rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
50,DRR029944,DRX026962,DRS086502,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,ovulation duirng natural paring,zebrafish ovary isolated from adult fish at ovulation duirng natural paring. [RNAseq],SAMD00025434,,sample name:6 Ovu|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025434,DRX026962,6 Ovu,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025434,,,,351766656.0,9771296.0,DRR029944,0:36,A:79811727;C:85391142;G:90185809;T:96371771;N:6207,36,,,,79811727,85391142,90185809,96371771,6207,DRX026962,DRS086502,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91956,,0.01686,,0.76637,,0.45997,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
52,DRR029942,DRX026960,DRS086500,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo testosterone treatment,zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq  replicate],SAMD00025432,,sample name:4 Tes rep|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025432,DRX026960,4 Tes rep,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025432,,,,366042528.0,10167848.0,DRR029942,0:36,A:84988522;C:88640326;G:93559022;T:98847003;N:7655,36,,,,84988522,88640326,93559022,98847003,7655,DRX026960,DRS086500,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91602,,0.01846,,0.76015,,0.46475,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
53,DRR029941,DRX026959,DRS086499,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo testosterone treatment,zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq],SAMD00025431,,sample name:4 Tes|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025431,DRX026959,4 Tes,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025431,,,,1269835992.0,35273222.0,DRR029941,0:36,A:275250658;C:323605136;G:316729009;T:354204170;N:47019,36,,,,275250658,323605136,316729009,354204170,47019,DRX026959,DRS086499,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91467,,0.02353,,0.75962,,0.46861,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
54,DRR029940,DRX026958,DRS086498,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo diethylstilbestrol DES treatment,zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq  replicate],SAMD00025430,,sample name:3 DES rep|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025430,DRX026958,3 DES rep,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025430,,,,658651536.0,18295876.0,DRR029940,,,,,,,,,,,,DRX026958,DRS086498,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.89964,,0.01785,,0.76451,,0.45872,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
55,DRR029939,DRX026957,DRS086497,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo diethylstilbestrol DES treatment,zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq],SAMD00025429,,sample name:3 DES|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025429,DRX026957,3 DES,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025429,,,,1202024016.0,33389556.0,DRR029939,0:36,A:263319430;C:305852921;G:298798093;T:334008544;N:45028,36,,,,263319430,305852921,298798093,334008544,45028,DRX026957,DRS086497,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.90643,,0.02337,,0.75008,,0.47587,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
56,DRR029938,DRX026956,DRS086496,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo maturation inducing hormone DHP treatment,zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq  replicate],SAMD00025428,,sample name:2 DHP rep|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025428,DRX026956,2 DHP rep,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025428,,,,434243088.0,12062308.0,DRR029938,0:36,A:99859342;C:105890785;G:110526688;T:117957580;N:8693,36,,,,99859342,105890785,110526688,117957580,8693,DRX026956,DRS086496,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91529,,0.02061,,0.7595,,0.45809,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
57,DRR029937,DRX026955,DRS086495,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo maturation inducing hormone DHP treatment,zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq],SAMD00025427,,sample name:2 DHP|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025427,DRX026955,2 DHP,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025427,,,,1463868972.0,40663027.0,DRR029937,0:36,A:316060780;C:369221844;G:372845502;T:405685804;N:55042,36,,,,316060780,369221844,372845502,405685804,55042,DRX026955,DRS086495,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91556,,0.01967,,0.76621,,0.46541,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
58,DRR029936,DRX026954,DRS086494,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo ethanol treatment,zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq  replicate],SAMD00025426,,sample name:1 EtOH rep|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025426,DRX026954,1 EtOH rep,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025426,,,,438020208.0,12167228.0,DRR029936,0:36,A:101672612;C:105602774;G:110120652;T:120615069;N:9101,36,,,,101672612,105602774,110120652,120615069,9101,DRX026954,DRS086494,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.90777,,0.01929,,0.7652,,0.45988,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
59,DRR029935,DRX026953,DRS086493,DRP004756,PRJDB3475,Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004756,Other,To identify ovulation inducing genes  RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.,,,in vivo ethanol treatment,zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq],SAMD00025425,,sample name:1 EtOH|strain:roy|tissue type:ovary|dev stage:adult,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00025425,DRX026953,1 EtOH,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004756,Illumina HiSeq 2500 sequencing of SAMD00025425,,,,1365603372.0,37933427.0,DRR029935,0:36,A:299786286;C:345487829;G:342408447;T:377870789;N:50021,36,,,,299786286,345487829,342408447,377870789,50021,DRX026953,DRS086493,DRA003031,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91103,,0.02142,,0.75402,,0.46574,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
3203,ERR1397031,ERX1468290,ERS1021954,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool12,SAMEA3714805,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:24Z|INSDC status:public|Submitter Id:87bdea10 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GACGGATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87bdea10 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#23,15566205,Illumina sequencing of library 15566205  constructed from sample accession ERS1021954 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence GACGGATT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#23.cram,cram,751198110.0,5778447.0,SC RUN 18715 6#23,0:55 1:75,A:191946991;C:126344381;G:122669421;T:310228892;N:8425,55,75,,,191946991,126344381,122669421,310228892,8425,ERX1468290,ERS1021954,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.37206,0.64235,0.28439,0.15879,0.97015,0.87708,0.68528,0.61585,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3204,ERR1397030,ERX1468289,ERS1021953,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool11,SAMEA3714804,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714804|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:24Z|INSDC status:public|Submitter Id:87b585a0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTGTCCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87b585a0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#22,15566204,Illumina sequencing of library 15566204  constructed from sample accession ERS1021953 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence GTGTCCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#22.cram,cram,1159876120.0,8922124.0,SC RUN 18715 6#22,0:55 1:75,A:304674273;C:183994340;G:185216530;T:485977582;N:13395,55,75,,,304674273,183994340,185216530,485977582,13395,ERX1468289,ERS1021953,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.40213,0.64451,0.31242,0.11835,0.97126,0.88087,0.71598,0.66829,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3205,ERR1397029,ERX1468288,ERS1021952,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool10,SAMEA3714803,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714803|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:23Z|INSDC status:public|Submitter Id:87af9230 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATCTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87af9230 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#21,15566203,Illumina sequencing of library 15566203  constructed from sample accession ERS1021952 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence GATCTCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#21.cram,cram,1018285580.0,7832966.0,SC RUN 18715 6#21,0:55 1:75,A:260710092;C:168088728;G:168174700;T:421293207;N:18853,55,75,,,260710092,168088728,168174700,421293207,18853,ERX1468288,ERS1021952,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.36283,0.65286,0.23946,0.10637,0.96759,0.87505,0.77472,0.67244,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3206,ERR1397028,ERX1468287,ERS1021951,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool9,SAMEA3714802,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:23Z|INSDC status:public|Submitter Id:87a99ec0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGTGAGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87a99ec0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#20,15566202,Illumina sequencing of library 15566202  constructed from sample accession ERS1021951 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence GGTGAGTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#20.cram,cram,1411977710.0,10861367.0,SC RUN 18715 6#20,0:55 1:75,A:374589648;C:225886715;G:220197104;T:591287724;N:16519,55,75,,,374589648,225886715,220197104,591287724,16519,ERX1468287,ERS1021951,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.39416,0.64764,0.28305,0.12053,0.96893,0.87436,0.7641,0.65481,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3207,ERR1397027,ERX1468286,ERS1021950,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool8,SAMEA3714801,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714801|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:22Z|INSDC status:public|Submitter Id:87a3d260 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCGTGAA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87a3d260 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#19,15566201,Illumina sequencing of library 15566201  constructed from sample accession ERS1021950 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TGCGTGAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#19.cram,cram,1016290080.0,7817616.0,SC RUN 18715 6#19,0:55 1:75,A:260240299;C:171478739;G:166987743;T:417571647;N:11652,55,75,,,260240299,171478739,166987743,417571647,11652,ERX1468286,ERS1021950,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.35515,0.63046,0.24442,0.11538,0.96613,0.87612,0.72922,0.65047,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3208,ERR1397026,ERX1468285,ERS1021949,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool7,SAMEA3714800,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:22Z|INSDC status:public|Submitter Id:879e0600 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACCACCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:879e0600 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#18,15566200,Illumina sequencing of library 15566200  constructed from sample accession ERS1021949 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TACCACCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#18.cram,cram,1180619440.0,9081688.0,SC RUN 18715 6#18,0:55 1:75,A:298946933;C:194315152;G:193000429;T:494333293;N:23633,55,75,,,298946933,194315152,193000429,494333293,23633,ERX1468285,ERS1021949,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.34912,0.63575,0.24923,0.09867,0.9681,0.8731,0.70291,0.6486,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3209,ERR1397025,ERX1468284,ERS1021948,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool6,SAMEA3714799,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:22Z|INSDC status:public|Submitter