rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
95,DRR050167,DRX045209,DRS025834,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 3,SAMD00044057,,sample name:ES1 EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044057,DRX045209,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>105</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044057,,,,371748120.0,3469843.0,DRR050167,0:107.14,A:107190409;C:79475572;G:83520360;T:101561779;N:0,107,,,,107190409,79475572,83520360,101561779,0,DRX045209,DRS025834,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.81026,,0.26715,,0.86953,,0.52321,,51,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
96,DRR050166,DRX045208,DRS025833,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 2,SAMD00044056,,sample name:ES1 EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044056,DRX045208,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>128</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044056,,,,425549011.0,3275261.0,DRR050166,0:129.93,A:126640704;C:86415371;G:90822163;T:121670773;N:0,129,,,,126640704,86415371,90822163,121670773,0,DRX045208,DRS025833,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80223,,0.31429,,0.85861,,0.5272,,57,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
97,DRR050165,DRX045207,DRS025832,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 1,SAMD00044055,,sample name:ES1 EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044055,DRX045207,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>147</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044055,,,,584599765.0,3941083.0,DRR050165,0:148.33,A:164329030;C:129885620;G:136727379;T:153657736;N:0,148,,,,164329030,129885620,136727379,153657736,0,DRX045207,DRS025832,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.83769,,0.25395,,0.83116,,0.52784,,185,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
98,DRR050164,DRX045206,DRS025831,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 3,SAMD00044054,,sample name:EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044054,DRX045206,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>88</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044054,,,,343014114.0,3827762.0,DRR050164,0:89.61,A:99421434;C:73070267;G:77738821;T:92783592;N:0,89,,,,99421434,73070267,77738821,92783592,0,DRX045206,DRS025831,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.78953,,0.25529,,0.87367,,0.52148,,24,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
99,DRR050163,DRX045205,DRS025830,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 2,SAMD00044053,,sample name:EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044053,DRX045205,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>137</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044053,,,,533069427.0,3824140.0,DRR050163,0:139.40,A:152608173;C:113928273;G:120051739;T:146481242;N:0,139,,,,152608173,113928273,120051739,146481242,0,DRX045205,DRS025830,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80412,,0.26768,,0.85338,,0.52255,,245,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
100,DRR050162,DRX045204,DRS025829,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 1,SAMD00044052,,sample name:EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044052,DRX045204,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>113</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044052,,,,478262965.0,4224064.0,DRR050162,0:113.22,A:136348264;C:104872341;G:113114502;T:123927858;N:0,113,,,,136348264,104872341,113114502,123927858,0,DRX045204,DRS025829,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.86947,,0.29839,,0.83317,,0.51453,,80,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
1343,ERR1821990,ERX1884482,ERS1343316,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 7,SAMEA4431867,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:16Z|INSDC status:public|Submitter Id:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#96,DN465656V:H12,Illumina sequencing of library DN465656V:H12  constructed from sample accession ERS1343316 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GTCTTGGC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#96.cram,cram,345517950.0,2303453.0,SC RUN 21115 7#96,0:75 1:75,A:91753293;C:80579294;G:80049976;T:93111505;N:23882,75,75,,,91753293,80579294,80049976,93111505,23882,ERX1884482,ERS1343316,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9565,0.95935,0.12705,0.1217,0.68665,0.68745,0.48707,0.48858,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1344,ERR1821989,ERX1884481,ERS1343315,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 11,SAMEA4431866,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#95,DN465656V:G12,Illumina sequencing of library DN465656V:G12  constructed from sample accession ERS1343315 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GATTCATC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#95.cram,cram,364024650.0,2426831.0,SC RUN 21115 7#95,0:75 1:75,A:95916965;C:85606514;G:85201716;T:97272921;N:26534,75,75,,,95916965,85606514,85201716,97272921,26534,ERX1884481,ERS1343315,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95308,0.9573,0.12802,0.12464,0.68114,0.6817,0.4667,0.47686,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1345,ERR1821988,ERX1884480,ERS1343314,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 10,SAMEA4431865,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#94,DN465656V:F12,Illumina sequencing of library DN465656V:F12  constructed from sample accession ERS1343314 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GCTAACTC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#94.cram,cram,309343200.0,2062288.0,SC RUN 21115 7#94,0:75 1:75,A:81870720;C:72361549;G:72008899;T:83081311;N:20721,75,75,,,81870720,72361549,72008899,83081311,20721,ERX1884480,ERS1343314,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95466,0.95821,0.12781,0.12327,0.68316,0.6827,0.47554,0.473,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1346,ERR1821987,ERX1884479,ERS1343313,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 8,SAMEA4431864,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:14Z|INSDC status:public|Submitter Id:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#93,DN465656V:E12,Illumina sequencing of library DN465656V:E12  constructed from sample accession ERS1343313 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GCACTGTC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#93.cram,cram,351364950.0,2342433.0,SC RUN 21115 7#93,0:75 1:75,A:90109745;C:84916907;G:84829295;T:91484844;N:24159,75,75,,,90109745,84916907,84829295,91484844,24159,ERX1884479,ERS1343313,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96367,0.96715,0.12608,0.12301,0.69122,0.69199,0.4811,0.47937,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1349,ERR1821984,ERX1884476,ERS1343310,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 23,SAMEA4431861,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:11Z|INSDC status:public|Submitter Id:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#90,DN465656V:B12,Illumina sequencing of library DN465656V:B12  constructed from sample accession ERS1343310 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GCAATCCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#90.cram,cram,327632850.0,2184219.0,SC RUN 21115 7#90,0:75 1:75,A:85924891;C:77302972;G:77056818;T:87325377;N:22792,75,75,,,85924891,77302972,77056818,87325377,22792,ERX1884476,ERS1343310,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95516,0.95885,0.12908,0.12567,0.68024,0.68073,0.4789,0.46603,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1351,ERR1821982,ERX1884474,ERS1343308,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 24,SAMEA4431859,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:10Z|INSDC status:public|Submitter Id:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#88,DN465656V:H11,Illumina sequencing of library DN465656V:H11  constructed from sample accession ERS1343308 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GATAGAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#88.cram,cram,341873100.0,2279154.0,SC RUN 21115 7#88,0:75 1:75,A:90890336;C:79583107;G:79122986;T:92253133;N:23538,75,75,,,90890336,79583107,79122986,92253133,23538,ERX1884474,ERS1343308,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95206,0.95482,0.13868,0.13387,0.67574,0.67608,0.4731,0.47619,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1353,ERR1821980,ERX1884472,ERS1343306,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 2,SAMEA4431857,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:08Z|INSDC status:public|Submitter Id:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#86,DN465656V:F11,Illumina sequencing of library DN465656V:F11  constructed from sample accession ERS1343306 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GTTGTCGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#86.cram,cram,298295250.0,1988635.0,SC RUN 21115 7#86,0:75 1:75,A:78320474;C:70341391;G:69945735;T:79667042;N:20608,75,75,,,78320474,70341391,69945735,79667042,20608,ERX1884472,ERS1343306,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95656,0.96027,0.12066,0.11593,0.68454,0.68669,0.47075,0.47796,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1354,ERR1821979,ERX1884471,ERS1343305,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 16,SAMEA4431856,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:07Z|INSDC status:public|Submitter Id:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#85,DN465656V:E11,Illumina sequencing of library DN465656V:E11  constructed from sample accession ERS1343305 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GAGGATGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#85.cram,cram,359866950.0,2399113.0,SC RUN 21115 7#85,0:75 1:75,A:93719620;C:85604760;G:85368955;T:95149504;N:24111,75,75,,,93719620,85604760,85368955,95149504,24111,ERX1884471,ERS1343305,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9588,0.96228,0.12915,0.12531,0.69877,0.69994,0.48415,0.48329,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1355,ERR1821978,ERX1884470,ERS1343304,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 2,SAMEA4431855,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431855|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:06Z|INSDC