;C:309959829;G:294460178;T:369422401;N:80573,51,,,,343226479,309959829,294460178,369422401,80573,SRX21337070,SRS18582323,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.7526,,0.21197,,0.74454,,0.54896,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75255,SRR25609919,SRX21337069,SRS18582322,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f34,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:34|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f34 Dl,f34 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F35-1_200908_D00404_0493_ACECY3ANXX_GGACTCCT-GTAAGGAG_L004_R1_001.fastq.gz 2556F35-2_200908_D00404_0493_ACECY3ANXX_GGACTCCT-GTAAGGAG_L005_R1_001.fastq.gz 2556F35-3_200908_D00404_0493_ACECY3ANXX_GGACTCCT-GTAAGGAG_L006_R1_001.fastq.gz 2556F35-4_200908_D00404_0493_ACECY3ANXX_GGACTCCT-GTAAGGAG_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1101392430.0,21595930.0,2556F35 1 200908 D00404 0493 ACECY3ANXX GGACTCCT GTAAGGAG L004 R1 001.fastq.gz,0:51,A:270416566;C:275928451;G:256480404;T:298498966;N:68043,51,,,,270416566,275928451,256480404,298498966,68043,SRX21337069,SRS18582322,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.70387,,0.16319,,0.7668,,0.57622,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75256,SRR25609920,SRX21337068,SRS18582322,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f34,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:34|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f34 Dp,f34 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F34-1_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TATCCTCT_L004_R1_001.fastq.gz 2556F34-2_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TATCCTCT_L005_R1_001.fastq.gz 2556F34-3_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TATCCTCT_L006_R1_001.fastq.gz 2556F34-4_200908_D00404_0493_ACECY3ANXX_GGACTCCT-TATCCTCT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1115056350.0,21863850.0,2556F34 1 200908 D00404 0493 ACECY3ANXX GGACTCCT TATCCTCT L004 R1 001.fastq.gz,0:51,A:273769207;C:279307082;G:259988688;T:301923307;N:68066,51,,,,273769207,279307082,259988688,301923307,68066,SRX21337068,SRS18582322,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.71328,,0.16362,,0.77305,,0.60138,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75257,SRR25609921,SRX21337067,SRS18582322,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f34,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:34|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f34 Dc,f34 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F33-1_200908_D00404_0493_ACECY3ANXX_GGACTCCT-CTCTCTAT_L004_R1_001.fastq.gz 2556F33-2_200908_D00404_0493_ACECY3ANXX_GGACTCCT-CTCTCTAT_L005_R1_001.fastq.gz 2556F33-3_200908_D00404_0493_ACECY3ANXX_GGACTCCT-CTCTCTAT_L006_R1_001.fastq.gz 2556F33-4_200908_D00404_0493_ACECY3ANXX_GGACTCCT-CTCTCTAT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1265440917.0,24812567.0,2556F33 1 200908 D00404 0493 ACECY3ANXX GGACTCCT CTCTCTAT L004 R1 001.fastq.gz,0:51,A:332463888;C:294728187;G:281678767;T:356490805;N:79270,51,,,,332463888,294728187,281678767,356490805,79270,SRX21337067,SRS18582322,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.76652,,0.17639,,0.75645,,0.61581,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75258,SRR25609922,SRX21337066,SRS18582322,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f34,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:34|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f34 Dm,f34 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F30-1_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-CTAAGCCT_L004_R1_001.fastq.gz 2556F30-2_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-CTAAGCCT_L005_R1_001.fastq.gz 2556F30-3_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-CTAAGCCT_L006_R1_001.fastq.gz 2556F30-4_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-CTAAGCCT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1299731532.0,25484932.0,2556F30 1 200908 D00404 0493 ACECY3ANXX TCCTGAGC CTAAGCCT L004 R1 