Id:879860b0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGAAGCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:879860b0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#17,15566199,Illumina sequencing of library 15566199  constructed from sample accession ERS1021948 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TGAAGCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#17.cram,cram,1238519100.0,9527070.0,SC RUN 18715 6#17,0:55 1:75,A:315239597;C:209430294;G:203803110;T:510032418;N:13681,55,75,,,315239597,209430294,203803110,510032418,13681,ERX1468284,ERS1021948,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.32728,0.62755,0.22767,0.11416,0.96623,0.87495,0.69918,0.64115,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3210,ERR1397024,ERX1468283,ERS1021947,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool5,SAMEA3714798,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:21Z|INSDC status:public|Submitter Id:87926d40 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGTTCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87926d40 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#16,15566198,Illumina sequencing of library 15566198  constructed from sample accession ERS1021947 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TTGTTCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#16.cram,cram,872236560.0,6709512.0,SC RUN 18715 6#16,0:55 1:75,A:224098038;C:143410693;G:142553470;T:362157991;N:16368,55,75,,,224098038,143410693,142553470,362157991,16368,ERX1468283,ERS1021947,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.37381,0.63381,0.27114,0.09529,0.96737,0.87505,0.70827,0.66169,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3211,ERR1397023,ERX1468282,ERS1021946,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool4,SAMEA3714797,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:21Z|INSDC status:public|Submitter Id:878ca0e0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCTTCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:878ca0e0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#15,15566197,Illumina sequencing of library 15566197  constructed from sample accession ERS1021946 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TCTCTTCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#15.cram,cram,1444840280.0,11114156.0,SC RUN 18715 6#15,0:55 1:75,A:364072031;C:248315030;G:251492773;T:580934557;N:25889,55,75,,,364072031,248315030,251492773,580934557,25889,ERX1468282,ERS1021946,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.32171,0.65405,0.21207,0.10921,0.96449,0.8748,0.71299,0.6567,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3212,ERR1397022,ERX1468281,ERS1021945,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool3,SAMEA3714796,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:20Z|INSDC status:public|Submitter Id:8786ad70 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTGAAGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:8786ad70 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#14,15566196,Illumina sequencing of library 15566196  constructed from sample accession ERS1021945 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TGTGAAGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#14.cram,cram,864754670.0,6651959.0,SC RUN 18715 6#14,0:55 1:75,A:226263835;C:141780516;G:138005932;T:358694688;N:9699,55,75,,,226263835,141780516,138005932,358694688,9699,ERX1468281,ERS1021945,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.40415,0.62565,0.29154,0.13216,0.96889,0.87418,0.73048,0.62315,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3213,ERR1397021,ERX1468280,ERS1021944,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool2,SAMEA3714795,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:20Z|INSDC status:public|Submitter Id:8780ba00 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGACGGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:8780ba00 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#13,15566195,Illumina sequencing of library 15566195  constructed from sample accession ERS1021944 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TAGACGGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#13.cram,cram,1399844160.0,10768032.0,SC RUN 18715 6#13,0:55 1:75,A:359307834;C:233072864;G:226850737;T:580596206;N:16519,55,75,,,359307834,233072864,226850737,580596206,16519,ERX1468280,ERS1021944,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.36668,0.65848,0.27012,0.12398,0.96879,0.87643,0.69036,0.63461,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3214,ERR1397020,ERX1468279,ERS1021943,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 pool1,SAMEA3714794,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714794|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:20Z|INSDC status:public|Submitter Id:877b14b0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 133 clutch 1  collected at zygote  1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCTGATA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:877b14b0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#12,15566194,Illumina sequencing of library 15566194  constructed from sample accession ERS1021943 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TGCTGATA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#12.cram,cram,1546978550.0,11899835.0,SC RUN 18715 6#12,0:55 1:75,A:397883553;C:254195206;G:250537948;T:644343834;N:18009,55,75,,,397883553,254195206,250537948,644343834,18009,ERX1468279,ERS1021943,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.36347,0.66398,0.27957,0.12542,0.96855,0.87844,0.67369,0.3952,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3215,ERR1397019,ERX1468278,ERS1021942,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 12,SAMEA3714793,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714793|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:19Z|INSDC status:public|Submitter Id:8774d320 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCATCCTA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:8774d320 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#11,15566193,Illumina sequencing of library 15566193  constructed from sample accession ERS1021942 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TCATCCTA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#11.cram,cram,1553469710.0,11949767.0,SC RUN 18715 6#11,0:55 1:75,A:410422871;C:242077431;G:241118250;T:659820188;N:30970,55,75,,,410422871,242077431,241118250,659820188,30970,ERX1468278,ERS1021942,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.36479,0.64667,0.29935,0.12757,0.96917,0.87227,0.64824,0.63863,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3216,ERR1397018,ERX1468277,ERS1021941,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 11,SAMEA3714792,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714792|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:19Z|INSDC status:public|Submitter Id:876f2dd0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGAACAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:876f2dd0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#10,15566192,Illumina sequencing of library 15566192  constructed from sample accession ERS1021941 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TAGAACAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#10.cram,cram,1747864820.0,13445114.0,SC RUN 18715 6#10,0:55 1:75,A:454905458;C:284063384;G:281324493;T:727536453;N:35032,55,75,,,454905458,284063384,281324493,727536453,35032,ERX1468277,ERS1021941,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.38095,0.6331,0.28202,0.12055,0.97011,0.8787,0.68499,0.63949,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3217,ERR1397017,ERX1468276,ERS1021940,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 10,SAMEA3714791,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714791|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:18Z|INSDC status:public|Submitter Id:87698880 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGACAGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87698880 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#9,15566191,Illumina sequencing of library 15566191  constructed from sample accession ERS1021940 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TGACAGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#9.cram,cram,2968310670.0,22833159.0,SC RUN 18715 6#9,0:55 1:75,A:786070434;C:461542812;G:455677789;T:1264985671;N:33964,55,75,,,786070434,461542812,455677789,1264985671,33964,ERX1468276,ERS1021940,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.40674,0.64588,0.3161,0.13423,0.96901,0.87852,0.72136,0.65008,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3218,ERR1397016,ERX1468275,ERS1021939,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 9,SAMEA3714790,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714790|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:18Z|INSDC status:public|Submitter Id:8763bc20 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTACGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:8763bc20 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#8,15566190,Illumina sequencing of library 15566190  constructed from sample accession ERS1021939 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TCTACGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#8.cram,cram,1264137940.0,9724138.0,SC RUN 18715 6#8,0:55 1:75,A:321772810;C:212453760;G:212260765;T:517629125;N:21480,55,75,,,321772810,212453760,212260765,517629125,21480,ERX1468275,ERS1021939,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.40133,0.63937,0.27066,0.11274,0.9696,0.88404,0.75812,0.68883,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3219,ERR1397015,ERX1468274,ERS1021938,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 7,SAMEA3714789,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714789|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:17Z|INSDC status:public|Submitter Id:875defc0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCGCACC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:875defc0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#7,15566189,Illumina sequencing of library 15566189  constructed from sample accession ERS1021938 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TTCGCACC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#7.cram,cram,2145444470.0,16503419.0,SC RUN 18715 6#7,0:55 1:75,A:558755365;C:340430203;G:341169142;T:905048345;N:41415,55,75,,,558755365,340430203,341169142,905048345,41415,ERX1468274,ERS1021938,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.39609,0.65119,0.29356,0.11961,0.96895,0.87886,0.76521,0.66797,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3220,ERR1397014,ERX1468273,ERS1021937,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 6,SAMEA3714788,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714788|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:17Z|INSDC status:public|Submitter Id:87589890 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTTCTCC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87589890 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#6,15566188,Illumina sequencing of library 15566188  constructed from sample accession ERS1021937 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TGTTCTCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#6.cram,cram,1857946090.0,14291893.0,SC RUN 18715 6#6,0:55 1:75,A:482538187;C:300422854;G:305707647;T:769243854;N:33548,55,75,,,482538187,300422854,305707647,769243854,33548,ERX1468273,ERS1021937,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.36615,0.64353,0.26326,0.09871,0.96924,0.88116,0.75711,0.69297,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3221,ERR1397013,ERX1468272,ERS1021936,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 5,SAMEA3714787,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714787|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:16Z|INSDC status:public|Submitter Id:8753b690 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACCGAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:8753b690 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#5,15566187,Illumina sequencing of library 15566187  constructed from sample accession ERS1021936 