status:public|Submitter Id:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#84,DN465656V:D11,Illumina sequencing of library DN465656V:D11  constructed from sample accession ERS1343304 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GTAAGGTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#84.cram,cram,343587900.0,2290586.0,SC RUN 21115 7#84,0:75 1:75,A:88614226;C:82509443;G:82384006;T:90057117;N:23108,75,75,,,88614226,82509443,82384006,90057117,23108,ERX1884470,ERS1343304,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95996,0.9639,0.12325,0.11918,0.6872,0.68838,0.47479,0.4727,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1357,ERR1821976,ERX1884468,ERS1343302,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 12,SAMEA4431853,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:05Z|INSDC status:public|Submitter Id:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#82,DN465656V:B11,Illumina sequencing of library DN465656V:B11  constructed from sample accession ERS1343302 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GAGCCAAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#82.cram,cram,340696650.0,2271311.0,SC RUN 21115 7#82,0:75 1:75,A:90082676;C:79663831;G:79306009;T:91620522;N:23612,75,75,,,90082676,79663831,79306009,91620522,23612,ERX1884468,ERS1343302,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95466,0.95796,0.1244,0.11949,0.68185,0.68128,0.47379,0.47395,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1363,ERR1821970,ERX1884462,ERS1343296,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 12,SAMEA4431847,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:59Z|INSDC status:public|Submitter Id:89901d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89901d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#76,DN465656V:D10,Illumina sequencing of library DN465656V:D10  constructed from sample accession ERS1343296 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GTACATCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#76.cram,cram,318221850.0,2121479.0,SC RUN 21115 7#76,0:75 1:75,A:83320795;C:75194711;G:74954216;T:84731231;N:20897,75,75,,,83320795,75194711,74954216,84731231,20897,ERX1884462,ERS1343296,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95709,0.9592,0.13197,0.12745,0.67608,0.6771,0.47647,0.47533,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1365,ERR1821968,ERX1884460,ERS1343294,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 20,SAMEA4431845,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:58Z|INSDC status:public|Submitter Id:897f0620 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:897f0620 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#74,DN465656V:B10,Illumina sequencing of library DN465656V:B10  constructed from sample accession ERS1343294 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GGTCGTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#74.cram,cram,336626850.0,2244179.0,SC RUN 21115 7#74,0:75 1:75,A:87825164;C:79779356;G:79631566;T:89367083;N:23681,75,75,,,87825164,79779356,79631566,89367083,23681,ERX1884460,ERS1343294,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95683,0.96064,0.13119,0.12727,0.67892,0.67955,0.47005,0.46207,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1366,ERR1821967,ERX1884459,ERS1343293,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 7,SAMEA4431844,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:57Z|INSDC status:public|Submitter Id:89765390 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89765390 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#73,DN465656V:A10,Illumina sequencing of library DN465656V:A10  constructed from sample accession ERS1343293 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GCAACATT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#73.cram,cram,320242950.0,2134953.0,SC RUN 21115 7#73,0:75 1:75,A:84132446;C:75309652;G:75169050;T:85609846;N:21956,75,75,,,84132446,75309652,75169050,85609846,21956,ERX1884459,ERS1343293,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95625,0.96001,0.13066,0.12619,0.68008,0.68008,0.47241,0.48273,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1368,ERR1821965,ERX1884457,ERS1343291,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 24,SAMEA4431842,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:55Z|INSDC status:public|Submitter Id:896563a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#71,DN465656V:G9,Illumina sequencing of library DN465656V:G9  constructed from sample accession ERS1343291 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GTGTCCTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#71.cram,cram,365379750.0,2435865.0,SC RUN 21115 7#71,0:75 1:75,A:96293094;C:85807064;G:85406506;T:97847164;N:25922,75,75,,,96293094,85807064,85406506,97847164,25922,ERX1884457,ERS1343291,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95424,0.95742,0.12954,0.12555,0.67874,0.68049,0.47358,0.47009,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1371,ERR1821962,ERX1884454,ERS1343288,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 4,SAMEA4431839,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:53Z|INSDC status:public|Submitter Id:894a1370 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:894a1370 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#68,DN465656V:D9,Illumina sequencing of library DN465656V:D9  constructed from sample accession ERS1343288 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGCGTGAA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#68.cram,cram,331162800.0,2207752.0,SC RUN 21115 7#68,0:75 1:75,A:85794412;C:79101880;G:78952864;T:87291049;N:22595,75,75,,,85794412,79101880,78952864,87291049,22595,ERX1884454,ERS1343288,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9592,0.96321,0.13082,0.12596,0.68038,0.68081,0.47174,0.46616,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1372,ERR1821961,ERX1884453,ERS1343287,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 3,SAMEA4431838,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#67,DN465656V:C9,Illumina sequencing of library DN465656V:C9  constructed from sample accession ERS1343287 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TACCACCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#67.cram,cram,331205700.0,2208038.0,SC RUN 21115 7#67,0:75 1:75,A:86616306;C:78329975;G:78118373;T:88118620;N:22426,75,75,,,86616306,78329975,78118373,88118620,22426,ERX1884453,ERS1343287,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95751,0.96214,0.12537,0.1204,0.68878,0.68858,0.48537,0.4863,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1373,ERR1821960,ERX1884452,ERS1343286,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 10,SAMEA4431837,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431837|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:51Z|INSDC status:public|Submitter Id:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#66,DN465656V:B9,Illumina sequencing of library DN465656V:B9  constructed from sample accession ERS1343286 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGAAGCCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#66.cram,cram,360167100.0,2401114.0,SC RUN 21115 7#66,0:75 1:75,A:93582225;C:85848013;G:85581536;T:95129867;N:25459,75,75,,,93582225,85848013,85581536,95129867,25459,ERX1884452,ERS1343286,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95821,0.96111,0.11971,0.11519,0.68724,0.6868,0.48254,0.48898,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1375,ERR1821958,ERX1884450,ERS1343284,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 16,SAMEA4431835,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#64,DN465656V:H8,Illumina sequencing of library DN465656V:H8  constructed from sample accession ERS1343284 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCTCTTCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#64.cram,cram,336721200.0,2244808.0,SC RUN 21115 7#64,0:75 1:75,A:86735439;C:80977534;G:80814443;T:88171542;N:22242,75,75,,,86735439,80977534,80814443,88171542,22242,ERX1884450,ERS1343284,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96051,0.96429,0.12669,0.12257,0.69051,0.69016,0.46539,0.46826,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1376,ERR1821957,ERX1884449,ERS1343283,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 6,SAMEA4431834,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#63,DN465656V:G8,Illumina sequencing of library DN465656V:G8  constructed from sample accession ERS1343283 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGTGAAGA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#63.cram,cram,369606300.0,2464042.0,SC RUN 21115 7#63,0:75 1:75,A:95298069;C:88862861;G:88512446;T:96907144;N:25780,75,75,,,95298069,88862861,88512446,96907144,25780,ERX1884449,ERS1343283,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96106,0.96546,0.11794,0.11434,0.69753,0.69858,0.48929,0.48595,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1377,ERR1821956,ERX1884448,ERS1343282,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 21,SAMEA4431833,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:48Z|INSDC status:public|Submitter Id:8913e840 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8913e840 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#62,DN465656V:F8,Illumina sequencing of library DN465656V:F8  constructed from sample accession ERS1343282 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGACGGA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#62.cram,cram,318946500.0,2126310.0,SC RUN 21115 7#62,0:75 1:75,A:83294172;C:75546488;G:75378597;T:84706371;N:20872,75,75,,,83294172,75546488,75378597,84706371,20872,ERX1884448,ERS1343282,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95837,0.96123,0.13023,0.12538,0.6813,0.68189,0.47495,0.47596,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1378,ERR1821955,ERX1884447,ERS1343281,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 21,SAMEA4431832,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:47Z|INSDC status:public|Submitter Id:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#61,DN465656V:E8,Illumina sequencing of library DN465656V:E8  constructed from sample accession ERS1343281 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGCTGATA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#61.cram,cram,348135150.0,2320901.0,SC