rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
31610,SRR28480662,SRX24083226,SRS20872880,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 10bp,,zebrafish C11 65.25% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 10bp,sccp22,sccp22,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_010.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115996940.0,1032044.0,IonXpress 010.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.40,A:27435635;C:30752569;G:30166368;T:27642368;N:0,112,,,,27435635,30752569,30166368,27642368,0,SRX24083226,SRS20872880,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31611,SRR28480663,SRX24083225,SRS20872879,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 100bp,,zebrafish C11 65.25% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 100bp,sccp21,sccp21,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_009.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,93043813.0,828468.0,IonXpress 009.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.31,A:21877681;C:24819986;G:24178228;T:22167918;N:0,112,,,,21877681,24819986,24178228,22167918,0,SRX24083225,SRS20872879,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31612,SRR28480664,SRX24083224,SRS20872878,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 1,,zebrafish control 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 1,CK1,CK1,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_008.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,103344731.0,919663.0,IonXpress 008.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.37,A:24335657;C:27548197;G:27080320;T:24380557;N:0,112,,,,24335657,27548197,27080320,24380557,0,SRX24083224,SRS20872878,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31613,SRR28480665,SRX24083223,SRS20872877,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 8,,zebrafish control 8,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 8|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 8,CK8,CK8,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_064.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,1248739.0,12382.0,IonXpress 064.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:100.85,A:343287;C:282561;G:276446;T:346445;N:0,100,,,,343287,282561,276446,346445,0,SRX24083223,SRS20872877,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31614,SRR28480666,SRX24083222,SRS20872875,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.0001bp,,zebrafish C11H18Cl6 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.0001bp,sccp87,sccp87,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_063.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,85118924.0,764363.0,IonXpress 063.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.36,A:20271638;C:22447929;G:22188225;T:20211132;N:0,111,,,,20271638,22447929,22188225,20211132,0,SRX24083222,SRS20872875,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31615,SRR28480667,SRX24083221,SRS20872876,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.001bp,,zebrafish C11H18Cl6 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.001bp,sccp86,sccp86,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_062.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100020739.0,887080.0,IonXpress 062.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.75,A:23887649;C:26321654;G:25886408;T:23925028;N:0,112,,,,23887649,26321654,25886408,23925028,0,SRX24083221,SRS20872876,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31616,SRR28480668,SRX24083220,SRS20872873,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.01bp,,zebrafish C11H18Cl6 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.01bp,sccp85,sccp85,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_061.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97468627.0,871705.0,IonXpress 061.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.81,A:23208366;C:25629536;G:25319083;T:23311642;N:0,111,,,,23208366,25629536,25319083,23311642,0,SRX24083220,SRS20872873,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31617,SRR28480669,SRX24083219,SRS20872874,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.0001bp,,zebrafish C10 65.02% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.0001bp,sccp17,sccp17,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_007.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,98520761.0,872099.0,IonXpress 007.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.97,A:23295910;C:26225214;G:25736839;T:23262798;N:0,112,,,,23295910,26225214,25736839,23262798,0,SRX24083219,SRS20872874,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31618,SRR28480670,SRX24083218,SRS20872872,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.1bp,,zebrafish C11H18Cl6 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.1bp,sccp84,sccp84,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_060.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101362655.0,911931.0,IonXpress 060.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.15,A:24332766;C:26520366;G:26180006;T:24329517;N:0,111,,,,24332766,26520366,26180006,24329517,0,SRX24083218,SRS20872872,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31619,SRR28480671,SRX24083217,SRS20872871,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 1bp,,zebrafish C11H18Cl6 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 1bp,sccp83,sccp83,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_059.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100303496.0,903897.0,IonXpress 059.