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TACCGAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#5.cram,cram,1450038850.0,11154145.0,SC RUN 18715 6#5,0:55 1:75,A:379594186;C:230638380;G:227148310;T:612642023;N:15951,55,75,,,379594186,230638380,227148310,612642023,15951,ERX1468272,ERS1021936,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.4114,0.65677,0.32123,0.13279,0.96952,0.87907,0.72172,0.64605,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3222,ERR1397012,ERX1468271,ERS1021935,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 4,SAMEA3714786,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714786|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:16Z|INSDC status:public|Submitter Id:874ead80 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGTTAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:874ead80 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#4,15566186,Illumina sequencing of library 15566186  constructed from sample accession ERS1021935 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TCGTTAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#4.cram,cram,1523480790.0,11719083.0,SC RUN 18715 6#4,0:55 1:75,A:393691721;C:252740898;G:250763730;T:626266644;N:17797,55,75,,,393691721,252740898,250763730,626266644,17797,ERX1468271,ERS1021935,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.3797,0.64999,0.27703,0.12907,0.96814,0.87907,0.72685,0.6588,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3223,ERR1397011,ERX1468270,ERS1021934,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 3,SAMEA3714785,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714785|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:15Z|INSDC status:public|Submitter Id:8749a470 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTACTCGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:8749a470 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#3,15566185,Illumina sequencing of library 15566185  constructed from sample accession ERS1021934 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TTACTCGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#3.cram,cram,1483867580.0,11414366.0,SC RUN 18715 6#3,0:55 1:75,A:380806763;C:243701446;G:246396186;T:612935776;N:27409,55,75,,,380806763,243701446,246396186,612935776,27409,ERX1468270,ERS1021934,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.40078,0.64587,0.27052,0.1065,0.97043,0.8813,0.77713,0.68758,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3224,ERR1397010,ERX1468269,ERS1021933,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 2,SAMEA3714784,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714784|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:15Z|INSDC status:public|Submitter Id:87447450 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TATGTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:87447450 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#2,15566184,Illumina sequencing of library 15566184  constructed from sample accession ERS1021933 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TATGTGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#2.cram,cram,1845932010.0,14199477.0,SC RUN 18715 6#2,0:55 1:75,A:477476751;C:306218695;G:297857678;T:764357925;N:20961,55,75,,,477476751,306218695,297857678,764357925,20961,ERX1468269,ERS1021933,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.36646,0.65342,0.2654,0.11005,0.96491,0.87746,0.69525,0.64533,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3225,ERR1397009,ERX1468268,ERS1021932,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 133 1 1,SAMEA3714783,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714783|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:14Z|INSDC status:public|Submitter Id:873b9ab0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 133 clutch 1  collected at zygote   1 cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTCTATC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:873b9ab0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 6#1,15566183,Illumina sequencing of library 15566183  constructed from sample accession ERS1021932 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 6.  This submission includes reads tagged with the sequence TGTCTATC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_6#1.cram,cram,854726730.0,6574821.0,SC RUN 18715 6#1,0:55 1:75,A:222766562;C:136578435;G:135999020;T:359366824;N:15889,55,75,,,222766562,136578435,135999020,359366824,15889,ERX1468268,ERS1021932,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.44286,0.64442,0.34166,0.14342,0.97201,0.88185,0.76908,0.68272,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Zygote,Embryo,Oocyte,Reproductive System
3768,ERR1442920,ERX1513297,ERS1079244,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 G,SAMEA3892110,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892110|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#90,16564927,Illumina sequencing of library 16564927  constructed from sample accession ERS1079244 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GCAATCCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#90.cram,cram,270090000.0,1350450.0,SC RUN 19912 2#90,0:100 1:100,A:72757906;C:61880266;G:62367072;T:72660239;N:424517,100,100,,,72757906,61880266,62367072,72660239,424517,ERX1513297,ERS1079244,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96643,0.96553,0.12217,0.12441,0.81907,0.81978,0.60328,0.60195,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3769,ERR1442919,ERX1513296,ERS1079243,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 F,SAMEA3892109,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892109|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#89,16564915,Illumina sequencing of library 16564915  constructed from sample accession ERS1079243 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GTGTGTCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#89.cram,cram,342286600.0,1711433.0,SC RUN 19912 2#89,0:100 1:100,A:91263739;C:79506625;G:79929353;T:91027277;N:559606,100,100,,,91263739,79506625,79929353,91027277,559606,ERX1513296,ERS1079243,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9682,0.96068,0.11817,0.11963,0.82029,0.82085,0.60354,0.6043,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3770,ERR1442918,ERX1513295,ERS1079241,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 E,SAMEA3892107,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892107|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:751b0810 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:751b0810 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#88,16564998,Illumina sequencing of library 16564998  constructed from sample accession ERS1079241 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GATAGAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#88.cram,cram,338250200.0,1691251.0,SC RUN 19912 2#88,0:100 1:100,A:89540311;C:79403769;G:79345334;T:89426632;N:534154,100,100,,,89540311,79403769,79345334,89426632,534154,ERX1513295,ERS1079241,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96441,0.96812,0.13227,0.13586,0.81996,0.82059,0.61024,0.60659,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3771,ERR1442917,ERX1513294,ERS1079240,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 D,SAMEA3892106,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892106|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:750f4840 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:750f4840 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#87,16564986,Illumina sequencing of library 16564986  constructed from sample accession ERS1079240 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GGATTAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#87.cram,cram,304577400.0,1522887.0,SC RUN 19912 2#87,0:100 1:100,A:80089516;C:72073422;G:72141004;T:79786478;N:486980,100,100,,,80089516,72073422,72141004,79786478,486980,ERX1513294,ERS1079240,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96573,0.97011,0.11062,0.11325,0.81611,0.81641,0.59749,0.59437,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3772,ERR1442916,ERX1513293,ERS1079239,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 B,SAMEA3892105,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892105|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:15Z|INSDC status:public|Submitter Id:7503af80 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7503af80 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#86,16564974,Illumina sequencing of library 16564974  constructed from sample accession ERS1079239 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GTTGTCGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#86.cram,cram,351891200.0,1759456.0,SC RUN 19912 2#86,0:100 1:100,A:91843350;C:84096205;G:84086198;T:91311021;N:554426,100,100,,,91843350,84096205,84086198,91311021,554426,ERX1513293,ERS1079239,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96675,0.97075,0.1101,0.11304,0.81606,0.81734,0.43196,0.60106,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3858,ERR1442830,ERX1513207,ERS1079244,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 G,SAMEA3892110,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892110|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#90,16564927,Illumina sequencing of library 16564927  constructed from sample accession ERS1079244 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GCAATCCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#90.cram,cram,269916800.0,1349584.0,SC RUN 19912 1#90,0:100 1:100,A:72721683;C:61845258;G:62335991;T:72647788;N:366080,100,100,,,72721683,61845258,62335991,72647788,366080,ERX1513207,ERS1079244,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96682,0.95748,0.12056,0.12166,0.81872,0.81925,0.60651,0.60479,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3859,ERR1442829,ERX1513206,ERS1079243,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 F,SAMEA3892109,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892109|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#89,16564915,Illumina sequencing of library 16564915  constructed from sample accession ERS1079243 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GTGTGTCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#89.cram,cram,342648200.0,1713241.0,SC RUN 19912 1#89,0:100 1:100,A:91413074;C:79572025;G:80044490;T:91145580;N:473031,100,100,,,91413074,79572025,80044490,91145580,473031,ERX1513206,ERS1079243,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96841,0.96093,0.11881,0.12039,0.81974,0.82083,0.60603,0.60402,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3860,ERR1442828,ERX1513205,ERS1079241,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 E,SAMEA3892107,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892107|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:751b0810 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:751b0810 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#88,16564998,Illumina sequencing of library 16564998  constructed from sample accession ERS1079241 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GATAGAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#88.cram,cram,338436600.0,1692183.0,SC RUN 19912 1#88,0:100 1:100,A:89633077;C:79469750;G:79417724;T:89445236;N:470813,100,100,,,89633077,79469750,79417724,89445236,470813,ERX1513205,ERS1079241,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96459,0.96391,0.13273,0.13557,0.81874,0.8201,0.60673,0.60424,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3861,ERR1442827,ERX1513204,ERS1079240,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 D,SAMEA3892106,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892106|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:750f4840 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:750f4840 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#87,16564986,Illumina sequencing of library 16564986  constructed from sample accession ERS1079240 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GGATTAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#87.cram,cram,303787800.0,1518939.0,SC RUN 19912 1#87,0:100 1:100,A:79901033;C:71909681;G:71979523;T:79588132;N:409431,100,100,,,79901033,71909681,71979523,79588132,409431,ERX1513204,ERS1079240,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96574,0.96946,0.11013,0.1127,0.816,0.81712,0.59784,0.5984,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3862,ERR1442826,ERX1513203,ERS1079239,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 B,SAMEA3892105,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892105|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:15Z|INSDC status:public|Submitter Id:7503af80 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7503af80 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#86,16564974,Illumina sequencing of library 16564974  constructed from sample accession ERS1079239 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GTTGTCGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#86.cram,cram,351349000.0,1756745.0,SC RUN 19912 1#86,0:100 1:100,A:91724055;C:83967254;G:83988668;T:91196786;N:472237,100,100,,,91724055,83967254,83988668,91196786,472237,ERX1513203,ERS1079239,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96684,0.97025,0.11064,0.11348,0.81836,0.81945,0.43415,0.605,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3948,ERR1442740,ERX1513117,ERS1079244,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 G,SAMEA3892110,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892110|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 2#90,16564927,Illumina sequencing of library 16564927  constructed from sample accession ERS1079244 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 2.  