RUN 21115 7#61,0:75 1:75,A:91572265;C:81811057;G:81549256;T:93177722;N:24850,75,75,,,91572265,81811057,81549256,93177722,24850,ERX1884447,ERS1343281,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95568,0.95891,0.12837,0.12239,0.67754,0.67716,0.47787,0.47701,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1381,ERR1821952,ERX1884444,ERS1343278,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 3,SAMEA4431829,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431829|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#58,DN465656V:B8,Illumina sequencing of library DN465656V:B8  constructed from sample accession ERS1343278 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGACAGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#58.cram,cram,328086150.0,2187241.0,SC RUN 21115 7#58,0:75 1:75,A:85080319;C:78326244;G:78231894;T:86424790;N:22903,75,75,,,85080319,78326244,78231894,86424790,22903,ERX1884444,ERS1343278,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95723,0.96059,0.1249,0.12125,0.67438,0.67363,0.47214,0.47571,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1382,ERR1821951,ERX1884443,ERS1343277,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 4,SAMEA4431828,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#57,DN465656V:A8,Illumina sequencing of library DN465656V:A8  constructed from sample accession ERS1343277 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCTACGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#57.cram,cram,342888600.0,2285924.0,SC RUN 21115 7#57,0:75 1:75,A:89589944;C:81204257;G:80998953;T:91071349;N:24097,75,75,,,89589944,81204257,80998953,91071349,24097,ERX1884443,ERS1343277,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95568,0.95951,0.11882,0.11586,0.68071,0.68083,0.47558,0.47205,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1385,ERR1821948,ERX1884440,ERS1343274,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 5,SAMEA4431825,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#54,DN465656V:F7,Illumina sequencing of library DN465656V:F7  constructed from sample accession ERS1343274 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGTTCTCC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#54.cram,cram,311123100.0,2074154.0,SC RUN 21115 7#54,0:75 1:75,A:80977085;C:73956503;G:73826166;T:82342166;N:21180,75,75,,,80977085,73956503,73826166,82342166,21180,ERX1884440,ERS1343274,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95727,0.96199,0.126,0.12217,0.68071,0.68073,0.48334,0.48234,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1388,ERR1821945,ERX1884437,ERS1343271,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 22,SAMEA4431822,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:38Z|INSDC status:public|Submitter Id:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#51,DN465656V:C7,Illumina sequencing of library DN465656V:C7  constructed from sample accession ERS1343271 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTACTCGC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#51.cram,cram,340949700.0,2272998.0,SC RUN 21115 7#51,0:75 1:75,A:88760980;C:81019440;G:80840504;T:90302998;N:25778,75,75,,,88760980,81019440,80840504,90302998,25778,ERX1884437,ERS1343271,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95837,0.96259,0.11867,0.11452,0.69337,0.69382,0.48444,0.4906,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1393,ERR1821940,ERX1884432,ERS1343266,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 18,SAMEA4431817,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:34Z|INSDC status:public|Submitter Id:8888e650 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8888e650 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#46,DN465656V:F6,Illumina sequencing of library DN465656V:F6  constructed from sample accession ERS1343266 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCAGATTC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#46.cram,cram,330055050.0,2200367.0,SC RUN 21115 7#46,0:75 1:75,A:85481444;C:78898716;G:78797938;T:86854377;N:22575,75,75,,,85481444,78898716,78797938,86854377,22575,ERX1884432,ERS1343266,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95991,0.96358,0.11884,0.11578,0.68284,0.68434,0.47867,0.48444,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1394,ERR1821939,ERX1884431,ERS1343265,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 17,SAMEA4431816,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:33Z|INSDC status:public|Submitter Id:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#45,DN465656V:E6,Illumina sequencing of library DN465656V:E6  constructed from sample accession ERS1343265 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TATGCCAG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#45.cram,cram,345969900.0,2306466.0,SC RUN 21115 7#45,0:75 1:75,A:90927344;C:81421201;G:81202158;T:92396072;N:23125,75,75,,,90927344,81421201,81202158,92396072,23125,ERX1884431,ERS1343265,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95523,0.9594,0.12879,0.12441,0.68371,0.68245,0.48658,0.47772,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1398,ERR1821935,ERX1884427,ERS1343261,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 17,SAMEA4431812,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#41,DN465656V:A6,Illumina sequencing of library DN465656V:A6  constructed from sample accession ERS1343261 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCCAGTCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#41.cram,cram,328126350.0,2187509.0,SC RUN 21115 7#41,0:75 1:75,A:84642756;C:78721382;G:78649568;T:86088943;N:23701,75,75,,,84642756,78721382,78649568,86088943,23701,ERX1884427,ERS1343261,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95948,0.9638,0.13772,0.13476,0.67886,0.67923,0.4859,0.47157,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1403,ERR1821930,ERX1884422,ERS1343256,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 14,SAMEA4431807,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#36,DN465656V:D5,Illumina sequencing of library DN465656V:D5  constructed from sample accession ERS1343256 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGAACTGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#36.cram,cram,339549600.0,2263664.0,SC RUN 21115 7#36,0:75 1:75,A:86935886;C:82184115;G:82019061;T:88386477;N:24061,75,75,,,86935886,82184115,82019061,88386477,24061,ERX1884422,ERS1343256,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9625,0.96656,0.10814,0.10457,0.69077,0.69104,0.48142,0.47703,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1405,ERR1821928,ERX1884420,ERS1343254,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 6,SAMEA4431805,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:24Z|INSDC status:public|Submitter Id:882171f0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#34,DN465656V:B5,Illumina sequencing of library DN465656V:B5  constructed from sample accession ERS1343254 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAACGCTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#34.cram,cram,340225350.0,2268169.0,SC RUN 21115 7#34,0:75 1:75,A:89140873;C:80359815;G:80091727;T:90609762;N:23173,75,75,,,89140873,80359815,80091727,90609762,23173,ERX1884420,ERS1343254,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95688,0.96041,0.11971,0.11541,0.68674,0.68718,0.47042,0.47524,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1408,ERR1821925,ERX1884417,ERS1343251,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 19,SAMEA4431802,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:22Z|INSDC status:public|Submitter Id:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#31,DN465656V:G4,Illumina sequencing of library DN465656V:G4  constructed from sample accession ERS1343251 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGTCTTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#31.cram,cram,338695950.0,2257973.0,SC RUN 21115 7#31,0:75 1:75,A:88637707;C:80089055;G:79880255;T:90066042;N:22891,75,75,,,88637707,80089055,79880255,90066042,22891,ERX1884417,ERS1343251,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95645,0.96094,0.13554,0.1313,0.67907,0.68008,0.4806,0.48064,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1410,ERR1821923,ERX1884415,ERS1343249,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 1,SAMEA4431800,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:20Z|INSDC status:public|Submitter Id:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#29,DN465656V:E4,Illumina sequencing of library DN465656V:E4  constructed from sample accession ERS1343249 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCCTCAAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#29.cram,cram,366322350.0,2442149.0,SC RUN 21115 7#29,0:75 1:75,A:94017056;C:88415257;G:88329033;T:95536586;N:24418,75,75,,,94017056,88415257,88329033,95536586,24418,ERX1884415,ERS1343249,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95967,0.96398,0.12878,0.12562,0.6826,0.68227,0.47576,0.4828,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1411,ERR1821922,ERX1884414,ERS1343248,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 9,SAMEA4431799,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:19Z|INSDC status:public|Submitter Id:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#28,DN465656V:D4,Illumina sequencing of library DN465656V:D4  constructed from sample accession ERS1343248 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TACAGGAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#28.cram,cram,364518600.0,2430124.0,SC RUN 21115 7#28,0:75 1:75,A:95092411;C:86578092;G:86167378;T:96656365;N:24354,75,75,,,95092411,86578092,86167378,96656365,24354,ERX1884414,ERS1343248,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95832,0.96248,0.12173,0.1165,0.68927,0.69014,0.48572,0.48471,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1412,ERR1821921,ERX1884413,ERS1343247,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 13,SAMEA4431798,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:18Z|INSDC status:public|Submitter Id:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#27,DN465656V:C4,Illumina sequencing of library DN465656V:C4  constructed from sample accession ERS1343247 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGTGACT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#27.cram,cram,354481650.0,2363211.0,SC