001.fastq.gz,0:51,A:331824329;C:312293000;G:291737763;T:363797530;N:78910,51,,,,331824329,312293000,291737763,363797530,78910,SRX21337066,SRS18582322,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.71649,,0.17761,,0.73235,,0.55221,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75259,SRR25609923,SRX21337065,SRS18582321,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f33,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:33|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f33 Dp,f33 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F27-1_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-GTAAGGAG_L004_R1_001.fastq.gz 2556F27-2_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-GTAAGGAG_L005_R1_001.fastq.gz 2556F27-3_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-GTAAGGAG_L006_R1_001.fastq.gz 2556F27-4_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-GTAAGGAG_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1191919215.0,23370965.0,2556F27 1 200908 D00404 0493 ACECY3ANXX TCCTGAGC GTAAGGAG L004 R1 001.fastq.gz,0:51,A:316991438;C:273983938;G:261204926;T:339665710;N:73203,51,,,,316991438,273983938,261204926,339665710,73203,SRX21337065,SRS18582321,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.7688,,0.20313,,0.73825,,0.56206,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75260,SRR25609924,SRX21337064,SRS18582321,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f33,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:33|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f33 Dc,f33 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F26-1_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-TATCCTCT_L004_R1_001.fastq.gz 2556F26-2_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-TATCCTCT_L005_R1_001.fastq.gz 2556F26-3_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-TATCCTCT_L006_R1_001.fastq.gz 2556F26-4_200908_D00404_0493_ACECY3ANXX_TCCTGAGC-TATCCTCT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1188852942.0,23310842.0,2556F26 1 200908 D00404 0493 ACECY3ANXX TCCTGAGC TATCCTCT L004 R1 001.fastq.gz,0:51,A:299022929;C:289871050;G:268968275;T:330917526;N:73162,51,,,,299022929,289871050,268968275,330917526,73162,SRX21337064,SRS18582321,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.70669,,0.13246,,0.76079,,0.60593,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75261,SRR25609925,SRX21337063,SRS18582321,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f33,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:33|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f33 Dm,f33 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F23-1_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-CGTCTAAT_L004_R1_001.fastq.gz 2556F23-2_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-CGTCTAAT_L005_R1_001.fastq.gz 2556F23-3_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-CGTCTAAT_L006_R1_001.fastq.gz 2556F23-4_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-CGTCTAAT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1166658711.0,22875661.0,2556F23 1 200908 D00404 0493 ACECY3ANXX AGGCAGAA CGTCTAAT L004 R1 001.fastq.gz,0:51,A:289696778;C:288748081;G:266467277;T:321675641;N:70934,51,,,,289696778,288748081,266467277,321675641,70934,SRX21337063,SRS18582321,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.69386,,0.15766,,0.74239,,0.53207,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75262,SRR25609926,SRX21337062,SRS18582320,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f32,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:32|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f32 Dl,f32 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F21-1_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-AAGGAGTA_L004_R1_001.fastq.gz 2556F21-2_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-AAGGAGTA_L005_R1_001.fastq.gz 2556F21-3_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-AAGGAGTA_L006_R1_001.fastq.gz 2556F21-4_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-AAGGAGTA_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1213725693.0,23798543.0,2556F21 1 200908 D00404 