This submission includes reads tagged with the sequence GCAATCCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_2#90.cram,cram,275555000.0,1377775.0,SC RUN 19850 2#90,0:100 1:100,A:74326778;C:63222081;G:63706996;T:74199258;N:99887,100,100,,,74326778,63222081,63706996,74199258,99887,ERX1513117,ERS1079244,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96724,0.95789,0.12097,0.12281,0.81836,0.81832,0.60216,0.60501,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3949,ERR1442739,ERX1513116,ERS1079243,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 F,SAMEA3892109,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892109|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 2#89,16564915,Illumina sequencing of library 16564915  constructed from sample accession ERS1079243 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 2.  This submission includes reads tagged with the sequence GTGTGTCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_2#89.cram,cram,347745600.0,1738728.0,SC RUN 19850 2#89,0:100 1:100,A:92864496;C:80867902;G:81296751;T:92591110;N:125341,100,100,,,92864496,80867902,81296751,92591110,125341,ERX1513116,ERS1079243,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96912,0.96133,0.11955,0.12111,0.81955,0.82043,0.60488,0.60806,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3950,ERR1442738,ERX1513115,ERS1079241,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 E,SAMEA3892107,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892107|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:751b0810 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:751b0810 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 2#88,16564998,Illumina sequencing of library 16564998  constructed from sample accession ERS1079241 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 2.  This submission includes reads tagged with the sequence GATAGAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_2#88.cram,cram,343463400.0,1717317.0,SC RUN 19850 2#88,0:100 1:100,A:91038987;C:80745982;G:80675114;T:90875884;N:127433,100,100,,,91038987,80745982,80675114,90875884,127433,ERX1513115,ERS1079241,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96377,0.9674,0.13245,0.13574,0.81927,0.81976,0.60923,0.60888,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3951,ERR1442737,ERX1513114,ERS1079240,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 D,SAMEA3892106,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892106|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:750f4840 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:750f4840 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 2#87,16564986,Illumina sequencing of library 16564986  constructed from sample accession ERS1079240 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 2.  This submission includes reads tagged with the sequence GGATTAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_2#87.cram,cram,309356400.0,1546782.0,SC RUN 19850 2#87,0:100 1:100,A:81442981;C:73325873;G:73368663;T:81110081;N:108802,100,100,,,81442981,73325873,73368663,81110081,108802,ERX1513114,ERS1079240,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.966,0.96975,0.11085,0.11412,0.81625,0.81706,0.6001,0.59604,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
3952,ERR1442736,ERX1513113,ERS1079239,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 B,SAMEA3892105,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892105|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:15Z|INSDC status:public|Submitter Id:7503af80 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7503af80 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 2#86,16564974,Illumina sequencing of library 16564974  constructed from sample accession ERS1079239 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 2.  This submission includes reads tagged with the sequence GTTGTCGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_2#86.cram,cram,357707600.0,1788538.0,SC RUN 19850 2#86,0:100 1:100,A:93485940;C:85590637;G:85565243;T:92944872;N:120908,100,100,,,93485940,85590637,85565243,92944872,120908,ERX1513113,ERS1079239,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96703,0.97078,0.10993,0.11268,0.81596,0.81661,0.4358,0.60626,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
4038,ERR1442650,ERX1513027,ERS1079244,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 G,SAMEA3892110,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892110|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7532fce0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 1#90,16564927,Illumina sequencing of library 16564927  constructed from sample accession ERS1079244 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 1.  This submission includes reads tagged with the sequence GCAATCCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_1#90.cram,cram,274905400.0,1374527.0,SC RUN 19850 1#90,0:100 1:100,A:74156011;C:63092972;G:63579884;T:74016061;N:60472,100,100,,,74156011,63092972,63579884,74016061,60472,ERX1513027,ERS1079244,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96797,0.95885,0.12183,0.12328,0.8198,0.82031,0.60068,0.60452,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
4039,ERR1442649,ERX1513026,ERS1079243,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 F,SAMEA3892109,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892109|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:17Z|INSDC status:public|Submitter Id:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7526eef0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 1#89,16564915,Illumina sequencing of library 16564915  constructed from sample accession ERS1079243 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 1.  This submission includes reads tagged with the sequence GTGTGTCG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_1#89.cram,cram,348545200.0,1742726.0,SC RUN 19850 1#89,0:100 1:100,A:93096834;C:81051629;G:81526826;T:92799990;N:69921,100,100,,,93096834,81051629,81526826,92799990,69921,ERX1513026,ERS1079243,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96879,0.96163,0.11954,0.12154,0.81974,0.82071,0.60048,0.40498,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
4040,ERR1442648,ERX1513025,ERS1079241,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 E,SAMEA3892107,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892107|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:751b0810 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:751b0810 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 1#88,16564998,Illumina sequencing of library 16564998  constructed from sample accession ERS1079241 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 1.  This submission includes reads tagged with the sequence GATAGAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_1#88.cram,cram,344050800.0,1720254.0,SC RUN 19850 1#88,0:100 1:100,A:91216092;C:80890293;G:80848768;T:91022379;N:73268,100,100,,,91216092,80890293,80848768,91022379,73268,ERX1513025,ERS1079241,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96487,0.96563,0.13174,0.13502,0.82057,0.82067,0.60354,0.60122,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
4041,ERR1442647,ERX1513024,ERS1079240,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 D,SAMEA3892106,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892106|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:16Z|INSDC status:public|Submitter Id:750f4840 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:750f4840 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 1#87,16564986,Illumina sequencing of library 16564986  constructed from sample accession ERS1079240 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 1.  This submission includes reads tagged with the sequence GGATTAGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_1#87.cram,cram,309692400.0,1548462.0,SC RUN 19850 1#87,0:100 1:100,A:81564704;C:73408944;G:73475164;T:81181091;N:62497,100,100,,,81564704,73408944,73475164,81181091,62497,ERX1513024,ERS1079240,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9656,0.96949,0.11053,0.11317,0.8154,0.81629,0.60019,0.59208,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
4042,ERR1442646,ERX1513023,ERS1079239,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 133 B,SAMEA3892105,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Zygote:1 cell   ZFS:0000001|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892105|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:15Z|INSDC status:public|Submitter Id:7503af80 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7503af80 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19850 1#86,16564974,Illumina sequencing of library 16564974  constructed from sample accession ERS1079239 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19850 1.  This submission includes reads tagged with the sequence GTTGTCGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19850_1#86.cram,cram,357902600.0,1789513.0,SC RUN 19850 1#86,0:100 1:100,A:93545963;C:85638026;G:85651846;T:92987348;N:79417,100,100,,,93545963,85638026,85651846,92987348,79417,ERX1513023,ERS1079239,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96751,0.97104,0.1091,0.11151,0.81716,0.81799,0.60553,0.60479,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Zygote,Embryo,Oocyte,Reproductive System
5793,ERR1955208,ERX2020800,ERS1697077,ERP017053,PRJEB15333,Transposon driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution,ena-STUDY-EMBL EUROPEAN BIOINFORMATICS INSTITUTE-07-09-2016-10:25:55:499-247,Other,In order to better understand the features associated with male germline transcription we profiled the RNA expression in a number of germline cell types. These include spermatogonial stem cells  spermatocytes and round spermatids in mouse and spermatocytes in rat. We also profiled the transcription in zebrafish testes. As a consequence it became apparent that transposable elements are driving considerable lncRNA expression in the later stages of spermatogenesis. This is particularly apparent in the case of endogenous retroviruses in rodents.,ENA FIRST PUBLIC:2017 01 31|ENA LAST UPDATE:2017 05 08,,,Transcriptional profiling of zebrafish testes for analysis of conserved repeat element associations,SAMEA104033184,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,ENA FIRST PUBLIC:2017 05 10T17:01:28Z|ENA LAST UPDATE:2017 04 28T10:34:37Z|External Id:SAMEA104033184|INSDC center name:EMBL EUROPEAN BIOINFORMATICS INSTITUTE|INSDC first public:2017 05 10T17:01:28Z|INSDC last update:2017 04 28T10:34:37Z|INSDC status:public|Submitter Id:Zebrafish.Testis 2|common name:zebrafish|sample name:Zebrafish.Testis 2|scientific name:Danio rerio|strain:AB|tissue type:testis,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,ena EXPERIMENT EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 16,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP017053,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2017 05 10|ENA LAST UPDATE:2018 11 16,zebrafish_testis_2.conserved.1.fastq.gz zebrafish_testis_2.conserved.2.fastq.gz,fastq fastq,46555372886.0,230472143.0,ena RUN EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 16,0:101 1:101,A:12260062264;C:10888457642;G:11605642683;T:11637267744;N:163942553,101,101,,,12260062264,10888457642,11605642683,11637267744,163942553,ERX2020800,ERS1697077,ERA904389,EMBL EUROPEAN BIOINFORMATICS INSTITUTE|European Nucleotide Archive,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,2,0.93165,0.92785,0.29822,0.32141,0.71386,0.71971,0.66173,0.63843,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2017-01-31,Undetermined,Undetermined,Gonad,Reproductive System