RUN 21115 7#27,0:75 1:75,A:91732533;C:84785566;G:84645818;T:93293392;N:24341,75,75,,,91732533,84785566,84645818,93293392,24341,ERX1884413,ERS1343247,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96029,0.96432,0.1188,0.11522,0.68047,0.6818,0.4676,0.46541,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1413,ERR1821920,ERX1884412,ERS1343246,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 15,SAMEA4431797,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:17Z|INSDC status:public|Submitter Id:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#26,DN465656V:B4,Illumina sequencing of library DN465656V:B4  constructed from sample accession ERS1343246 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTCCTGCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#26.cram,cram,331984500.0,2213230.0,SC RUN 21115 7#26,0:75 1:75,A:86348725;C:78998309;G:78858826;T:87756035;N:22605,75,75,,,86348725,78998309,78858826,87756035,22605,ERX1884412,ERS1343246,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95887,0.96214,0.11962,0.11489,0.6815,0.68148,0.47571,0.47326,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1414,ERR1821919,ERX1884411,ERS1343245,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 20,SAMEA4431796,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#25,DN465656V:A4,Illumina sequencing of library DN465656V:A4  constructed from sample accession ERS1343245 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGCGATCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#25.cram,cram,320720700.0,2138138.0,SC RUN 21115 7#25,0:75 1:75,A:84088856;C:75649711;G:75458666;T:85500924;N:22543,75,75,,,84088856,75649711,75458666,85500924,22543,ERX1884411,ERS1343245,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95593,0.95888,0.12916,0.12423,0.68448,0.68294,0.48286,0.48538,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1415,ERR1821918,ERX1884410,ERS1343244,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 22,SAMEA4431795,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#24,DN465656V:H3,Illumina sequencing of library DN465656V:H3  constructed from sample accession ERS1343244 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTGACTCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#24.cram,cram,401229000.0,2674860.0,SC RUN 21115 7#24,0:75 1:75,A:104380185;C:95588978;G:95185797;T:106047162;N:26878,75,75,,,104380185,95588978,95185797,106047162,26878,ERX1884410,ERS1343244,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95821,0.96231,0.11999,0.11696,0.68109,0.68183,0.48041,0.47251,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1417,ERR1821916,ERX1884408,ERS1343242,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 11,SAMEA4431793,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431793|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:14Z|INSDC status:public|Submitter Id:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#22,DN465656V:F3,Illumina sequencing of library DN465656V:F3  constructed from sample accession ERS1343242 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGATACGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#22.cram,cram,354227550.0,2361517.0,SC RUN 21115 7#22,0:75 1:75,A:93246529;C:83230502;G:82935819;T:94790120;N:24580,75,75,,,93246529,83230502,82935819,94790120,24580,ERX1884408,ERS1343242,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95696,0.96069,0.12744,0.12223,0.67754,0.67738,0.47384,0.47366,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1418,ERR1821915,ERX1884407,ERS1343241,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 9,SAMEA4431792,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431792|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:13Z|INSDC status:public|Submitter Id:87be1c40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87be1c40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#21,DN465656V:E3,Illumina sequencing of library DN465656V:E3  constructed from sample accession ERS1343241 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCGAGCGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#21.cram,cram,332916150.0,2219441.0,SC RUN 21115 7#21,0:75 1:75,A:86106400;C:79663230;G:79547867;T:87574639;N:24014,75,75,,,86106400,79663230,79547867,87574639,24014,ERX1884407,ERS1343241,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95985,0.96377,0.12288,0.11903,0.68532,0.68523,0.47121,0.47269,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1419,ERR1821914,ERX1884406,ERS1343240,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 1,SAMEA4431791,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431791|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:12Z|INSDC status:public|Submitter Id:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#20,DN465656V:D3,Illumina sequencing of library DN465656V:D3  constructed from sample accession ERS1343240 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTGGAGGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#20.cram,cram,337598700.0,2250658.0,SC RUN 21115 7#20,0:75 1:75,A:86997927;C:81096038;G:81038067;T:88443426;N:23242,75,75,,,86997927,81096038,81038067,88443426,23242,ERX1884406,ERS1343240,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96164,0.96613,0.1238,0.12027,0.68769,0.68797,0.47914,0.47027,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1422,ERR1821911,ERX1884403,ERS1343237,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 13,SAMEA4431788,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431788|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:10Z|INSDC status:public|Submitter Id:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#17,DN465656V:A3,Illumina sequencing of library DN465656V:A3  constructed from sample accession ERS1343237 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TGTACCTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#17.cram,cram,265689750.0,1771265.0,SC RUN 21115 7#17,0:75 1:75,A:69761602;C:62539487;G:62444788;T:70924883;N:18990,75,75,,,69761602,62539487,62444788,70924883,18990,ERX1884403,ERS1343237,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95599,0.95983,0.12869,0.12327,0.67925,0.68045,0.46923,0.46159,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1425,ERR1821908,ERX1884400,ERS1343234,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 8,SAMEA4431785,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431785|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:07Z|INSDC status:public|Submitter Id:878ab030 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:878ab030 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#14,DN465656V:F2,Illumina sequencing of library DN465656V:F2  constructed from sample accession ERS1343234 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TCTCGGTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#14.cram,cram,299481000.0,1996540.0,SC RUN 21115 7#14,0:75 1:75,A:77178332;C:71998773;G:71843576;T:78438313;N:22006,75,75,,,77178332,71998773,71843576,78438313,22006,ERX1884400,ERS1343234,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96076,0.96422,0.12622,0.12165,0.68803,0.68891,0.47017,0.47616,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1428,ERR1821905,ERX1884397,ERS1343231,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 14,SAMEA4431782,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431782|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:05Z|INSDC status:public|Submitter Id:877182e0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:877182e0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#11,DN465656V:C2,Illumina sequencing of library DN465656V:C2  constructed from sample accession ERS1343231 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence GGCTACAG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#11.cram,cram,320521950.0,2136813.0,SC RUN 21115 7#11,0:75 1:75,A:84018705;C:75695161;G:75424320;T:85360772;N:22992,75,75,,,84018705,75695161,75424320,85360772,22992,ERX1884397,ERS1343231,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95781,0.96265,0.11883,0.11449,0.68613,0.68724,0.48729,0.48412,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1429,ERR1821904,ERX1884396,ERS1343230,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 19,SAMEA4431781,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431781|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:04Z|INSDC status:public|Submitter Id:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#10,DN465656V:B2,Illumina sequencing of library DN465656V:B2  constructed from sample accession ERS1343230 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TAGCTTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#10.cram,cram,341330550.0,2275537.0,SC RUN 21115 7#10,0:75 1:75,A:88881827;C:81100577;G:80952610;T:90372489;N:23047,75,75,,,88881827,81100577,80952610,90372489,23047,ERX1884396,ERS1343230,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95807,0.9608,0.13472,0.13072,0.67943,0.68164,0.47486,0.47528,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1434,ERR1821899,ERX1884391,ERS1343225,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 23,SAMEA4431776,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431776|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:41:59Z|INSDC status:public|Submitter Id:87436e00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87436e00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#5,DN465656V:E1,Illumina sequencing of library DN465656V:E1  constructed from sample accession ERS1343225 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence ACAGTGGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#5.cram,cram,310863300.0,2072422.0,SC RUN 21115 7#5,0:75 1:75,A:82882606;C:72122589;G:71664609;T:84171411;N:22085,75,75,,,82882606,72122589,71664609,84171411,22085,ERX1884391,ERS1343225,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95338,0.95787,0.13123,0.12617,0.68124,0.68245,0.47344,0.47269,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1436,ERR1821897,ERX1884389,ERS1343223,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 15,SAMEA4431774,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431774|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:57Z|INSDC status:public|Submitter Id:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#3,DN465656V:C1,Illumina