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.97,A:24088149;C:26263021;G:26004101;T:23948225;N:0,110,,,,24088149,26263021,26004101,23948225,0,SRX24083217,SRS20872871,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31620,SRR28480672,SRX24083216,SRS20872870,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 10bp,,zebrafish C11H18Cl6 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 10bp,sccp82,sccp82,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_058.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115137934.0,1041398.0,IonXpress 058.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.56,A:27558871;C:30238935;G:29677704;T:27662424;N:0,110,,,,27558871,30238935,29677704,27662424,0,SRX24083216,SRS20872870,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31621,SRR28480673,SRX24083215,SRS20872868,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 100bp,,zebrafish C11H18Cl6 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 100bp,sccp81,sccp81,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_057.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97024081.0,870349.0,IonXpress 057.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.48,A:23039592;C:25636462;G:25229252;T:23118775;N:0,111,,,,23039592,25636462,25229252,23118775,0,SRX24083215,SRS20872868,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31622,SRR28480674,SRX24083214,SRS20872869,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 7,,zebrafish control 7,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 7|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 7,CK7,CK7,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_056.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102043702.0,904558.0,IonXpress 056.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.81,A:24197994;C:26938896;G:26614626;T:24292186;N:0,112,,,,24197994,26938896,26614626,24292186,0,SRX24083214,SRS20872869,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31623,SRR28480675,SRX24083213,SRS20872867,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.0001bp,,zebrafish C13H20Cl8 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.0001bp,sccp77,sccp77,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_055.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,87029779.0,773209.0,IonXpress 055.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.56,A:20625019;C:22910646;G:22761997;T:20732117;N:0,112,,,,20625019,22910646,22761997,20732117,0,SRX24083213,SRS20872867,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31624,SRR28480676,SRX24083212,SRS20872866,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.001bp,,zebrafish C13H20Cl8 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.001bp,sccp76,sccp76,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_054.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110378504.0,977343.0,IonXpress 054.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.94,A:26221466;C:29150847;G:28715262;T:26290929;N:0,112,,,,26221466,29150847,28715262,26290929,0,SRX24083212,SRS20872866,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31625,SRR28480677,SRX24083211,SRS20872865,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.01bp,,zebrafish C13H20Cl8 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.01bp,sccp75,sccp75,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_053.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,96397023.0,855195.0,IonXpress 053.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.72,A:22971501;C:25417770;G:25009533;T:22998219;N:0,112,,,,22971501,25417770,25009533,22998219,0,SRX24083211,SRS20872865,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31626,SRR28480678,SRX24083210,SRS20872864,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.1bp,,zebrafish C13H20Cl8 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.1bp,sccp74,sccp74,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_052.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,95954965.0,851203.0,IonXpress 052.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.73,A:22986581;C:25153781;G:24711283;T:23103320;N:0,112,,,,22986581,25153781,24711283,23103320,0,SRX24083210,SRS20872864,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31627,SRR28480679,SRX24083209,SRS20872861,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 1bp,,zebrafish C13H20Cl8 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 1bp,sccp73,sccp73,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_051.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102573446.0,908806.0,IonXpress 051.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.87,A:24644043;C:26951588;G:26384474;T:24593341;N:0,112,,,,24644043,26951588,26384474,24593341,0,SRX24083209,SRS20872861,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31628,SRR28480680,SRX24083208,SRS20872862,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.001bp,,zebrafish C10 65.02% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.001bp,sccp16,sccp16,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_006.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108392278.0,960577.0,IonXpress 006.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.84,A:25539867;C:28930494;G:28352601;T:25569316;N:0,112,,,,25539867,28930494,28352601,25569316,0,SRX24083208,SRS20872862,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31629,SRR28480681,SRX24083207,SRS20872863,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 10bp,,zebrafish C13H20Cl8 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 10bp,sccp72,sccp72,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_050.