5794,ERR1955207,ERX2020799,ERS1697076,ERP017053,PRJEB15333,Transposon driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution,ena-STUDY-EMBL EUROPEAN BIOINFORMATICS INSTITUTE-07-09-2016-10:25:55:499-247,Other,In order to better understand the features associated with male germline transcription we profiled the RNA expression in a number of germline cell types. These include spermatogonial stem cells  spermatocytes and round spermatids in mouse and spermatocytes in rat. We also profiled the transcription in zebrafish testes. As a consequence it became apparent that transposable elements are driving considerable lncRNA expression in the later stages of spermatogenesis. This is particularly apparent in the case of endogenous retroviruses in rodents.,ENA FIRST PUBLIC:2017 01 31|ENA LAST UPDATE:2017 05 08,,,Transcriptional profiling of zebrafish testes for analysis of conserved repeat element associations,SAMEA104033183,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,ENA FIRST PUBLIC:2017 05 10T17:01:28Z|ENA LAST UPDATE:2017 04 28T10:34:37Z|External Id:SAMEA104033183|INSDC center name:EMBL EUROPEAN BIOINFORMATICS INSTITUTE|INSDC first public:2017 05 10T17:01:28Z|INSDC last update:2017 04 28T10:34:37Z|INSDC status:public|Submitter Id:Zebrafish.Testis 1|common name:zebrafish|sample name:Zebrafish.Testis 1|scientific name:Danio rerio|strain:AB|tissue type:testis,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,ena EXPERIMENT EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 15,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP017053,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2017 05 10|ENA LAST UPDATE:2018 11 16,zebrafish_testis_1.conserved.1.fastq.gz zebrafish_testis_1.conserved.2.fastq.gz,fastq fastq,41056086708.0,203247954.0,ena RUN EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 15,0:101 1:101,A:10675591750;C:9672762387;G:10139834713;T:10380949257;N:186948601,101,101,,,10675591750,9672762387,10139834713,10380949257,186948601,ERX2020799,ERS1697076,ERA904389,EMBL EUROPEAN BIOINFORMATICS INSTITUTE|European Nucleotide Archive,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,2,0.92308,0.9157,0.30221,0.31293,0.68276,0.68836,0.56114,0.5857,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2017-01-31,Undetermined,Undetermined,Gonad,Reproductive System
9192,ERR223602,ERX198262,ERS164632,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1689746,SC,ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 01 21T17:01:50Z|ENA LAST UPDATE:2018 03 08T15:53:38Z|External Id:SAMEA1689746|INSDC center name:SC|INSDC first public:2013 01 21T17:01:50Z|INSDC last update:2018 03 08T15:53:38Z|INSDC status:public|Submitter Id:oocyte 4 sc 2013 10 01T10:29:01Z 1471965|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyte 4 sc 2013 10 01T10:29:01Z 1471965|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 8527 4#4,5919327,Illumina sequencing of library 5919327  constructed from sample accession ERS164632 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 8527 4.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2013 01 21|ENA LAST UPDATE:2018 11 16,8527_4#4.bam,bam,4501651650.0,30011011.0,SC RUN 8527 4#4,0:75 1:75,A:1178674458;C:1092876888;G:1065584604;T:1161496281;N:3019419,75,75,,,1178674458,1092876888,1065584604,1161496281,3019419,ERX198262,ERS164632,ERA189990,SC,Wellcome Sanger Institute,2,0.94561,0.94664,0.08582,0.08696,0.76138,0.76209,0.53176,0.53048,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-01-21,Zygote,Embryo,Oocyte,Reproductive System
9193,ERR223601,ERX198261,ERS164631,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1689747,SC,ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 01 21T17:01:50Z|ENA LAST UPDATE:2018 03 08T15:54:08Z|External Id:SAMEA1689747|INSDC center name:SC|INSDC first public:2013 01 21T17:01:50Z|INSDC last update:2018 03 08T15:54:08Z|INSDC status:public|Submitter Id:oocyte 3 sc 2013 10 01T10:28:48Z 1471964|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyte 3 sc 2013 10 01T10:28:48Z 1471964|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 8527 4#3,5919326,Illumina sequencing of library 5919326  constructed from sample accession ERS164631 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 8527 4.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2013 01 21|ENA LAST UPDATE:2018 11 16,8527_4#3.bam,bam,5568567900.0,37123786.0,SC RUN 8527 4#3,0:75 1:75,A:1465046903;C:1328645470;G:1303745131;T:1467407999;N:3722397,75,75,,,1465046903,1328645470,1303745131,1467407999,3722397,ERX198261,ERS164631,ERA189990,SC,Wellcome Sanger Institute,2,0.94501,0.94442,0.0444,0.04437,0.75028,0.75142,0.50196,0.5009,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-01-21,Zygote,Embryo,Oocyte,Reproductive System
9194,ERR223600,ERX198260,ERS164630,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1689745,SC,ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 01 21T17:01:50Z|ENA LAST UPDATE:2018 03 08T15:54:21Z|External Id:SAMEA1689745|INSDC center name:SC|INSDC first public:2013 01 21T17:01:50Z|INSDC last update:2018 03 08T15:54:21Z|INSDC status:public|Submitter Id:oocyte 2 sc 2013 10 01T10:28:52Z 1471963|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyte 2 sc 2013 10 01T10:28:52Z 1471963|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 8527 4#2,5919325,Illumina sequencing of library 5919325  constructed from sample accession ERS164630 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 8527 4.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2013 01 21|ENA LAST UPDATE:2018 11 16,8527_4#2.bam,bam,9763542150.0,65090281.0,SC RUN 8527 4#2,0:75 1:75,A:2562287706;C:2331596084;G:2286050048;T:2577061123;N:6547189,75,75,,,2562287706,2331596084,2286050048,2577061123,6547189,ERX198260,ERS164630,ERA189990,SC,Wellcome Sanger Institute,2,0.94483,0.94307,0.03225,0.03213,0.75164,0.75248,0.48826,0.48786,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-01-21,Zygote,Embryo,Oocyte,Reproductive System
9195,ERR223599,ERX198259,ERS164629,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1689749,SC,ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 01 21T17:01:50Z|ENA LAST UPDATE:2018 03 08T15:53:38Z|External Id:SAMEA1689749|INSDC center name:SC|INSDC first public:2013 01 21T17:01:50Z|INSDC last update:2018 03 08T15:53:38Z|INSDC status:public|Submitter Id:oocyte 1 sc 2013 10 01T10:28:56Z 1471962|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyte 1 sc 2013 10 01T10:28:56Z 1471962|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 8527 4#1,5919324,Illumina sequencing of library 5919324  constructed from sample accession ERS164629 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 8527 4.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2013 01 21|ENA LAST UPDATE:2018 11 16,8527_4#1.bam,bam,5085964200.0,33906428.0,SC RUN 8527 4#1,0:75 1:75,A:1339062677;C:1215755875;G:1185193585;T:1342619451;N:3332612,75,75,,,1339062677,1215755875,1185193585,1342619451,3332612,ERX198259,ERS164629,ERA189990,SC,Wellcome Sanger Institute,2,0.94181,0.94057,0.02819,0.02816,0.76528,0.76589,0.48801,0.48528,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-01-21,Zygote,Embryo,Oocyte,Reproductive System
9197,ERR247040,ERX221574,ERS199652,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1710141,SC,ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 03 25T17:04:29Z|ENA LAST UPDATE:2018 03 08T16:11:05Z|External Id:SAMEA1710141|INSDC center name:SC|INSDC first public:2013 03 25T17:04:29Z|INSDC last update:2018 03 08T16:11:05Z|INSDC status:public|Submitter Id:oocyteFraction strand specific sc 2012 12 18T11:01:05Z 1528879|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyteFraction strand specific sc 2012 12 18T11:01:05Z 1528879|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 9059 1,6378827,Illumina sequencing of library 6378827  constructed from sample accession ERS199652 for study accession ERP001280.,Pre quality controlled,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP001280,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2013 03 25|ENA LAST UPDATE:2018 11 16,9059_1.bam,bam,5753899800.0,19179666.0,SC RUN 9059 1,0:150 1:150,A:1244815314;C:1614707066;G:1630780426;T:1257755311;N:5841683,150,150,,,1244815314,1614707066,1630780426,1257755311,5841683,ERX221574,ERS199652,ERA203591,SC,Wellcome Sanger Institute,2,0.92925,0.92503,0.31746,0.31669,0.86752,0.8714,0.76375,0.7364,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-03-25,Zygote,Embryo,Oocyte,Reproductive System
9198,ERR217291,ERX191956,ERS177087,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1689748,SC,ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 01 09T08:46:36Z|ENA LAST UPDATE:2018 03 08T15:58:37Z|External Id:SAMEA1689748|INSDC center name:SC|INSDC first public:2013 01 09T08:46:36Z|INSDC last update:2018 03 08T15:58:37Z|INSDC status:public|Submitter Id:oocyteFraction sc 2012 09 25T08:20:48Z 1484035|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyteFraction sc 2012 09 25T08:20:48Z 1484035|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 8567 1,5956007,Illumina sequencing of library 5956007  constructed from sample accession ERS177087 for study accession ERP001280.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP001280,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2013 01 08|ENA LAST UPDATE:2018 11 16,8567_1.bam,bam,700846400.0,14016928.0,SC RUN 8567 1,0:25 1:25,A:156856071;C:189943304;G:186494044;T:167363835;N:189146,25,25,,,156856071,189943304,186494044,167363835,189146,ERX191956,ERS177087,ERA182300,SC,Wellcome Sanger Institute,2,0.92873,0.92719,0.33189,0.33319,0.87691,0.88361,0.67468,0.67237,25,25,B,B,biological fallback assumption,illumina,miseq,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-01-08,Zygote,Embryo,Oocyte,Reproductive System