sequencing of library DN465656V:C1  constructed from sample accession ERS1343223 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence TTAGGCAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#3.cram,cram,317589600.0,2117264.0,SC RUN 21115 7#3,0:75 1:75,A:83402478;C:74821194;G:74551562;T:84791784;N:22582,75,75,,,83402478,74821194,74551562,84791784,22582,ERX1884389,ERS1343223,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95433,0.95912,0.13446,0.13088,0.67732,0.67829,0.47951,0.4764,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1437,ERR1821896,ERX1884388,ERS1343222,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 18,SAMEA4431773,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431773|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:56Z|INSDC status:public|Submitter Id:870f65b0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:870f65b0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#2,DN465656V:B1,Illumina sequencing of library DN465656V:B1  constructed from sample accession ERS1343222 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence CGATGTTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#2.cram,cram,293577000.0,1957180.0,SC RUN 21115 7#2,0:75 1:75,A:77750011;C:68531930;G:68273993;T:79000857;N:20209,75,75,,,77750011,68531930,68273993,79000857,20209,ERX1884388,ERS1343222,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95171,0.95589,0.13816,0.13514,0.67629,0.67547,0.47871,0.46646,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1438,ERR1821895,ERX1884387,ERS1343221,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 5,SAMEA4431772,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431772|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:55Z|INSDC status:public|Submitter Id:86fb1a60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:86fb1a60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 7#1,DN465656V:A1,Illumina sequencing of library DN465656V:A1  constructed from sample accession ERS1343221 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 7.  This submission includes reads tagged with the sequence ATCACGTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_7#1.cram,cram,312615300.0,2084102.0,SC RUN 21115 7#1,0:75 1:75,A:82010578;C:73778620;G:73476362;T:83328293;N:21447,75,75,,,82010578,73778620,73476362,83328293,21447,ERX1884387,ERS1343221,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95424,0.95872,0.13615,0.13291,0.67848,0.67821,0.48083,0.47719,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1439,ERR1821894,ERX1884386,ERS1343316,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 7,SAMEA4431867,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:16Z|INSDC status:public|Submitter Id:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#96,DN465656V:H12,Illumina sequencing of library DN465656V:H12  constructed from sample accession ERS1343316 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GTCTTGGC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#96.cram,cram,345081000.0,2300540.0,SC RUN 21115 6#96,0:75 1:75,A:91644012;C:80503625;G:79946465;T:92962207;N:24691,75,75,,,91644012,80503625,79946465,92962207,24691,ERX1884386,ERS1343316,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95678,0.95935,0.12884,0.12331,0.68917,0.68915,0.49222,0.48959,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1440,ERR1821893,ERX1884385,ERS1343315,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 11,SAMEA4431866,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#95,DN465656V:G12,Illumina sequencing of library DN465656V:G12  constructed from sample accession ERS1343315 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GATTCATC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#95.cram,cram,363186300.0,2421242.0,SC RUN 21115 6#95,0:75 1:75,A:95668966;C:85460566;G:85017029;T:97014320;N:25419,75,75,,,95668966,85460566,85017029,97014320,25419,ERX1884385,ERS1343315,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9539,0.95767,0.13011,0.12612,0.68091,0.68193,0.47262,0.45237,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1441,ERR1821892,ERX1884384,ERS1343314,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 10,SAMEA4431865,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#94,DN465656V:F12,Illumina sequencing of library DN465656V:F12  constructed from sample accession ERS1343314 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GCTAACTC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#94.cram,cram,309097650.0,2060651.0,SC RUN 21115 6#94,0:75 1:75,A:81793149;C:72286091;G:71961662;T:83034568;N:22180,75,75,,,81793149,72286091,71961662,83034568,22180,ERX1884384,ERS1343314,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95476,0.95776,0.12772,0.12255,0.68357,0.68359,0.47391,0.47015,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1442,ERR1821891,ERX1884383,ERS1343313,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 8,SAMEA4431864,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:14Z|INSDC status:public|Submitter Id:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#93,DN465656V:E12,Illumina sequencing of library DN465656V:E12  constructed from sample accession ERS1343313 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GCACTGTC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#93.cram,cram,351111150.0,2340741.0,SC RUN 21115 6#93,0:75 1:75,A:90046066;C:84850979;G:84793542;T:91396973;N:23590,75,75,,,90046066,84850979,84793542,91396973,23590,ERX1884383,ERS1343313,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96371,0.96695,0.12566,0.12315,0.68984,0.69177,0.48155,0.47873,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1445,ERR1821888,ERX1884380,ERS1343310,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 23,SAMEA4431861,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:11Z|INSDC status:public|Submitter Id:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#90,DN465656V:B12,Illumina sequencing of library DN465656V:B12  constructed from sample accession ERS1343310 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GCAATCCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#90.cram,cram,327176100.0,2181174.0,SC RUN 21115 6#90,0:75 1:75,A:85797808;C:77208746;G:76973605;T:87174350;N:21591,75,75,,,85797808,77208746,76973605,87174350,21591,ERX1884380,ERS1343310,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95524,0.95895,0.12923,0.12528,0.6785,0.67669,0.4702,0.47308,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1447,ERR1821886,ERX1884378,ERS1343308,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 24,SAMEA4431859,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:10Z|INSDC status:public|Submitter Id:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#88,DN465656V:H11,Illumina sequencing of library DN465656V:H11  constructed from sample accession ERS1343308 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GATAGAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#88.cram,cram,342069750.0,2280465.0,SC RUN 21115 6#88,0:75 1:75,A:90927679;C:79641770;G:79198404;T:92279313;N:22584,75,75,,,90927679,79641770,79198404,92279313,22584,ERX1884378,ERS1343308,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95225,0.95552,0.13847,0.13441,0.67586,0.67647,0.47759,0.47668,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1449,ERR1821884,ERX1884376,ERS1343306,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 2,SAMEA4431857,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:08Z|INSDC status:public|Submitter Id:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#86,DN465656V:F11,Illumina sequencing of library DN465656V:F11  constructed from sample accession ERS1343306 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GTTGTCGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#86.cram,cram,297494250.0,1983295.0,SC RUN 21115 6#86,0:75 1:75,A:78113837;C:70164429;G:69789398;T:79405552;N:21034,75,75,,,78113837,70164429,69789398,79405552,21034,ERX1884376,ERS1343306,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95656,0.96096,0.12219,0.11713,0.68639,0.68594,0.47263,0.44681,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1450,ERR1821883,ERX1884375,ERS1343305,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 16,SAMEA4431856,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:07Z|INSDC status:public|Submitter Id:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#85,DN465656V:E11,Illumina sequencing of library DN465656V:E11  constructed from sample accession ERS1343305 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GAGGATGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#85.cram,cram,360064650.0,2400431.0,SC RUN 21115 6#85,0:75 1:75,A:93791078;C:85632703;G:85403247;T:95212006;N:25616,75,75,,,93791078,85632703,85403247,95212006,25616,ERX1884375,ERS1343305,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96051,0.96334,0.13052,0.12588,0.69838,0.69867,0.49124,0.49014,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1451,ERR1821882,ERX1884374,ERS1343304,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 2,SAMEA4431855,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431855|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:06Z|INSDC status:public|Submitter Id:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#84,DN465656V:D11,Illumina sequencing of library DN465656V:D11  constructed from sample accession ERS1343304 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GTAAGGTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#84.cram,cram,342419700.0,2282798.0,SC RUN 21115 6#84,0:75 1:75,A:88339298;C:82188635;G:82099822;T:89767401;N:24544,75,75,,,88339298,82188635,82099822,89767401,24544,ERX1884374,ERS1343304,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9594,0.9639,0.12263,0.11953,0.6874,0.6882,0.47923,0.47477,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1453,ERR1821880,ERX1884372,ERS1343302,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 12,SAMEA4431853,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:05Z|INSDC status:public|Submitter Id:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#82,DN465656V:B11,Illumina sequencing of library DN465656V:B11  constructed from sample accession ERS1343302 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GAGCCAAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#82.cram,cram,339271800.0,2261812.0,SC