0493 ACECY3ANXX AGGCAGAA AAGGAGTA L004 R1 001.fastq.gz,0:51,A:310132207;C:291776453;G:273787346;T:337954066;N:75621,51,,,,310132207,291776453,273787346,337954066,75621,SRX21337062,SRS18582320,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.73268,,0.18782,,0.73722,,0.54739,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75263,SRR25609927,SRX21337061,SRS18582320,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f32,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:32|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f32 Dp,f32 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F20-1_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-ACTGCATA_L004_R1_001.fastq.gz 2556F20-2_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-ACTGCATA_L005_R1_001.fastq.gz 2556F20-3_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-ACTGCATA_L006_R1_001.fastq.gz 2556F20-4_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-ACTGCATA_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1072803768.0,21035368.0,2556F20 1 200908 D00404 0493 ACECY3ANXX AGGCAGAA ACTGCATA L004 R1 001.fastq.gz,0:51,A:268037522;C:263421638;G:244415486;T:296862785;N:66337,51,,,,268037522,263421638,244415486,296862785,66337,SRX21337061,SRS18582320,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.70554,,0.17272,,0.7415,,0.54408,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75264,SRR25609928,SRX21337060,SRS18582314,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f20,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:20|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f20 Dl,f20 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F7-1_200821_D00404_0490_BCECNHANXX_ACTGAGCG-CGTCTAAT_L004_R1_001.fastq.gz 2524F7-2_200821_D00404_0490_BCECNHANXX_ACTGAGCG-CGTCTAAT_L005_R1_001.fastq.gz 2524F7-3_200821_D00404_0490_BCECNHANXX_ACTGAGCG-CGTCTAAT_L006_R1_001.fastq.gz,fastq fastq fastq,1026815793.0,20133643.0,2524F7 1 200821 D00404 0490 BCECNHANXX ACTGAGCG CGTCTAAT L004 R1 001.fastq.gz,0:51,A:260601262;C:248517077;G:227743539;T:289861765;N:92150,51,,,,260601262,248517077,227743539,289861765,92150,SRX21337060,SRS18582314,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.66007,,0.18828,,0.76518,,0.59914,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75265,SRR25609929,SRX21337059,SRS18582320,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f32,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:32|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f32 Dc,f32 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F19-1_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-GTAAGGAG_L004_R1_001.fastq.gz 2556F19-2_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-GTAAGGAG_L005_R1_001.fastq.gz 2556F19-3_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-GTAAGGAG_L006_R1_001.fastq.gz 2556F19-4_200908_D00404_0493_ACECY3ANXX_AGGCAGAA-GTAAGGAG_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1252180101.0,24552551.0,2556F19 1 200908 D00404 0493 ACECY3ANXX AGGCAGAA GTAAGGAG L004 R1 001.fastq.gz,0:51,A:323343132;C:298020101;G:281347786;T:349391791;N:77291,51,,,,323343132,298020101,281347786,349391791,77291,SRX21337059,SRS18582320,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.74924,,0.16347,,0.75517,,0.61323,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75266,SRR25609930,SRX21337058,SRS18582320,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f32,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:32|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f32 Dm,f32 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F16-1_200908_D00404_0493_ACECY3ANXX_CGTACTAG-TCTCTCCG_L004_R1_001.fastq.gz 2556F16-2_200908_D00404_0493_ACECY3ANXX_CGTACTAG-TCTCTCCG_L005_R1_001.fastq.gz 2556F16-3_200908_D00404_0493_ACECY3ANXX_CGTACTAG-TCTCTCCG_L006_R1_001.fastq.gz 2556F16-4_200908_D00404_0493_ACECY3ANXX_CGTACTAG-TCTCTCCG_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1228702965.0,24092215.0,2556F16 1 200908 D00404 0493 ACECY3ANXX CGTACTAG TCTCTCCG L004 R1 