11399,ERR573450,ERX532220,ERS431107,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444568,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444568|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919822|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CTTGTACT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919822|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#12,9907558,Illumina sequencing of library 9907558  constructed from sample accession ERS431107 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence CTTGTACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#12.cram,cram,650186196.0,4925653.0,SC RUN 12780 2#12,0:75 1:57,A:198560783;C:115580503;G:114032117;T:209420318;N:12592475,75,57,,,198560783,115580503,114032117,209420318,12592475,ERX532220,ERS431107,ERA340772,SC,Wellcome Sanger Institute,2,0.78647,0.06669,0.02926,0.0112,0.85064,0.97431,0.84336,0.84061,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11400,ERR573449,ERX532219,ERS431106,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444567,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444567|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919821|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GGCTACAG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919821|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#11,9907557,Illumina sequencing of library 9907557  constructed from sample accession ERS431106 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence GGCTACAG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#11.cram,cram,549446964.0,4162477.0,SC RUN 12780 2#11,0:75 1:57,A:163838700;C:98149189;G:96793504;T:179982523;N:10683048,75,57,,,163838700,98149189,96793504,179982523,10683048,ERX532219,ERS431106,ERA340772,SC,Wellcome Sanger Institute,2,0.76412,0.07382,0.0424,0.01354,0.8295,0.9711,0.74271,0.79164,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11401,ERR573448,ERX532218,ERS431105,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444566,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444566|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919820|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TAGCTTGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919820|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#10,9907556,Illumina sequencing of library 9907556  constructed from sample accession ERS431105 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence TAGCTTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#10.cram,cram,586547544.0,4443542.0,SC RUN 12780 2#10,0:75 1:57,A:177436547;C:103345736;G:103704110;T:190942186;N:11118965,75,57,,,177436547,103345736,103704110,190942186,11118965,ERX532218,ERS431105,ERA340772,SC,Wellcome Sanger Institute,2,0.74998,0.0811,0.0405,0.01459,0.83818,0.9713,0.76069,0.82754,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11402,ERR573447,ERX532217,ERS431104,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444565,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444565|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919819|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GATCAGCG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919819|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#9,9907555,Illumina sequencing of library 9907555  constructed from sample accession ERS431104 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence GATCAGCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#9.cram,cram,432315576.0,3275118.0,SC RUN 12780 2#9,0:75 1:57,A:125670509;C:76069749;G:79204404;T:143041262;N:8329652,75,57,,,125670509,76069749,79204404,143041262,8329652,ERX532217,ERS431104,ERA340772,SC,Wellcome Sanger Institute,2,0.7937,0.09715,0.06324,0.02353,0.81416,0.9666,0.67184,0.7568,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11403,ERR573446,ERX532216,ERS431103,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444564,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444564|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919818|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ACTTGATG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919818|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#8,9907554,Illumina sequencing of library 9907554  constructed from sample accession ERS431103 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence ACTTGATG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#8.cram,cram,634513968.0,4806924.0,SC RUN 12780 2#8,0:75 1:57,A:191583244;C:112011649;G:110647017;T:208010330;N:12261728,75,57,,,191583244,112011649,110647017,208010330,12261728,ERX532216,ERS431103,ERA340772,SC,Wellcome Sanger Institute,2,0.76842,0.07425,0.04471,0.01661,0.83191,0.97177,0.74527,0.7838,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11404,ERR573445,ERX532215,ERS431102,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444563,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444563|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919817|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CAGATCTG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919817|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#7,9907553,Illumina sequencing of library 9907553  constructed from sample accession ERS431102 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence CAGATCTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#7.cram,cram,529421640.0,4010770.0,SC RUN 12780 2#7,0:75 1:57,A:157284974;C:93721720;G:94294422;T:174054157;N:10066367,75,57,,,157284974,93721720,94294422,174054157,10066367,ERX532215,ERS431102,ERA340772,SC,Wellcome Sanger Institute,2,0.76842,0.08469,0.05354,0.02047,0.827,0.96948,0.73126,0.78711,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11405,ERR573444,ERX532214,ERS431101,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444562,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444562|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919816|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GCCAATGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919816|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#6,9907552,Illumina sequencing of library 9907552  constructed from sample accession ERS431101 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence GCCAATGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#6.cram,cram,486628692.0,3686581.0,SC RUN 12780 2#6,0:75 1:57,A:144305837;C:84311114;G:87382505;T:161179806;N:9449430,75,57,,,144305837,84311114,87382505,161179806,9449430,ERX532214,ERS431101,ERA340772,SC,Wellcome Sanger Institute,2,0.75492,0.08763,0.05943,0.02467,0.82605,0.97106,0.73066,0.78416,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11406,ERR573443,ERX532213,ERS431100,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444561,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444561|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919815|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ACAGTGGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919815|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#5,9907551,Illumina sequencing of library 9907551  constructed from sample accession ERS431100 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence ACAGTGGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#5.cram,cram,434346528.0,3290504.0,SC RUN 12780 2#5,0:75 1:57,A:130606283;C:75668370;G:76854195;T:142733687;N:8483993,75,57,,,130606283,75668370,76854195,142733687,8483993,ERX532213,ERS431100,ERA340772,SC,Wellcome Sanger Institute,2,0.73502,0.08212,0.05107,0.02177,0.83319,0.97319,0.75608,0.78055,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11407,ERR573442,ERX532212,ERS431099,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444560,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444560|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919814|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TGACCACT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919814|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#4,9907550,Illumina sequencing of library 9907550  constructed from sample accession ERS431099 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence TGACCACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#4.cram,cram,582567480.0,4413390.0,SC RUN 12780 2#4,0:75 1:57,A:172199820;C:102401712;G:105588046;T:191114176;N:11263726,75,57,,,172199820,102401712,105588046,191114176,11263726,ERX532212,ERS431099,ERA340772,SC,Wellcome Sanger Institute,2,0.77445,0.0772,0.04947,0.01892,0.83155,0.97331,0.76537,0.81314,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11408,ERR573441,ERX532211,ERS431098,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444559,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444559|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919813|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TTAGGCAT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919813|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#3,9907549,Illumina sequencing of library 9907549  constructed from sample accession ERS431098 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence TTAGGCAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#3.cram,cram,418546128.0,3170804.0,SC RUN 12780 2#3,0:75 1:57,A:126035986;C:73630368;G:74294092;T:136405774;N:8179908,75,57,,,126035986,73630368,74294092,136405774,8179908,ERX532211,ERS431098,ERA340772,SC,Wellcome Sanger Institute,2,0.74027,0.07644,0.04632,0.01645,0.83678,0.97268,0.28642,0.81578,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11409,ERR573440,ERX532210,ERS431097,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444558,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:18Z|External Id:SAMEA2444558|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:18Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919812|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CGATGTTT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919812|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#2,9907548,Illumina sequencing of library 9907548  constructed from sample accession ERS431097 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence CGATGTTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#2.cram,cram,566231292.0,4289631.0,SC RUN 12780 2#2,0:75 1:57,A:172561187;C:99465885;G:100279317;T:182857908;N:11066995,75,57,,,172561187,99465885,100279317,182857908,11066995,ERX532210,ERS431097,ERA340772,SC,Wellcome Sanger Institute,2,0.73628,0.0719,0.04526,0.01748,0.8409,0.97396,0.78089,0.79994,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11410,ERR573439,ERX532209,ERS431096,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444557,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T16:22:51Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444557|INSDC center name:SC|INSDC first public:2014 07 23T16:22:51Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919811|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ATCACGTT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919811|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 2#1,9907547,Illumina sequencing of library 9907547  constructed from sample accession ERS431096 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 2.  This submission includes reads tagged with the sequence ATCACGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_2#1.cram,cram,558495036.0,4231023.0,SC RUN 12780 2#1,0:75 1:57,A:166379866;C:98567486;G:99036358;T:183804488;N:10706838,75,57,,,166379866,98567486,99036358,183804488,10706838,ERX532209,ERS431096,ERA340772,SC,Wellcome Sanger Institute,2,0.78243,0.07302,0.04903,0.01801,0.83226,0.97273,0.29206,0.7973,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11423,ERR573426,ERX532196,ERS431107,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444568,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444568|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919822|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CTTGTACT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919822|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#12,9907558,Illumina sequencing of library 9907558  constructed from sample accession ERS431107 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence CTTGTACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#12.cram,cram,654778344.0,4960442.0,SC RUN 12780 1#12,0:75 1:57,A:199961179;C:116391535;G:114824807;T:212851466;N:10749357,75,57,,,199961179,116391535,114824807,212851466,10749357,ERX532196,ERS431107,ERA340772,SC,Wellcome Sanger Institute,2,0.74507,0.06932,0.03573,0.01136,0.85027,0.97313,0.79723,0.84985,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11424,ERR573425,ERX532195,ERS431106,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444567,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444567|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919821|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GGCTACAG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919821|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#11,9907557,Illumina sequencing of library 9907557  constructed from sample accession ERS431106 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence GGCTACAG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#11.cram,cram,552668028.0,4186879.0,SC RUN 12780 1#11,0:75 1:57,A:164846379;C:98733933;G:97317366;T:182667385;N:9102965,75,57,,,164846379,98733933,97317366,182667385,9102965,ERX532195,ERS431106,ERA340772,SC,Wellcome Sanger Institute,2,0.76181,0.07914,0.04128,0.0144,0.83013,0.96897,0.74524,0.78224,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11425,ERR573424,ERX532194,ERS431105,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444566,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444566|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919820|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TAGCTTGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919820|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#10,9907556,Illumina