RUN 21115 6#82,0:75 1:75,A:89689630;C:79346388;G:78967007;T:91244790;N:23985,75,75,,,89689630,79346388,78967007,91244790,23985,ERX1884372,ERS1343302,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95414,0.958,0.12425,0.11988,0.68483,0.6844,0.47108,0.4771,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1459,ERR1821874,ERX1884366,ERS1343296,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 12,SAMEA4431847,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:59Z|INSDC status:public|Submitter Id:89901d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89901d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#76,DN465656V:D10,Illumina sequencing of library DN465656V:D10  constructed from sample accession ERS1343296 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GTACATCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#76.cram,cram,318161250.0,2121075.0,SC RUN 21115 6#76,0:75 1:75,A:83280615;C:75193091;G:74975360;T:84689631;N:22553,75,75,,,83280615,75193091,74975360,84689631,22553,ERX1884366,ERS1343296,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.956,0.95977,0.1314,0.12784,0.67462,0.67566,0.47969,0.47717,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1461,ERR1821872,ERX1884364,ERS1343294,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 20,SAMEA4431845,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:58Z|INSDC status:public|Submitter Id:897f0620 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:897f0620 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#74,DN465656V:B10,Illumina sequencing of library DN465656V:B10  constructed from sample accession ERS1343294 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GGTCGTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#74.cram,cram,335698050.0,2237987.0,SC RUN 21115 6#74,0:75 1:75,A:87573533;C:79562687;G:79433179;T:89103801;N:24850,75,75,,,87573533,79562687,79433179,89103801,24850,ERX1884364,ERS1343294,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95677,0.96007,0.13015,0.12574,0.67852,0.67927,0.4713,0.46763,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1462,ERR1821871,ERX1884363,ERS1343293,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 7,SAMEA4431844,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:57Z|INSDC status:public|Submitter Id:89765390 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89765390 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#73,DN465656V:A10,Illumina sequencing of library DN465656V:A10  constructed from sample accession ERS1343293 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GCAACATT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#73.cram,cram,319905450.0,2132703.0,SC RUN 21115 6#73,0:75 1:75,A:84048036;C:75245962;G:75099754;T:85489648;N:22050,75,75,,,84048036,75245962,75099754,85489648,22050,ERX1884363,ERS1343293,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95622,0.95951,0.1318,0.12701,0.67795,0.67963,0.4715,0.47342,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1464,ERR1821869,ERX1884361,ERS1343291,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 24,SAMEA4431842,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:55Z|INSDC status:public|Submitter Id:896563a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#71,DN465656V:G9,Illumina sequencing of library DN465656V:G9  constructed from sample accession ERS1343291 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GTGTCCTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#71.cram,cram,364560150.0,2430401.0,SC RUN 21115 6#71,0:75 1:75,A:96055007;C:85612712;G:85259174;T:97609215;N:24042,75,75,,,96055007,85612712,85259174,97609215,24042,ERX1884361,ERS1343291,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95536,0.95788,0.12936,0.12341,0.67886,0.67974,0.4774,0.47257,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1467,ERR1821866,ERX1884358,ERS1343288,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 4,SAMEA4431839,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:53Z|INSDC status:public|Submitter Id:894a1370 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:894a1370 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#68,DN465656V:D9,Illumina sequencing of library DN465656V:D9  constructed from sample accession ERS1343288 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGCGTGAA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#68.cram,cram,330650550.0,2204337.0,SC RUN 21115 6#68,0:75 1:75,A:85657332;C:79003383;G:78841297;T:87126221;N:22317,75,75,,,85657332,79003383,78841297,87126221,22317,ERX1884358,ERS1343288,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96025,0.96277,0.13225,0.12688,0.68028,0.68,0.46939,0.47625,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1468,ERR1821865,ERX1884357,ERS1343287,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 3,SAMEA4431838,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#67,DN465656V:C9,Illumina sequencing of library DN465656V:C9  constructed from sample accession ERS1343287 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TACCACCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#67.cram,cram,331194900.0,2207966.0,SC RUN 21115 6#67,0:75 1:75,A:86614461;C:78323515;G:78115873;T:88117431;N:23620,75,75,,,86614461,78323515,78115873,88117431,23620,ERX1884357,ERS1343287,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95806,0.9617,0.12558,0.12074,0.68615,0.68542,0.47351,0.47234,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1469,ERR1821864,ERX1884356,ERS1343286,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 10,SAMEA4431837,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431837|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:51Z|INSDC status:public|Submitter Id:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#66,DN465656V:B9,Illumina sequencing of library DN465656V:B9  constructed from sample accession ERS1343286 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGAAGCCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#66.cram,cram,359585700.0,2397238.0,SC RUN 21115 6#66,0:75 1:75,A:93442812;C:85708039;G:85443356;T:94966507;N:24986,75,75,,,93442812,85708039,85443356,94966507,24986,ERX1884356,ERS1343286,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95805,0.96156,0.11867,0.11431,0.68497,0.68649,0.48236,0.48397,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1471,ERR1821862,ERX1884354,ERS1343284,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 16,SAMEA4431835,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#64,DN465656V:H8,Illumina sequencing of library DN465656V:H8  constructed from sample accession ERS1343284 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCTCTTCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#64.cram,cram,336217950.0,2241453.0,SC RUN 21115 6#64,0:75 1:75,A:86600924;C:80885795;G:80696123;T:88010661;N:24447,75,75,,,86600924,80885795,80696123,88010661,24447,ERX1884354,ERS1343284,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96149,0.96565,0.12626,0.12215,0.68901,0.68874,0.46419,0.46684,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1472,ERR1821861,ERX1884353,ERS1343283,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 6,SAMEA4431834,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#63,DN465656V:G8,Illumina sequencing of library DN465656V:G8  constructed from sample accession ERS1343283 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGTGAAGA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#63.cram,cram,368963550.0,2459757.0,SC RUN 21115 6#63,0:75 1:75,A:95129168;C:88718452;G:88365055;T:96724664;N:26211,75,75,,,95129168,88718452,88365055,96724664,26211,ERX1884353,ERS1343283,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96203,0.96557,0.11674,0.11296,0.69627,0.69814,0.49195,0.49081,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1473,ERR1821860,ERX1884352,ERS1343282,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 21,SAMEA4431833,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:48Z|INSDC status:public|Submitter Id:8913e840 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8913e840 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#62,DN465656V:F8,Illumina sequencing of library DN465656V:F8  constructed from sample accession ERS1343282 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAGACGGA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#62.cram,cram,318504750.0,2123365.0,SC RUN 21115 6#62,0:75 1:75,A:83162262;C:75443190;G:75269735;T:84606652;N:22911,75,75,,,83162262,75443190,75269735,84606652,22911,ERX1884352,ERS1343282,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95728,0.96167,0.13029,0.12585,0.68185,0.68249,0.46803,0.47333,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1474,ERR1821859,ERX1884351,ERS1343281,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 21,SAMEA4431832,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:47Z|INSDC status:public|Submitter Id:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#61,DN465656V:E8,Illumina sequencing of library DN465656V:E8  constructed from sample accession ERS1343281 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGCTGATA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#61.cram,cram,347073450.0,2313823.0,SC RUN 21115 6#61,0:75 1:75,A:91290054;C:81597394;G:81309953;T:92852536;N:23513,75,75,,,91290054,81597394,81309953,92852536,23513,ERX1884351,ERS1343281,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95597,0.95908,0.12796,0.12334,0.6762,0.67645,0.48662,0.47247,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1477,ERR1821856,ERX1884348,ERS1343278,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 3,SAMEA4431829,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431829|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#58,DN465656V:B8,Illumina sequencing of library DN465656V:B8  constructed from sample accession ERS1343278 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGACAGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#58.cram,cram,327769050.0,2185127.0,SC RUN 21115 6#58,0:75 1:75,A:85001515;C:78219047;G:78171081;T:86354498;N:22909,75,75,,,85001515,78219047,78171081,86354498,22909,ERX1884348,ERS1343278,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95768,0.95988,0.1234,0.12033,0.67347,0.67436,0.47371,0.4761,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1478,ERR1821855,ERX1884347,ERS1343277,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 