001.fastq.gz,0:51,A:322048989;C:286945823;G:270094494;T:349537500;N:76159,51,,,,322048989,286945823,270094494,349537500,76159,SRX21337058,SRS18582320,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.73366,,0.20938,,0.74923,,0.55506,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75267,SRR25609931,SRX21337057,SRS18582319,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f31,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:31|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f31 Dl,f31 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F14-1_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTAAGCCT_L004_R1_001.fastq.gz 2556F14-2_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTAAGCCT_L005_R1_001.fastq.gz 2556F14-3_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTAAGCCT_L006_R1_001.fastq.gz 2556F14-4_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTAAGCCT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1029444792.0,20185192.0,2556F14 1 200908 D00404 0493 ACECY3ANXX CGTACTAG CTAAGCCT L004 R1 001.fastq.gz,0:51,A:264924143;C:245801046;G:232641783;T:286017298;N:60522,51,,,,264924143,245801046,232641783,286017298,60522,SRX21337057,SRS18582319,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.71324,,0.21005,,0.76654,,0.57247,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75268,SRR25609932,SRX21337056,SRS18582319,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f31,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:31|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f31 Dp,f31 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F13-1_200908_D00404_0493_ACECY3ANXX_CGTACTAG-AAGGAGTA_L004_R1_001.fastq.gz 2556F13-2_200908_D00404_0493_ACECY3ANXX_CGTACTAG-AAGGAGTA_L005_R1_001.fastq.gz 2556F13-3_200908_D00404_0493_ACECY3ANXX_CGTACTAG-AAGGAGTA_L006_R1_001.fastq.gz 2556F13-4_200908_D00404_0493_ACECY3ANXX_CGTACTAG-AAGGAGTA_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1183833777.0,23212427.0,2556F13 1 200908 D00404 0493 ACECY3ANXX CGTACTAG AAGGAGTA L004 R1 001.fastq.gz,0:51,A:312792177;C:274201924;G:263027486;T:333739944;N:72246,51,,,,312792177,274201924,263027486,333739944,72246,SRX21337056,SRS18582319,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.77872,,0.2141,,0.74905,,0.56662,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75269,SRR25609933,SRX21337055,SRS18582319,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f31,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:31|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f31 Dc,f31 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F12-1_200908_D00404_0493_ACECY3ANXX_CGTACTAG-ACTGCATA_L004_R1_001.fastq.gz 2556F12-2_200908_D00404_0493_ACECY3ANXX_CGTACTAG-ACTGCATA_L005_R1_001.fastq.gz 2556F12-3_200908_D00404_0493_ACECY3ANXX_CGTACTAG-ACTGCATA_L006_R1_001.fastq.gz 2556F12-4_200908_D00404_0493_ACECY3ANXX_CGTACTAG-ACTGCATA_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1143161022.0,22414922.0,2556F12 1 200908 D00404 0493 ACECY3ANXX CGTACTAG ACTGCATA L004 R1 001.fastq.gz,0:51,A:295139379;C:271535804;G:258007124;T:318407781;N:70934,51,,,,295139379,271535804,258007124,318407781,70934,SRX21337055,SRS18582319,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.75103,,0.17265,,0.77169,,0.50242,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75270,SRR25609934,SRX21337054,SRS18582319,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f31,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:31|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f31 Dm,f31 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F9-1_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTCTCTAT_L004_R1_001.fastq.gz 2556F9-2_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTCTCTAT_L005_R1_001.fastq.gz 2556F9-3_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTCTCTAT_L006_R1_001.fastq.gz 2556F9-4_200908_D00404_0493_ACECY3ANXX_CGTACTAG-CTCTCTAT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1191978630.0,23372130.0,2556F9 1 200908 D00404 0493 ACECY3ANXX CGTACTAG CTCTCTAT L004 R1 