sequencing of library 9907556  constructed from sample accession ERS431105 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence TAGCTTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#10.cram,cram,589676736.0,4467248.0,SC RUN 12780 1#10,0:75 1:57,A:178387736;C:103918537;G:104224904;T:193658136;N:9487423,75,57,,,178387736,103918537,104224904,193658136,9487423,ERX532194,ERS431105,ERA340772,SC,Wellcome Sanger Institute,2,0.74908,0.08524,0.04,0.01437,0.8378,0.96924,0.75837,0.81424,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11426,ERR573423,ERX532193,ERS431104,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444565,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444565|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919819|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GATCAGCG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919819|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#9,9907555,Illumina sequencing of library 9907555  constructed from sample accession ERS431104 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence GATCAGCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#9.cram,cram,434687352.0,3293086.0,SC RUN 12780 1#9,0:75 1:57,A:126325992;C:76537956;G:79653493;T:145073554;N:7096357,75,57,,,126325992,76537956,79653493,145073554,7096357,ERX532193,ERS431104,ERA340772,SC,Wellcome Sanger Institute,2,0.79218,0.10515,0.06403,0.02516,0.81554,0.96516,0.67398,0.75854,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11427,ERR573422,ERX532192,ERS431103,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444564,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444564|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919818|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ACTTGATG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919818|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#8,9907554,Illumina sequencing of library 9907554  constructed from sample accession ERS431103 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence ACTTGATG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#8.cram,cram,638979132.0,4840751.0,SC RUN 12780 1#8,0:75 1:57,A:192909825;C:112805839;G:111453868;T:211361149;N:10448451,75,57,,,192909825,112805839,111453868,211361149,10448451,ERX532192,ERS431103,ERA340772,SC,Wellcome Sanger Institute,2,0.76792,0.07939,0.04571,0.01779,0.83149,0.97159,0.74544,0.78986,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11428,ERR573421,ERX532191,ERS431102,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444563,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444563|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919817|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CAGATCTG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919817|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#7,9907553,Illumina sequencing of library 9907553  constructed from sample accession ERS431102 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence CAGATCTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#7.cram,cram,532095168.0,4031024.0,SC RUN 12780 1#7,0:75 1:57,A:158055606;C:94244016;G:94782105;T:176432826;N:8580615,75,57,,,158055606,94244016,94782105,176432826,8580615,ERX532191,ERS431102,ERA340772,SC,Wellcome Sanger Institute,2,0.7682,0.08982,0.05249,0.02037,0.82873,0.96721,0.7268,0.77896,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11429,ERR573420,ERX532190,ERS431101,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444562,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444562|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919816|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GCCAATGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919816|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#6,9907552,Illumina sequencing of library 9907552  constructed from sample accession ERS431101 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence GCCAATGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#6.cram,cram,489881304.0,3711222.0,SC RUN 12780 1#6,0:75 1:57,A:145269938;C:84906659;G:87933679;T:163722375;N:8048653,75,57,,,145269938,84906659,87933679,163722375,8048653,ERX532190,ERS431101,ERA340772,SC,Wellcome Sanger Institute,2,0.75436,0.09382,0.05843,0.02595,0.82629,0.96948,0.7281,0.79376,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11430,ERR573419,ERX532189,ERS431100,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444561,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444561|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919815|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ACAGTGGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919815|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#5,9907551,Illumina sequencing of library 9907551  constructed from sample accession ERS431100 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence ACAGTGGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#5.cram,cram,437026920.0,3310810.0,SC RUN 12780 1#5,0:75 1:57,A:131416104;C:76151440;G:77308895;T:144919262;N:7231219,75,57,,,131416104,76151440,77308895,144919262,7231219,ERX532189,ERS431100,ERA340772,SC,Wellcome Sanger Institute,2,0.73572,0.08868,0.05166,0.02301,0.83402,0.97112,0.75407,0.784,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11431,ERR573418,ERX532188,ERS431099,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444560,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444560|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919814|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TGACCACT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919814|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#4,9907550,Illumina sequencing of library 9907550  constructed from sample accession ERS431099 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence TGACCACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#4.cram,cram,585274536.0,4433898.0,SC RUN 12780 1#4,0:75 1:57,A:173020599;C:102926893;G:106068831;T:193675894;N:9582319,75,57,,,173020599,102926893,106068831,193675894,9582319,ERX532188,ERS431099,ERA340772,SC,Wellcome Sanger Institute,2,0.7739,0.08287,0.05031,0.0203,0.83321,0.97151,0.76806,0.81586,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11432,ERR573417,ERX532187,ERS431098,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444559,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444559|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919813|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TTAGGCAT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919813|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#3,9907549,Illumina sequencing of library 9907549  constructed from sample accession ERS431098 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence TTAGGCAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#3.cram,cram,421320768.0,3191824.0,SC RUN 12780 1#3,0:75 1:57,A:126882438;C:74124163;G:74793703;T:138548372;N:6972092,75,57,,,126882438,74124163,74793703,138548372,6972092,ERX532187,ERS431098,ERA340772,SC,Wellcome Sanger Institute,2,0.73961,0.08107,0.04649,0.01778,0.83707,0.971,0.76667,0.3852,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11433,ERR573416,ERX532186,ERS431097,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444558,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:18Z|External Id:SAMEA2444558|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:18Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919812|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CGATGTTT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919812|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#2,9907548,Illumina sequencing of library 9907548  constructed from sample accession ERS431097 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence CGATGTTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#2.cram,cram,568896240.0,4309820.0,SC RUN 12780 1#2,0:75 1:57,A:173367419;C:99949404;G:100711583;T:185441801;N:9426033,75,57,,,173367419,99949404,100711583,185441801,9426033,ERX532186,ERS431097,ERA340772,SC,Wellcome Sanger Institute,2,0.73933,0.07666,0.04615,0.01873,0.84449,0.97143,0.78045,0.81201,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11434,ERR573415,ERX532185,ERS431096,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444557,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T16:22:51Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444557|INSDC center name:SC|INSDC first public:2014 07 23T16:22:51Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919811|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ATCACGTT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919811|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12780 1#1,9907547,Illumina sequencing of library 9907547  constructed from sample accession ERS431096 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12780 1.  This submission includes reads tagged with the sequence ATCACGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 08 04|ENA LAST UPDATE:2018 11 16,12780_1#1.cram,cram,561408276.0,4253093.0,SC RUN 12780 1#1,0:75 1:57,A:167257802;C:99072946;G:99537162;T:186409516;N:9130850,75,57,,,167257802,99072946,99537162,186409516,9130850,ERX532185,ERS431096,ERA340772,SC,Wellcome Sanger Institute,2,0.78234,0.07725,0.04864,0.01803,0.8324,0.97106,0.76276,0.80786,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11447,ERR569509,ERX528498,ERS431107,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444568,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444568|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919822|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CTTGTACT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919822|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#12,9907558,Illumina sequencing of library 9907558  constructed from sample accession ERS431107 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence CTTGTACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#12.cram,cram,982461744.0,7442892.0,SC RUN 12667 2#12,0:75 1:57,A:296481362;C:179307177;G:177971204;T:242584851;N:86117150,75,57,,,296481362,179307177,177971204,242584851,86117150,ERX528498,ERS431107,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11448,ERR569508,ERX528497,ERS431106,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444567,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444567|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919821|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GGCTACAG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919821|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#11,9907557,Illumina sequencing of library 9907557  constructed from sample accession ERS431106 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence GGCTACAG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#11.cram,cram,819880908.0,6211219.0,SC RUN 12667 2#11,0:75 1:57,A:239945288;C:149495771;G:150744824;T:207841296;N:71853729,75,57,,,239945288,149495771,150744824,207841296,71853729,ERX528497,ERS431106,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11449,ERR569507,ERX528496,ERS431105,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444566,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444566|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919820|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TAGCTTGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919820|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#10,9907556,Illumina sequencing of library 9907556  constructed from sample accession ERS431105 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence TAGCTTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#10.cram,cram,867273396.0,6570253.0,SC RUN 12667 2#10,0:75 1:57,A:256525320;C:158066159;G:158327270;T:218444938;N:75909709,75,57,,,256525320,158066159,158327270,218444938,75909709,ERX528496,ERS431105,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11450,ERR569506,ERX528495,ERS431104,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444565,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444565|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919819|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GATCAGCG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919819|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#9,9907555,Illumina