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,3966818.0,36367.0,IonXpress 050.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:109.08,A:964317;C:1025339;G:1008928;T:968234;N:0,109,,,,964317,1025339,1008928,968234,0,SRX24083207,SRS20872863,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31630,SRR28480682,SRX24083206,SRS20872860,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 100bp,,zebrafish C13H20Cl8 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 100bp,sccp71,sccp71,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_049.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109404410.0,969450.0,IonXpress 049.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.85,A:25934260;C:28861104;G:28479919;T:26129127;N:0,112,,,,25934260,28861104,28479919,26129127,0,SRX24083206,SRS20872860,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31631,SRR28480683,SRX24083205,SRS20872859,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 6,,zebrafish control 6,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 6,CK6,CK6,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_048.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110491023.0,978930.0,IonXpress 048.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.87,A:26203210;C:29193121;G:28716928;T:26377764;N:0,112,,,,26203210,29193121,28716928,26377764,0,SRX24083205,SRS20872859,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31632,SRR28480684,SRX24083204,SRS20872858,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.0001bp,,zebrafish C12H18Cl8 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.0001bp,sccp67,sccp67,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_047.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,87051784.0,765553.0,IonXpress 047.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.71,A:20538118;C:22989270;G:22623611;T:20900785;N:0,113,,,,20538118,22989270,22623611,20900785,0,SRX24083204,SRS20872858,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31633,SRR28480685,SRX24083203,SRS20872857,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.001bp,,zebrafish C12H18Cl8 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.001bp,sccp66,sccp66,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_046.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101355324.0,894473.0,IonXpress 046.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.31,A:24063826;C:26807513;G:26239594;T:24244391;N:0,113,,,,24063826,26807513,26239594,24244391,0,SRX24083203,SRS20872857,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31634,SRR28480686,SRX24083202,SRS20872856,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.01bp,,zebrafish C12H18Cl8 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.01bp,sccp65,sccp65,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_045.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,106816865.0,945364.0,IonXpress 045.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.99,A:25408018;C:28284679;G:27734471;T:25389697;N:0,112,,,,25408018,28284679,27734471,25389697,0,SRX24083202,SRS20872856,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31635,SRR28480687,SRX24083201,SRS20872855,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.1bp,,zebrafish C12H18Cl8 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.1bp,sccp64,sccp64,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_044.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,96444077.0,846020.0,IonXpress 044.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:114.00,A:23090892;C:25396368;G:24751151;T:23205666;N:0,114,,,,23090892,25396368,24751151,23205666,0,SRX24083201,SRS20872855,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31636,SRR28480688,SRX24083200,SRS20872854,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 1bp,,zebrafish C12H18Cl8 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 1bp,sccp63,sccp63,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_043.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109842592.0,979956.0,IonXpress 043.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.09,A:26296605;C:28856810;G:28387647;T:26301530;N:0,112,,,,26296605,28856810,28387647,26301530,0,SRX24083200,SRS20872854,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31637,SRR28480689,SRX24083199,SRS20872853,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 10bp,,zebrafish C12H18Cl8 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 10bp,sccp62,sccp62,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_042.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,104749712.0,928387.0,IonXpress 042.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.83,A:24853206;C:27526121;G:27117065;T:25253320;N:0,112,,,,24853206,27526121,27117065,25253320,0,SRX24083199,SRS20872853,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31638,SRR28480690,SRX24083198,SRS20872851,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 100bp,,zebrafish C12H18Cl8 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 100bp,sccp61,sccp61,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_041.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,107104635.0,950614.0,IonXpress 041.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.67,A:25435794;C:28220207;G:27928474;T:25520160;N:0,112,,,,25435794,28220207,27928474,25520160,0,SRX24083198,SRS20872851,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31639,SRR28480691,SRX24083197,SRS20872852,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.01bp,,zebrafish C10 65.02% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.01bp,sccp15,sccp15,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_005.