001.fastq.gz,0:51,A:311856874;C:278677077;G:266115474;T:335256862;N:72343,51,,,,311856874,278677077,266115474,335256862,72343,SRX21337054,SRS18582319,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.76588,,0.20741,,0.74347,,0.50222,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75271,SRR25609935,SRX21337053,SRS18582318,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f30,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:30|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f30 Dl,f30 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F7-4_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CGTCTAAT_L007_R1_001.fastq.gz 2556F7-3_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CGTCTAAT_L006_R1_001.fastq.gz 2556F7-2_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CGTCTAAT_L005_R1_001.fastq.gz 2556F7-1_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CGTCTAAT_L004_R1_001.fastq.gz,fastq fastq fastq fastq,1167263010.0,22887510.0,2556F7 1 200908 D00404 0493 ACECY3ANXX TAAGGCGA CGTCTAAT L004 R1 001.fastq.gz,0:51,A:309051299;C:269678911;G:255300774;T:333160957;N:71069,51,,,,309051299,269678911,255300774,333160957,71069,SRX21337053,SRS18582318,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.74671,,0.23651,,0.7345,,0.55689,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75272,SRR25609936,SRX21337052,SRS18582318,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f30,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:30|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f30 Dp,f30 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F6-1_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CTAAGCCT_L004_R1_001.fastq.gz 2556F6-2_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CTAAGCCT_L005_R1_001.fastq.gz 2556F6-3_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CTAAGCCT_L006_R1_001.fastq.gz 2556F6-4_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-CTAAGCCT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,730790985.0,14329235.0,2556F6 1 200908 D00404 0493 ACECY3ANXX TAAGGCGA CTAAGCCT L004 R1 001.fastq.gz,0:51,A:191033739;C:172134643;G:162119469;T:205460903;N:42231,51,,,,191033739,172134643,162119469,205460903,42231,SRX21337052,SRS18582318,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.72822,,0.22363,,0.7683,,0.54751,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75273,SRR25609937,SRX21337051,SRS18582318,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f30,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:30|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f30 Dc,f30 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F5-1_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-AAGGAGTA_L004_R1_001.fastq.gz 2556F5-2_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-AAGGAGTA_L005_R1_001.fastq.gz 2556F5-3_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-AAGGAGTA_L006_R1_001.fastq.gz 2556F5-4_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-AAGGAGTA_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1241901561.0,24351011.0,2556F5 1 200908 D00404 0493 ACECY3ANXX TAAGGCGA AAGGAGTA L004 R1 001.fastq.gz,0:51,A:326238443;C:288886966;G:274508143;T:352191293;N:76716,51,,,,326238443,288886966,274508143,352191293,76716,SRX21337051,SRS18582318,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.72948,,0.21168,,0.76075,,0.5195,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75274,SRR25609938,SRX21337050,SRS18582318,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f30,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:30|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f30 Dm,f30 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2556F2-1_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-TATCCTCT_L004_R1_001.fastq.gz 2556F2-2_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-TATCCTCT_L005_R1_001.fastq.gz 2556F2-3_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-TATCCTCT_L006_R1_001.fastq.gz 2556F2-4_200908_D00404_0493_ACECY3ANXX_TAAGGCGA-TATCCTCT_L007_R1_001.fastq.gz,fastq fastq fastq fastq,1156225284.0,22671084.0,2556F2 1 200908 D00404 0493 ACECY3ANXX TAAGGCGA TATCCTCT L004 R1 