sequencing of library 9907555  constructed from sample accession ERS431104 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence GATCAGCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#9.cram,cram,638169972.0,4834621.0,SC RUN 12667 2#9,0:75 1:57,A:178874509;C:115944169;G:121541625;T:165914541;N:55895128,75,57,,,178874509,115944169,121541625,165914541,55895128,ERX528495,ERS431104,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11451,ERR569505,ERX528494,ERS431103,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444564,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444564|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919818|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ACTTGATG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919818|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#8,9907554,Illumina sequencing of library 9907554  constructed from sample accession ERS431103 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence ACTTGATG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#8.cram,cram,956534568.0,7246474.0,SC RUN 12667 2#8,0:75 1:57,A:283108829;C:173218537;G:173900730;T:242479623;N:83826849,75,57,,,283108829,173218537,173900730,242479623,83826849,ERX528494,ERS431103,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11452,ERR569504,ERX528493,ERS431102,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444563,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444563|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919817|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CAGATCTG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919817|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#7,9907553,Illumina sequencing of library 9907553  constructed from sample accession ERS431102 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence CAGATCTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#7.cram,cram,802586532.0,6080201.0,SC RUN 12667 2#7,0:75 1:57,A:233541667;C:144624483;G:149025771;T:205115198;N:70279413,75,57,,,233541667,144624483,149025771,205115198,70279413,ERX528493,ERS431102,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11453,ERR569503,ERX528492,ERS431101,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444562,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444562|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919816|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GCCAATGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919816|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#6,9907552,Illumina sequencing of library 9907552  constructed from sample accession ERS431101 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence GCCAATGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#6.cram,cram,733241256.0,5554858.0,SC RUN 12667 2#6,0:75 1:57,A:211104317;C:130864541;G:136777935;T:190226993;N:64267470,75,57,,,211104317,130864541,136777935,190226993,64267470,ERX528492,ERS431101,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11454,ERR569502,ERX528491,ERS431100,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444561,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444561|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919815|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ACAGTGGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919815|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#5,9907551,Illumina sequencing of library 9907551  constructed from sample accession ERS431100 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence ACAGTGGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#5.cram,cram,645745716.0,4892013.0,SC RUN 12667 2#5,0:75 1:57,A:189090784;C:116092712;G:119494272;T:164458997;N:56608951,75,57,,,189090784,116092712,119494272,164458997,56608951,ERX528491,ERS431100,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11455,ERR569501,ERX528490,ERS431099,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444560,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444560|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919814|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TGACCACT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919814|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#4,9907550,Illumina sequencing of library 9907550  constructed from sample accession ERS431099 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence TGACCACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#4.cram,cram,882264768.0,6683824.0,SC RUN 12667 2#4,0:75 1:57,A:255531040;C:159252879;G:165939493;T:224224246;N:77317110,75,57,,,255531040,159252879,165939493,224224246,77317110,ERX528490,ERS431099,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11456,ERR569500,ERX528489,ERS431098,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444559,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444559|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919813|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TTAGGCAT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919813|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#3,9907549,Illumina sequencing of library 9907549  constructed from sample accession ERS431098 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence TTAGGCAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#3.cram,cram,632041476.0,4788193.0,SC RUN 12667 2#3,0:75 1:57,A:186766977;C:113872733;G:116558958;T:159420645;N:55422163,75,57,,,186766977,113872733,116558958,159420645,55422163,ERX528489,ERS431098,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11457,ERR569499,ERX528488,ERS431097,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444558,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:18Z|External Id:SAMEA2444558|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:18Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919812|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CGATGTTT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919812|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#2,9907548,Illumina sequencing of library 9907548  constructed from sample accession ERS431097 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence CGATGTTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#2.cram,cram,844857288.0,6400434.0,SC RUN 12667 2#2,0:75 1:57,A:252606194;C:152622733;G:154830520;T:210725305;N:74072536,75,57,,,252606194,152622733,154830520,210725305,74072536,ERX528488,ERS431097,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11458,ERR569498,ERX528487,ERS431096,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444557,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T16:22:51Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444557|INSDC center name:SC|INSDC first public:2014 07 23T16:22:51Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919811|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence ATCACGTT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919811|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 2#1,9907547,Illumina sequencing of library 9907547  constructed from sample accession ERS431096 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 2.  This submission includes reads tagged with the sequence ATCACGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_2#1.cram,cram,854419632.0,6472876.0,SC RUN 12667 2#1,0:75 1:57,A:249971280;C:155387886;G:157247396;T:216942080;N:74870990,75,57,,,249971280,155387886,157247396,216942080,74870990,ERX528487,ERS431096,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11471,ERR569485,ERX528474,ERS431107,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444568,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444568|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919822|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence CTTGTACT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919822|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 1#12,9907558,Illumina sequencing of library 9907558  constructed from sample accession ERS431107 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 1.  This submission includes reads tagged with the sequence CTTGTACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_1#12.cram,cram,973526928.0,7375204.0,SC RUN 12667 1#12,,,,,,,,,,,,ERX528474,ERS431107,ERA335056,SC,Wellcome Sanger Institute,2,0.71562,0.0,0.03456,0.0,0.84516,1.0,0.79921,,75,57,B,T,mate2 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11472,ERR569484,ERX528473,ERS431106,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444567,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:24:27Z|External Id:SAMEA2444567|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:24:27Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919821|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GGCTACAG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919821|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 1#11,9907557,Illumina sequencing of library 9907557  constructed from sample accession ERS431106 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 1.  This submission includes reads tagged with the sequence GGCTACAG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_1#11.cram,cram,813181644.0,6160467.0,SC RUN 12667 1#11,0:75 1:57,A:238848827;C:149020215;G:147541215;T:207304748;N:70466639,75,57,,,238848827,149020215,147541215,207304748,70466639,ERX528473,ERS431106,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11473,ERR569483,ERX528472,ERS431105,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444566,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:26Z|External Id:SAMEA2444566|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:26Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919820|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence TAGCTTGT is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919820|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 1#10,9907556,Illumina sequencing of library 9907556  constructed from sample accession ERS431105 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 1.  This submission includes reads tagged with the sequence TAGCTTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_1#10.cram,cram,861606900.0,6527325.0,SC RUN 12667 1#10,0:75 1:57,A:256020295;C:157619732;G:155401345;T:217997809;N:74567719,75,57,,,256020295,157619732,155401345,217997809,74567719,ERX528472,ERS431105,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System
11474,ERR569482,ERX528471,ERS431104,ERP005516,PRJEB6054,Baseline expression from transcriptional profiling of zebrafish developmental stages,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages-sc-3053,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,,,,,SAMEA2444565,SC,ArrayExpress DevelopmentalStage:ZFS:0000001|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 07 23T17:01:06Z|ENA LAST UPDATE:2018 03 08T17:20:17Z|External Id:SAMEA2444565|INSDC center name:SC|INSDC first public:2014 07 23T17:01:06Z|INSDC last update:2018 03 08T17:20:17Z|INSDC status:public|Submitter Id:wild type 0hpf sc 1919819|common name:zebrafish|sample description:3 prime end enriched mRNA from wild type zebrafish embryo pools collected at zygote   1 cell stage 0 hpf. A 8 base indexing sequence GATCAGCG is bases 11 to 18 of non index read 2 followed by CG and polyT.|sample name:wild type 0hpf sc 1919819|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 12667 1#9,9907555,Illumina sequencing of library 9907555  constructed from sample accession ERS431104 for study accession ERP005516.  This is part of an Illumina multiplexed sequencing run 12667 1.  This submission includes reads tagged with the sequence GATCAGCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP005516,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 07 23|ENA LAST UPDATE:2018 11 16,12667_1#9.cram,cram,633237528.0,4797254.0,SC RUN 12667 1#9,0:75 1:57,A:178580440;C:115465234;G:119070608;T:165285380;N:54835866,75,57,,,178580440,115465234,119070608,165285380,54835866,ERX528471,ERS431104,ERA335056,SC,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-07-23,Zygote,Embryo,Oocyte,Reproductive System