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109950143.0,982487.0,IonXpress 005.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.91,A:25816549;C:29220009;G:28779207;T:26134378;N:0,111,,,,25816549,29220009,28779207,26134378,0,SRX24083197,SRS20872852,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31640,SRR28480692,SRX24083196,SRS20872850,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 5,,zebrafish control 5,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 5,CK5,CK5,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_040.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,122039187.0,1080433.0,IonXpress 040.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.95,A:28853507;C:32430101;G:31750885;T:29004694;N:0,112,,,,28853507,32430101,31750885,29004694,0,SRX24083196,SRS20872850,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31641,SRR28480693,SRX24083195,SRS20872849,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.0001bp,,zebrafish C10 13 63.0% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.0001bp,sccp57,sccp57,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_039.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,88344791.0,788912.0,IonXpress 039.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.98,A:20796976;C:23423614;G:23017973;T:21106228;N:0,111,,,,20796976,23423614,23017973,21106228,0,SRX24083195,SRS20872849,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31642,SRR28480694,SRX24083194,SRS20872848,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.001bp,,zebrafish C10 13 63.0% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.001bp,sccp56,sccp56,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_038.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,98021104.0,864236.0,IonXpress 038.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.42,A:23137220;C:26142070;G:25287236;T:23454578;N:0,113,,,,23137220,26142070,25287236,23454578,0,SRX24083194,SRS20872848,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31643,SRR28480695,SRX24083193,SRS20872847,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.01bp,,zebrafish C10 13 63.0% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.01bp,sccp55,sccp55,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_037.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108199442.0,958837.0,IonXpress 037.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.84,A:25771016;C:28607370;G:28048727;T:25772329;N:0,112,,,,25771016,28607370,28048727,25772329,0,SRX24083193,SRS20872847,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31644,SRR28480696,SRX24083192,SRS20872845,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.1bp,,zebrafish C10 13 63.0% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.1bp,sccp54,sccp54,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_036.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,105458972.0,934128.0,IonXpress 036.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.90,A:24924433;C:27906991;G:27340010;T:25287538;N:0,112,,,,24924433,27906991,27340010,25287538,0,SRX24083192,SRS20872845,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31645,SRR28480697,SRX24083191,SRS20872846,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 1bp,,zebrafish C10 13 63.0% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 1bp,sccp53,sccp53,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_035.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109362618.0,968693.0,IonXpress 035.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.90,A:26005653;C:28896654;G:28371236;T:26089075;N:0,112,,,,26005653,28896654,28371236,26089075,0,SRX24083191,SRS20872846,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31646,SRR28480698,SRX24083190,SRS20872844,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 10bp,,zebrafish C10 13 63.0% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 10bp,sccp52,sccp52,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_034.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,150999296.0,1329642.0,IonXpress 034.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.56,A:35801710;C:39912702;G:39422840;T:35862044;N:0,113,,,,35801710,39912702,39422840,35862044,0,SRX24083190,SRS20872844,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31647,SRR28480699,SRX24083189,SRS20872843,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 100bp,,zebrafish C10 13 63.0% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 100bp,sccp51,sccp51,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_033.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,118326657.0,1050834.0,IonXpress 033.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.60,A:28048191;C:31348902;G:30800438;T:28129126;N:0,112,,,,28048191,31348902,30800438,28129126,0,SRX24083189,SRS20872843,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31648,SRR28480700,SRX24083188,SRS20872842,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 4,,zebrafish control 4,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 4,CK4,CK4,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_032.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108504007.0,962521.0,IonXpress 032.