4,SAMEA4431828,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#57,DN465656V:A8,Illumina sequencing of library DN465656V:A8  constructed from sample accession ERS1343277 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCTACGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#57.cram,cram,342609600.0,2284064.0,SC RUN 21115 6#57,0:75 1:75,A:89501767;C:81150340;G:80928348;T:91005533;N:23612,75,75,,,89501767,81150340,80928348,91005533,23612,ERX1884347,ERS1343277,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95666,0.95947,0.11917,0.11555,0.68097,0.68097,0.4724,0.47141,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1481,ERR1821852,ERX1884344,ERS1343274,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 5,SAMEA4431825,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#54,DN465656V:F7,Illumina sequencing of library DN465656V:F7  constructed from sample accession ERS1343274 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGTTCTCC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#54.cram,cram,310826550.0,2072177.0,SC RUN 21115 6#54,0:75 1:75,A:80875492;C:73882701;G:73778637;T:82268382;N:21338,75,75,,,80875492,73882701,73778637,82268382,21338,ERX1884344,ERS1343274,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95749,0.96179,0.12424,0.12003,0.67967,0.67982,0.48091,0.47551,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1484,ERR1821849,ERX1884341,ERS1343271,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 22,SAMEA4431822,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:38Z|INSDC status:public|Submitter Id:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#51,DN465656V:C7,Illumina sequencing of library DN465656V:C7  constructed from sample accession ERS1343271 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TTACTCGC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#51.cram,cram,340740000.0,2271600.0,SC RUN 21115 6#51,0:75 1:75,A:88712447;C:80990669;G:80780022;T:90232904;N:23958,75,75,,,88712447,80990669,80780022,90232904,23958,ERX1884341,ERS1343271,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95899,0.96217,0.11893,0.11387,0.69384,0.69343,0.48492,0.49008,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1489,ERR1821844,ERX1884336,ERS1343266,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 18,SAMEA4431817,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:34Z|INSDC status:public|Submitter Id:8888e650 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8888e650 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#46,DN465656V:F6,Illumina sequencing of library DN465656V:F6  constructed from sample accession ERS1343266 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCAGATTC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#46.cram,cram,329276550.0,2195177.0,SC RUN 21115 6#46,0:75 1:75,A:85256355;C:78719080;G:78638627;T:86638984;N:23504,75,75,,,85256355,78719080,78638627,86638984,23504,ERX1884336,ERS1343266,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96004,0.96392,0.11998,0.11601,0.68304,0.68333,0.47754,0.47869,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1490,ERR1821843,ERX1884335,ERS1343265,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 17,SAMEA4431816,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:33Z|INSDC status:public|Submitter Id:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#45,DN465656V:E6,Illumina sequencing of library DN465656V:E6  constructed from sample accession ERS1343265 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TATGCCAG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#45.cram,cram,345276150.0,2301841.0,SC RUN 21115 6#45,0:75 1:75,A:90759334;C:81268319;G:81034519;T:92190083;N:23895,75,75,,,90759334,81268319,81034519,92190083,23895,ERX1884335,ERS1343265,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95671,0.96105,0.12926,0.12471,0.68268,0.68254,0.48751,0.47819,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1494,ERR1821839,ERX1884331,ERS1343261,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 17,SAMEA4431812,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#41,DN465656V:A6,Illumina sequencing of library DN465656V:A6  constructed from sample accession ERS1343261 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCCAGTCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#41.cram,cram,328054650.0,2187031.0,SC RUN 21115 6#41,0:75 1:75,A:84612234;C:78682169;G:78656004;T:86082189;N:22054,75,75,,,84612234,78682169,78656004,86082189,22054,ERX1884331,ERS1343261,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95963,0.96285,0.13796,0.13432,0.67925,0.67921,0.48858,0.48254,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1499,ERR1821834,ERX1884326,ERS1343256,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 14,SAMEA4431807,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#36,DN465656V:D5,Illumina sequencing of library DN465656V:D5  constructed from sample accession ERS1343256 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGAACTGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#36.cram,cram,339214050.0,2261427.0,SC RUN 21115 6#36,0:75 1:75,A:86846726;C:82088232;G:81945755;T:88309770;N:23567,75,75,,,86846726,82088232,81945755,88309770,23567,ERX1884326,ERS1343256,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9627,0.96656,0.10715,0.10394,0.69217,0.69276,0.48147,0.48049,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1501,ERR1821832,ERX1884324,ERS1343254,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 6,SAMEA4431805,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:24Z|INSDC status:public|Submitter Id:882171f0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#34,DN465656V:B5,Illumina sequencing of library DN465656V:B5  constructed from sample accession ERS1343254 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAACGCTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#34.cram,cram,340228200.0,2268188.0,SC RUN 21115 6#34,0:75 1:75,A:89124549;C:80356918;G:80126873;T:90596564;N:23296,75,75,,,89124549,80356918,80126873,90596564,23296,ERX1884324,ERS1343254,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95673,0.96062,0.12004,0.11591,0.68643,0.68598,0.46835,0.47742,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1504,ERR1821829,ERX1884321,ERS1343251,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 19,SAMEA4431802,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:22Z|INSDC status:public|Submitter Id:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#31,DN465656V:G4,Illumina sequencing of library DN465656V:G4  constructed from sample accession ERS1343251 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAGTCTTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#31.cram,cram,338676000.0,2257840.0,SC RUN 21115 6#31,0:75 1:75,A:88628796;C:80095770;G:79870942;T:90056055;N:24437,75,75,,,88628796,80095770,79870942,90056055,24437,ERX1884321,ERS1343251,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95695,0.96014,0.13495,0.13039,0.67866,0.67878,0.47871,0.47791,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1506,ERR1821827,ERX1884319,ERS1343249,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 1,SAMEA4431800,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:20Z|INSDC status:public|Submitter Id:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#29,DN465656V:E4,Illumina sequencing of library DN465656V:E4  constructed from sample accession ERS1343249 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCCTCAAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#29.cram,cram,366013650.0,2440091.0,SC RUN 21115 6#29,0:75 1:75,A:93921820;C:88335428;G:88267044;T:95464969;N:24389,75,75,,,93921820,88335428,88267044,95464969,24389,ERX1884319,ERS1343249,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95995,0.9634,0.12849,0.12623,0.68083,0.68071,0.47043,0.4775,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1507,ERR1821826,ERX1884318,ERS1343248,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 9,SAMEA4431799,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:19Z|INSDC status:public|Submitter Id:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#28,DN465656V:D4,Illumina sequencing of library DN465656V:D4  constructed from sample accession ERS1343248 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TACAGGAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#28.cram,cram,364624350.0,2430829.0,SC RUN 21115 6#28,0:75 1:75,A:95128841;C:86602587;G:86214533;T:96652995;N:25394,75,75,,,95128841,86602587,86214533,96652995,25394,ERX1884318,ERS1343248,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95869,0.96185,0.12216,0.11672,0.69002,0.68958,0.48356,0.47774,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1508,ERR1821825,ERX1884317,ERS1343247,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 13,SAMEA4431798,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:18Z|INSDC status:public|Submitter Id:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#27,DN465656V:C4,Illumina sequencing of library DN465656V:C4  constructed from sample accession ERS1343247 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAGTGACT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#27.cram,cram,353544300.0,2356962.0,SC RUN 21115 6#27,0:75 1:75,A:91522331;C:84577361;G:84407911;T:93010734;N:25963,75,75,,,91522331,84577361,84407911,93010734,25963,ERX1884317,ERS1343247,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9602,0.96441,0.11901,0.11601,0.67896,0.67878,0.47033,0.46846,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1509,ERR1821824,ERX1884316,ERS1343246,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 15,SAMEA4431797,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:17Z|INSDC status:public|Submitter Id:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#26,DN465656V:B4,Illumina sequencing of library DN465656V:B4  constructed from sample accession ERS1343246 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TTCCTGCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#26.cram,cram,331314450.0,2208763.0,SC RUN 21115 6#26,0:75 1:75,A:86185793;C:78834854;G:78695495;T:87575910;N:22398,75,75,,,86185793,78834854,78695495,87575910,22398,ERX1884316,ERS1343246,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95894,0.96203,0.11863,0.11459,0.68148,0.68231,0.4764,0.48235,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1510,ERR1821823,ERX1884315,ERS1343245,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 