001.fastq.gz,0:51,A:310810127;C:261969062;G:247481781;T:335891118;N:73196,51,,,,310810127,261969062,247481781,335891118,73196,SRX21337050,SRS18582318,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.73161,,0.25224,,0.74617,,0.54265,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75275,SRR25609939,SRX21337049,SRS18582314,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f20,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:20|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f20 Dp,f20 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F6-3_200821_D00404_0490_BCECNHANXX_ACTCGCTA-CTAAGCCT_L006_R1_001.fastq.gz 2524F6-2_200821_D00404_0490_BCECNHANXX_ACTCGCTA-CTAAGCCT_L005_R1_001.fastq.gz 2524F6-1_200821_D00404_0490_BCECNHANXX_ACTCGCTA-CTAAGCCT_L004_R1_001.fastq.gz,fastq fastq fastq,1345965786.0,26391486.0,2524F6 1 200821 D00404 0490 BCECNHANXX ACTCGCTA CTAAGCCT L004 R1 001.fastq.gz,0:51,A:351448846;C:315636670;G:296052222;T:382693173;N:134875,51,,,,351448846,315636670,296052222,382693173,134875,SRX21337049,SRS18582314,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.72109,,0.17887,,0.75552,,0.61186,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75276,SRR25609940,SRX21337048,SRS18582317,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f24,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:24|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f24 Dl,f24 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F35-1_200821_D00404_0490_BCECNHANXX_TCGACGTC-GTAAGGAG_L004_R1_001.fastq.gz 2524F35-2_200821_D00404_0490_BCECNHANXX_TCGACGTC-GTAAGGAG_L005_R1_001.fastq.gz 2524F35-3_200821_D00404_0490_BCECNHANXX_TCGACGTC-GTAAGGAG_L006_R1_001.fastq.gz,fastq fastq fastq,1299505296.0,25480496.0,2524F35 1 200821 D00404 0490 BCECNHANXX TCGACGTC GTAAGGAG L004 R1 001.fastq.gz,0:51,A:334254701;C:310229900;G:284636696;T:370252708;N:131291,51,,,,334254701,310229900,284636696,370252708,131291,SRX21337048,SRS18582317,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.67172,,0.18414,,0.75948,,0.59378,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75277,SRR25609941,SRX21337047,SRS18582317,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f24,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:24|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f24 Dp,f24 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F34-1_200821_D00404_0490_BCECNHANXX_TCGACGTC-TATCCTCT_L004_R1_001.fastq.gz 2524F34-2_200821_D00404_0490_BCECNHANXX_TCGACGTC-TATCCTCT_L005_R1_001.fastq.gz 2524F34-3_200821_D00404_0490_BCECNHANXX_TCGACGTC-TATCCTCT_L006_R1_001.fastq.gz,fastq fastq fastq,1425394716.0,27948916.0,2524F34 1 200821 D00404 0490 BCECNHANXX TCGACGTC TATCCTCT L004 R1 001.fastq.gz,0:51,A:361837350;C:344282267;G:312480811;T:406651814;N:142474,51,,,,361837350,344282267,312480811,406651814,142474,SRX21337047,SRS18582317,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.64429,,0.17561,,0.75438,,0.55915,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75278,SRR25609942,SRX21337046,SRS18582317,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f24,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:24|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f24 Dc,f24 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F33-1_200821_D00404_0490_BCECNHANXX_TCGACGTC-CTCTCTAT_L004_R1_001.fastq.gz 2524F33-2_200821_D00404_0490_BCECNHANXX_TCGACGTC-CTCTCTAT_L005_R1_001.fastq.gz 2524F33-3_200821_D00404_0490_BCECNHANXX_TCGACGTC-CTCTCTAT_L006_R1_001.fastq.gz,fastq fastq fastq,1326762552.0,26014952.0,2524F33 1 200821 D00404 0490 BCECNHANXX TCGACGTC CTCTCTAT L004 R1 001.fastq.gz,0:51,A:340637915;C:317128153;G:291366840;T:377494272;N:135372,51,,,,340637915,317128153,291366840,377494272,135372,SRX21337046,SRS18582317,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.67552,,0.14592,,0.78196,,0.67118,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75279,SRR25609943,SRX21337045,SRS18582317,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f24,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:24|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f24 Dm,f24 