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.73,A:25803971;C:28561460;G:28211351;T:25927225;N:0,112,,,,25803971,28561460,28211351,25927225,0,SRX24083188,SRS20872842,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31649,SRR28480701,SRX24083187,SRS20872841,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.0001bp,,zebrafish C10 13 51.5% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.0001bp,sccp47,sccp47,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_031.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,106852149.0,944612.0,IonXpress 031.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.12,A:25364517;C:28191855;G:27708782;T:25586995;N:0,113,,,,25364517,28191855,27708782,25586995,0,SRX24083187,SRS20872841,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31650,SRR28480702,SRX24083186,SRS20872840,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.1bp,,zebrafish C10 65.02% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.1bp,sccp14,sccp14,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_004.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101091383.0,892906.0,IonXpress 004.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.22,A:23773356;C:26804183;G:26509419;T:24004425;N:0,113,,,,23773356,26804183,26509419,24004425,0,SRX24083186,SRS20872840,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31651,SRR28480703,SRX24083185,SRS20872839,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.001bp,,zebrafish C10 13 51.5% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.001bp,sccp46,sccp46,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_030.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108108886.0,950394.0,IonXpress 030.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.75,A:25735144;C:28605366;G:28028649;T:25739727;N:0,113,,,,25735144,28605366,28028649,25739727,0,SRX24083185,SRS20872839,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31652,SRR28480704,SRX24083184,SRS20872838,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.01bp,,zebrafish C10 13 51.5% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.01bp,sccp45,sccp45,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_029.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102776913.0,895617.0,IonXpress 029.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:114.76,A:24243608;C:27324915;G:26735990;T:24472400;N:0,114,,,,24243608,27324915,26735990,24472400,0,SRX24083184,SRS20872838,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31653,SRR28480705,SRX24083183,SRS20872837,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.1bp,,zebrafish C10 13 51.5% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.1bp,sccp44,sccp44,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_028.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,111374565.0,993365.0,IonXpress 028.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.12,A:26443074;C:29437482;G:29021416;T:26472593;N:0,112,,,,26443074,29437482,29021416,26472593,0,SRX24083183,SRS20872837,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31654,SRR28480706,SRX24083182,SRS20872835,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 1bp,,zebrafish C10 13 51.5% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 1bp,sccp43,sccp43,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_027.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,353606252.0,3115856.0,IonXpress 027.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.49,A:83702877;C:93175606;G:92029314;T:84698455;N:0,113,,,,83702877,93175606,92029314,84698455,0,SRX24083182,SRS20872835,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31655,SRR28480707,SRX24083181,SRS20872836,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 10bp,,zebrafish C10 13 51.5% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 10bp,sccp42,sccp42,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_026.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,111996140.0,1011611.0,IonXpress 026.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.71,A:26580599;C:29481350;G:29122266;T:26811925;N:0,110,,,,26580599,29481350,29122266,26811925,0,SRX24083181,SRS20872836,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31656,SRR28480708,SRX24083180,SRS20872834,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 100bp,,zebrafish C10 13 51.5% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 100bp,sccp41,sccp41,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_025.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,107004692.0,958688.0,IonXpress 025.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.62,A:25315357;C:28424669;G:27858900;T:25405766;N:0,111,,,,25315357,28424669,27858900,25405766,0,SRX24083180,SRS20872834,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31657,SRR28480709,SRX24083179,SRS20872833,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 3,,zebrafish control 3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 3,CK3,CK3,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_024.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115240733.0,1026590.0,IonXpress 024.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.26,A:27141618;C:30563585;G:30140946;T:27394584;N:0,112,,,,27141618,30563585,30140946,27394584,0,SRX24083179,SRS20872833,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31658,SRR28480710,SRX24083178,SRS20872832,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.0001bp,,zebrafish C13 65.18% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.0001bp,sccp37,sccp37,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_023.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,112322500.0,989665.0,IonXpress 023.