20,SAMEA4431796,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#25,DN465656V:A4,Illumina sequencing of library DN465656V:A4  constructed from sample accession ERS1343245 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGCGATCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#25.cram,cram,320373150.0,2135821.0,SC RUN 21115 6#25,0:75 1:75,A:83972888;C:75562310;G:75408337;T:85407391;N:22224,75,75,,,83972888,75562310,75408337,85407391,22224,ERX1884315,ERS1343245,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95571,0.95853,0.12984,0.12406,0.68166,0.68172,0.48743,0.48874,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1511,ERR1821822,ERX1884314,ERS1343244,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 22,SAMEA4431795,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#24,DN465656V:H3,Illumina sequencing of library DN465656V:H3  constructed from sample accession ERS1343244 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TTGACTCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#24.cram,cram,400246800.0,2668312.0,SC RUN 21115 6#24,0:75 1:75,A:104104327;C:95386224;G:94968581;T:105759859;N:27809,75,75,,,104104327,95386224,94968581,105759859,27809,ERX1884314,ERS1343244,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95799,0.9613,0.12003,0.11669,0.68162,0.68128,0.47765,0.47631,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1513,ERR1821820,ERX1884312,ERS1343242,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 11,SAMEA4431793,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431793|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:14Z|INSDC status:public|Submitter Id:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#22,DN465656V:F3,Illumina sequencing of library DN465656V:F3  constructed from sample accession ERS1343242 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGATACGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#22.cram,cram,353590950.0,2357273.0,SC RUN 21115 6#22,0:75 1:75,A:93081355;C:83082605;G:82794792;T:94606885;N:25313,75,75,,,93081355,83082605,82794792,94606885,25313,ERX1884312,ERS1343242,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95685,0.96049,0.12776,0.12281,0.67783,0.67929,0.47502,0.47546,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1514,ERR1821819,ERX1884311,ERS1343241,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 9,SAMEA4431792,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431792|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:13Z|INSDC status:public|Submitter Id:87be1c40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87be1c40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#21,DN465656V:E3,Illumina sequencing of library DN465656V:E3  constructed from sample accession ERS1343241 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCGAGCGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#21.cram,cram,332071650.0,2213811.0,SC RUN 21115 6#21,0:75 1:75,A:85890822;C:79474608;G:79337061;T:87346955;N:22204,75,75,,,85890822,79474608,79337061,87346955,22204,ERX1884311,ERS1343241,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96018,0.96424,0.12269,0.11874,0.68493,0.68491,0.4655,0.47235,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1515,ERR1821818,ERX1884310,ERS1343240,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 1,SAMEA4431791,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431791|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:12Z|INSDC status:public|Submitter Id:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#20,DN465656V:D3,Illumina sequencing of library DN465656V:D3  constructed from sample accession ERS1343240 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TTGGAGGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#20.cram,cram,337438050.0,2249587.0,SC RUN 21115 6#20,0:75 1:75,A:86964339;C:81063641;G:80993942;T:88393306;N:22822,75,75,,,86964339,81063641,80993942,88393306,22822,ERX1884310,ERS1343240,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96187,0.96524,0.1239,0.11963,0.6874,0.68785,0.44519,0.48236,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1518,ERR1821815,ERX1884307,ERS1343237,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 13,SAMEA4431788,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431788|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:10Z|INSDC status:public|Submitter Id:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#17,DN465656V:A3,Illumina sequencing of library DN465656V:A3  constructed from sample accession ERS1343237 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TGTACCTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#17.cram,cram,265128150.0,1767521.0,SC RUN 21115 6#17,0:75 1:75,A:69614645;C:62431922;G:62328641;T:70734372;N:18570,75,75,,,69614645,62431922,62328641,70734372,18570,ERX1884307,ERS1343237,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95612,0.96038,0.12872,0.12393,0.68116,0.68095,0.47432,0.46775,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1521,ERR1821812,ERX1884304,ERS1343234,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 8,SAMEA4431785,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431785|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:07Z|INSDC status:public|Submitter Id:878ab030 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:878ab030 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#14,DN465656V:F2,Illumina sequencing of library DN465656V:F2  constructed from sample accession ERS1343234 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TCTCGGTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#14.cram,cram,298859700.0,1992398.0,SC RUN 21115 6#14,0:75 1:75,A:77036734;C:71861177;G:71679650;T:78262120;N:20019,75,75,,,77036734,71861177,71679650,78262120,20019,ERX1884304,ERS1343234,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96063,0.96399,0.12584,0.12148,0.68777,0.68828,0.48045,0.48317,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1524,ERR1821809,ERX1884301,ERS1343231,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 14,SAMEA4431782,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431782|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:05Z|INSDC status:public|Submitter Id:877182e0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:877182e0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#11,DN465656V:C2,Illumina sequencing of library DN465656V:C2  constructed from sample accession ERS1343231 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence GGCTACAG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#11.cram,cram,320057700.0,2133718.0,SC RUN 21115 6#11,0:75 1:75,A:83889889;C:75606359;G:75317052;T:85221287;N:23113,75,75,,,83889889,75606359,75317052,85221287,23113,ERX1884301,ERS1343231,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95862,0.96237,0.12154,0.11605,0.68749,0.6882,0.486,0.48628,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1525,ERR1821808,ERX1884300,ERS1343230,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 19,SAMEA4431781,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431781|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:04Z|INSDC status:public|Submitter Id:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#10,DN465656V:B2,Illumina sequencing of library DN465656V:B2  constructed from sample accession ERS1343230 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TAGCTTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#10.cram,cram,340818600.0,2272124.0,SC RUN 21115 6#10,0:75 1:75,A:88729667;C:81011190;G:80859920;T:90194554;N:23269,75,75,,,88729667,81011190,80859920,90194554,23269,ERX1884300,ERS1343230,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95814,0.96185,0.13452,0.1309,0.6784,0.68026,0.47803,0.4708,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1530,ERR1821803,ERX1884295,ERS1343225,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 mock 6hpi 23,SAMEA4431776,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431776|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:41:59Z|INSDC status:public|Submitter Id:87436e00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87436e00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#5,DN465656V:E1,Illumina sequencing of library DN465656V:E1  constructed from sample accession ERS1343225 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence ACAGTGGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#5.cram,cram,310611750.0,2070745.0,SC RUN 21115 6#5,0:75 1:75,A:82779253;C:72087150;G:71638773;T:84084100;N:22474,75,75,,,82779253,72087150,71638773,84084100,22474,ERX1884295,ERS1343225,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95329,0.95707,0.13223,0.12657,0.68172,0.68288,0.46982,0.46904,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure
1532,ERR1821801,ERX1884293,ERS1343223,ERP012128,PRJEB10833,RNASeq of zebrafish embryos infected with pathogens,RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907,Transcriptome Analysis,Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq,ArrayExpress:E ERAD 428,,,zmp ph263 inf 6hpi 15,SAMEA4431774,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Hatching:Long pec   Hatching:Pec fin   ZFS:0000033   ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431774|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:57Z|INSDC status:public|Submitter Id:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium  pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 21115 6#3,DN465656V:C1,Illumina sequencing of library DN465656V:C1  constructed from sample accession ERS1343223 for study accession ERP012128.  This is part of an Illumina multiplexed sequencing run 21115 6.  This submission includes reads tagged with the sequence TTAGGCAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012128,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16,21115_6#3.cram,cram,316824750.0,2112165.0,SC RUN 21115 6#3,0:75 1:75,A:83196563;C:74637124;G:74387269;T:84581741;N:22053,75,75,,,83196563,74637124,74387269,84581741,22053,ERX1884293,ERS1343223,ERA808852,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95653,0.95967,0.13625,0.13208,0.67618,0.67647,0.47713,0.46938,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-09-12,Hatching,Embryo,Fin,Surface Structure