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F30-1_200821_D00404_0490_BCECNHANXX_TGCAGCTA-CTAAGCCT_L004_R1_001.fastq.gz 2524F30-2_200821_D00404_0490_BCECNHANXX_TGCAGCTA-CTAAGCCT_L005_R1_001.fastq.gz 2524F30-3_200821_D00404_0490_BCECNHANXX_TGCAGCTA-CTAAGCCT_L006_R1_001.fastq.gz,fastq fastq fastq,1300641525.0,25502775.0,2524F30 1 200821 D00404 0490 BCECNHANXX TGCAGCTA CTAAGCCT L004 R1 001.fastq.gz,0:51,A:337878510;C:306753836;G:284047898;T:371833121;N:128160,51,,,,337878510,306753836,284047898,371833121,128160,SRX21337045,SRS18582317,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.68639,,0.19082,,0.75582,,0.59655,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75280,SRR25609944,SRX21337044,SRS18582316,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f23,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:23|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f23 Dl,f23 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F28-1_200821_D00404_0490_BCECNHANXX_TGCAGCTA-ACTGCATA_L004_R1_001.fastq.gz 2524F28-2_200821_D00404_0490_BCECNHANXX_TGCAGCTA-ACTGCATA_L005_R1_001.fastq.gz 2524F28-3_200821_D00404_0490_BCECNHANXX_TGCAGCTA-ACTGCATA_L006_R1_001.fastq.gz,fastq fastq fastq,657791472.0,12897872.0,2524F28 1 200821 D00404 0490 BCECNHANXX TGCAGCTA ACTGCATA L004 R1 001.fastq.gz,0:51,A:167368979;C:158769356;G:150895386;T:180703633;N:54118,51,,,,167368979,158769356,150895386,180703633,54118,SRX21337044,SRS18582316,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.75209,,0.15722,,0.78476,,0.56215,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75281,SRR25609945,SRX21337043,SRS18582316,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f23,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:23|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f23 Dp,f23 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F27-1_200821_D00404_0490_BCECNHANXX_TGCAGCTA-GTAAGGAG_L004_R1_001.fastq.gz 2524F27-2_200821_D00404_0490_BCECNHANXX_TGCAGCTA-GTAAGGAG_L005_R1_001.fastq.gz 2524F27-3_200821_D00404_0490_BCECNHANXX_TGCAGCTA-GTAAGGAG_L006_R1_001.fastq.gz,fastq fastq fastq,1331124837.0,26100487.0,2524F27 1 200821 D00404 0490 BCECNHANXX TGCAGCTA GTAAGGAG L004 R1 001.fastq.gz,0:51,A:343365280;C:316530308;G:292327065;T:378768714;N:133470,51,,,,343365280,316530308,292327065,378768714,133470,SRX21337043,SRS18582316,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.68947,,0.19801,,0.75243,,0.58902,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75282,SRR25609946,SRX21337042,SRS18582316,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f23,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:23|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f23 Dc,f23 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F26-1_200821_D00404_0490_BCECNHANXX_TGCAGCTA-TATCCTCT_L004_R1_001.fastq.gz 2524F26-2_200821_D00404_0490_BCECNHANXX_TGCAGCTA-TATCCTCT_L005_R1_001.fastq.gz 2524F26-3_200821_D00404_0490_BCECNHANXX_TGCAGCTA-TATCCTCT_L006_R1_001.fastq.gz,fastq fastq fastq,1357438593.0,26616443.0,2524F26 1 200821 D00404 0490 BCECNHANXX TGCAGCTA TATCCTCT L004 R1 001.fastq.gz,0:51,A:350814963;C:322137968;G:296076522;T:388274118;N:135022,51,,,,350814963,322137968,296076522,388274118,135022,SRX21337042,SRS18582316,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.67672,,0.12184,,0.77684,,0.67617,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75283,SRR25609947,SRX21337041,SRS18582316,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f23,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:23|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f23 Dm,f23 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F23-1_200821_D00404_0490_BCECNHANXX_CGATCAGT-CGTCTAAT_L004_R1_001.fastq.gz 2524F23-2_200821_D00404_0490_BCECNHANXX_CGATCAGT-CGTCTAAT_L005_R1_001.fastq.gz 2524F23-3_200821_D00404_0490_BCECNHANXX_CGATCAGT-CGTCTAAT_L006_R1_001.fastq.gz,fastq fastq fastq,1310635689.0,25698739.0,2524F23 1 200821 D00404 0490 BCECNHANXX CGATCAGT CGTCTAAT L004 R1 