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.50,A:26507724;C:29696631;G:29314989;T:26803156;N:0,113,,,,26507724,29696631,29314989,26803156,0,SRX24083178,SRS20872832,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31659,SRR28480711,SRX24083177,SRS20872831,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.001bp,,zebrafish C13 65.18% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.001bp,sccp36,sccp36,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_022.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,113636579.0,1004782.0,IonXpress 022.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.10,A:26801369;C:30143688;G:29637971;T:27053551;N:0,113,,,,26801369,30143688,29637971,27053551,0,SRX24083177,SRS20872831,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31660,SRR28480712,SRX24083176,SRS20872830,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.01bp,,zebrafish C13 65.18% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.01bp,sccp35,sccp35,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_021.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,144380281.0,1275186.0,IonXpress 021.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.22,A:34269776;C:38139595;G:37631581;T:34339329;N:0,113,,,,34269776,38139595,37631581,34339329,0,SRX24083176,SRS20872830,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31661,SRR28480713,SRX24083175,SRS20872829,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 1bp,,zebrafish C10 65.02% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 1bp,sccp13,sccp13,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_003.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102583823.0,900891.0,IonXpress 003.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.87,A:24139707;C:27392431;G:26685917;T:24365768;N:0,113,,,,24139707,27392431,26685917,24365768,0,SRX24083175,SRS20872829,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31662,SRR28480714,SRX24083174,SRS20872828,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.1bp,,zebrafish C13 65.18% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.1bp,sccp34,sccp34,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_020.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,124781601.0,1107608.0,IonXpress 020.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.66,A:29614536;C:32815136;G:32647459;T:29704470;N:0,112,,,,29614536,32815136,32647459,29704470,0,SRX24083174,SRS20872828,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31663,SRR28480715,SRX24083173,SRS20872827,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 1bp,,zebrafish C13 65.18% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 1bp,sccp33,sccp33,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_019.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,91354022.0,810962.0,IonXpress 019.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.65,A:21489915;C:24311006;G:23804472;T:21748629;N:0,112,,,,21489915,24311006,23804472,21748629,0,SRX24083173,SRS20872827,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31664,SRR28480716,SRX24083172,SRS20872826,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 10bp,,zebrafish C13 65.18% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 10bp,sccp32,sccp32,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_018.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,99248975.0,882898.0,IonXpress 018.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.41,A:23400094;C:26451591;G:25795741;T:23601549;N:0,112,,,,23400094,26451591,25795741,23601549,0,SRX24083172,SRS20872826,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31665,SRR28480717,SRX24083171,SRS20872825,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 100bp,,zebrafish C13 65.18% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 100bp,sccp31,sccp31,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_017.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,116164616.0,1029965.0,IonXpress 017.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.79,A:27414271;C:30849960;G:30325830;T:27574555;N:0,112,,,,27414271,30849960,30325830,27574555,0,SRX24083171,SRS20872825,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31666,SRR28480718,SRX24083170,SRS20872824,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 2,,zebrafish control 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 2,CK2,CK2,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_016.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97329986.0,867628.0,IonXpress 016.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.18,A:23139609;C:25709723;G:25171947;T:23308707;N:0,112,,,,23139609,25709723,25171947,23308707,0,SRX24083170,SRS20872824,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31667,SRR28480719,SRX24083169,SRS20872823,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.0001bp,,zebrafish C11 65.25% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.0001bp,sccp27,sccp27,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_015.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,95116322.0,857687.0,IonXpress 015.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.90,A:22496457;C:25247529;G:24767207;T:22605129;N:0,110,,,,22496457,25247529,24767207,22605129,0,SRX24083169,SRS20872823,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31668,SRR28480720,SRX24083168,SRS20872822,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.001bp,,zebrafish C11 65.25% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.001bp,sccp26,sccp26,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_014.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100213781.0,882391.0,IonXpress 014.