001.fastq.gz,0:51,A:329845205;C:319621549;G:290294319;T:370745436;N:129180,51,,,,329845205,319621549,290294319,370745436,129180,SRX21337041,SRS18582316,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.65504,,0.15018,,0.76441,,0.55473,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75284,SRR25609948,SRX21337040,SRS18582315,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f22,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:22|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f22 Dl,f22 Dl,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F21-1_200821_D00404_0490_BCECNHANXX_CGATCAGT-AAGGAGTA_L004_R1_001.fastq.gz 2524F21-2_200821_D00404_0490_BCECNHANXX_CGATCAGT-AAGGAGTA_L005_R1_001.fastq.gz 2524F21-3_200821_D00404_0490_BCECNHANXX_CGATCAGT-AAGGAGTA_L006_R1_001.fastq.gz,fastq fastq fastq,1367103399.0,26805949.0,2524F21 1 200821 D00404 0490 BCECNHANXX CGATCAGT AAGGAGTA L004 R1 001.fastq.gz,0:51,A:348496475;C:329219887;G:304682170;T:384569914;N:134953,51,,,,348496475,329219887,304682170,384569914,134953,SRX21337040,SRS18582315,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.69234,,0.1751,,0.75976,,0.59565,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75285,SRR25609949,SRX21337039,SRS18582315,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f22,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:22|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f22 Dp,f22 Dp,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F20-1_200821_D00404_0490_BCECNHANXX_CGATCAGT-ACTGCATA_L004_R1_001.fastq.gz 2524F20-2_200821_D00404_0490_BCECNHANXX_CGATCAGT-ACTGCATA_L005_R1_001.fastq.gz 2524F20-3_200821_D00404_0490_BCECNHANXX_CGATCAGT-ACTGCATA_L006_R1_001.fastq.gz,fastq fastq fastq,1391179938.0,27278038.0,2524F20 1 200821 D00404 0490 BCECNHANXX CGATCAGT ACTGCATA L004 R1 001.fastq.gz,0:51,A:358063871;C:331395885;G:307106587;T:394476102;N:137493,51,,,,358063871,331395885,307106587,394476102,137493,SRX21337039,SRS18582315,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.70059,,0.17705,,0.77565,,0.58748,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75286,SRR25609950,SRX21337038,SRS18582314,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f20,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:20|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f20 Dc,f20 Dc,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F5-1_200821_D00404_0490_BCECNHANXX_ACTGAGCG-AAGGAGTA_L004_R1_001.fastq.gz 2524F5-2_200821_D00404_0490_BCECNHANXX_ACTGAGCG-AAGGAGTA_L005_R1_001.fastq.gz 2524F5-3_200821_D00404_0490_BCECNHANXX_ACTGAGCG-AAGGAGTA_L006_R1_001.fastq.gz,fastq fastq fastq,1286333577.0,25222227.0,2524F5 1 200821 D00404 0490 BCECNHANXX ACTGAGCG AAGGAGTA L004 R1 001.fastq.gz,0:51,A:325258798;C:312379944;G:283846256;T:364724064;N:124515,51,,,,325258798,312379944,283846256,364724064,124515,SRX21337038,SRS18582314,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.65236,,0.1239,,0.78612,,0.66212,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System
75287,SRR25609951,SRX21337037,SRS18582314,SRP454447,PRJNA964500,Danio rerio telencephalon sequencing,PRJNA964500,Whole Genome Sequencing,We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio.,,,,,f20,,strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:20|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult telencephalon,f20 Dm,f20 Dm,RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5,,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP454447,,,2524F2-1_200821_D00404_0490_BCECNHANXX_ACTGAGCG-TATCCTCT_L004_R1_001.fastq.gz 2524F2-2_200821_D00404_0490_BCECNHANXX_ACTGAGCG-TATCCTCT_L005_R1_001.fastq.gz 2524F2-3_200821_D00404_0490_BCECNHANXX_ACTGAGCG-TATCCTCT_L006_R1_001.fastq.gz,fastq fastq fastq,1299221379.0,25474929.0,2524F2 1 200821 D00404 0490 BCECNHANXX ACTGAGCG TATCCTCT L004 R1 001.fastq.gz,0:51,A:331380237;C:312514649;G:287027828;T:368171190;N:127475,51,,,,331380237,312514649,287027828,368171190,127475,SRX21337037,SRS18582314,SRA1690795,Friedrich Miescher Institute for Biomedical Research|Neurobiology,Friedrich Miescher Institute for Biomedical Research,1,0.67545,,0.15898,,0.75672,,0.59546,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Switzerland,2023-08-11,Adult,Adult,Brain,Nervous System