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.57,A:23838109;C:26629449;G:25891916;T:23854307;N:0,113,,,,23838109,26629449,25891916,23854307,0,SRX24083168,SRS20872822,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31669,SRR28480721,SRX24083167,SRS20872820,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.01bp,,zebrafish C11 65.25% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.01bp,sccp25,sccp25,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_013.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110879716.0,991963.0,IonXpress 013.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.78,A:26185034;C:29382954;G:28898661;T:26413067;N:0,111,,,,26185034,29382954,28898661,26413067,0,SRX24083167,SRS20872820,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31670,SRR28480722,SRX24083166,SRS20872821,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.1bp,,zebrafish C11 65.25% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.1bp,sccp24,sccp24,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_012.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,86622071.0,765510.0,IonXpress 012.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.16,A:20617429;C:23040948;G:22479932;T:20483762;N:0,113,,,,20617429,23040948,22479932,20483762,0,SRX24083166,SRS20872821,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31671,SRR28480723,SRX24083165,SRS20872819,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 1bp,,zebrafish C11 65.25% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 1bp,sccp23,sccp23,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_011.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,113129868.0,1006612.0,IonXpress 011.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.39,A:26916610;C:29806008;G:29493716;T:26913534;N:0,112,,,,26916610,29806008,29493716,26913534,0,SRX24083165,SRS20872819,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31672,SRR28480724,SRX24083164,SRS20872818,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 10bp,,zebrafish C10 65.02% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 10bp,sccp12,sccp12,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_002.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102651027.0,912042.0,IonXpress 002.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.55,A:24135735;C:27359201;G:26643032;T:24513059;N:0,112,,,,24135735,27359201,26643032,24513059,0,SRX24083164,SRS20872818,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31673,SRR28480725,SRX24083163,SRS20872817,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 100bp,,zebrafish C10 65.02% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 100bp,sccp11,sccp11,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_001.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,103648935.0,926414.0,IonXpress 001.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.88,A:24562676;C:27487365;G:26982312;T:24616582;N:0,111,,,,24562676,27487365,26982312,24616582,0,SRX24083163,SRS20872817,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
60257,SRR12194979,SRX8707751,SRS6984337,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B15,GSM4666897,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B15,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666897,GSM4666897: adult whole brain B15; Danio rerio; Bisulfite Seq,GSM4666897,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666897,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-1_S19_L001_R1_001.fastq.gz P6-1_S19_L001_R2_001.fastq.gz,fastq fastq,626505630.0,2077251.0,GSM4666897 r1,0:150.88 1:150.72,A:231784841;C:80425574;G:110085227;T:204102624;N:107364,150,150,,,231784841,80425574,110085227,204102624,107364,SRX8707751,SRS6984337,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00014,0.00014,0.00013,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60258,SRR12194980,SRX8707751,SRS6984337,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B15,GSM4666897,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B15,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666897,GSM4666897: adult whole brain B15; Danio rerio; Bisulfite Seq,GSM4666897,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666897,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-1_S19_L002_R1_001.fastq.gz P6-1_S19_L002_R2_001.fastq.gz,fastq fastq,646447345.0,2143304.0,GSM4666897 r2,0:150.88 1:150.73,A:237189853;C:82748065;G:118625007;T:207787390;N:97030,150,150,,,237189853,82748065,118625007,207787390,97030,SRX8707751,SRS6984337,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00023,0.0002,0.00022,0.00019,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60259,SRR12194981,SRX8707751,SRS6984337,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B15,GSM4666897,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B15,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666897,GSM4666897: adult whole brain B15; Danio rerio; Bisulfite Seq,GSM4666897,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666897,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-1_S19_L003_R1_001.fastq.gz P6-1_S19_L003_R2_001.fastq.gz,fastq fastq,603701501.0,2001537.0,GSM4666897 r3,0:150.88 1:150.74,A:223744015;C:77591778;G:105364702;T:196924362;N:76644,150,150,,,223744015,77591778,105364702,196924362,76644,SRX8707751,SRS6984337,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00017,0.00018,0.00016,0.00017,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60260,SRR12194982,SRX8707751,SRS6984337,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B15,GSM4666897,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B15,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666897,GSM4666897: adult whole brain B15; Danio rerio; Bisulfite Seq,GSM4666897,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666897,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-1_S19_L004_R1_001.fastq.gz P6-1_S19_L004_R2_001.fastq.gz,fastq fastq,626999718.0,2078709.0,GSM4666897 r4,0:150.89 1:150.74,A:230679756;C:80184689;G:114353798;T:201714990;N:66485,150,150,,,230679756,80184689,114353798,201714990,66485,SRX8707751,SRS6984337,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00023,0.00014,0.00022,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60261,SRR12194975,SRX8707750,SRS6984338,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B14,GSM4666896,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B14,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666896,GSM4666896: adult whole brain B14; Danio rerio; Bisulfite Seq,GSM4666896,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666896,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-6_S18_L001_R1_001.fastq.gz P5-6_S18_L001_R2_001.fastq.gz,fastq fastq,362632647.0,1202487.0,GSM4666896 r1,0:150.85 1:150.72,A:134187427;C:47593733;G:60920059;T:119870940;N:60488,150,150,,,134187427,47593733,60920059,119870940,60488,SRX8707750,SRS6984338,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00012,0.00018,0.0001,0.00015,0.99997,0.99997,0.0,0.0,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60262,SRR12194976,SRX8707750,SRS6984338,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B14,GSM4666896,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B14,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666896,GSM4666896: adult whole brain B14; Danio rerio; Bisulfite Seq,GSM4666896,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666896,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-6_S18_L002_R2_001.fastq.gz P5-6_S18_L002_R1_001.fastq.gz,fastq fastq,371328815.0,1231316.0,GSM4666896 r2,0:150.85 1:150.72,A:136045457;C:48493148;G:65714953;T:121017397;N:57860,150,150,,,136045457,48493148,65714953,121017397,57860,SRX8707750,SRS6984338,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00017,0.00014,0.00015,1.0,0.99997,,1.0,149,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60263,SRR12194977,SRX8707750,SRS6984338,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B14,GSM4666896,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B14,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666896,GSM4666896: adult whole brain B14; Danio rerio; Bisulfite Seq,GSM4666896,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666896,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-6_S18_L003_R1_001.fastq.gz P5-6_S18_L003_R2_001.fastq.gz,fastq fastq,349651276.0,1159376.0,GSM4666896 r3,0:150.85 1:150.74,A:129571477;C:45879693;G:58514844;T:115645628;N:39634,150,150,,,129571477,45879693,58514844,115645628,39634,SRX8707750,SRS6984338,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00011,0.00018,0.0001,0.00017,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60264,SRR12194978,SRX8707750,SRS6984338,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B14,GSM4666896,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B14,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666896,GSM4666896: adult whole brain B14; Danio rerio; Bisulfite Seq,GSM4666896,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666896,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-6_S18_L004_R1_001.fastq.gz P5-6_S18_L004_R2_001.fastq.gz,fastq fastq,359741298.0,1192811.0,GSM4666896 r4,0:150.85 1:150.74,A:132192036;C:47006274;G:63129910;T:117375509;N:37569,150,150,,,132192036,47006274,63129910,117375509,37569,SRX8707750,SRS6984338,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00017,0.00015,0.00014,0.00014,0.99995,1.0,0.0,,150,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60265,SRR12194971,SRX8707749,SRS6984336,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B16,GSM4666895,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B16,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666895,GSM4666895: adult whole brain B16; Danio rerio; Bisulfite Seq,GSM4666895,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666895,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-2_S20_L001_R1_001.fastq.gz P6-2_S20_L001_R2_001.fastq.gz,fastq fastq,767379925.0,2544544.0,GSM4666895 r1,0:150.86 1:150.72,A:285185142;C:99053157;G:127959880;T:255052821;N:128925,150,150,,,285185142,99053157,127959880,255052821,128925,SRX8707749,SRS6984336,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.0002,0.00014,0.00019,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60266,SRR12194972,SRX8707749,SRS6984336,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B16,GSM4666895,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B16,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666895,GSM4666895: adult whole brain B16; Danio rerio; Bisulfite Seq,GSM4666895,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666895,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-2_S20_L002_R1_001.fastq.gz P6-2_S20_L002_R2_001.fastq.gz,fastq fastq,801048716.0,2656168.0,GSM4666895 r2,0:150.86 1:150.72,A:294948276;C:103019861;G:140485071;T:262473164;N:122344,150,150,,,294948276,103019861,140485071,262473164,122344,SRX8707749,SRS6984336,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00021,0.00014,0.0002,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60267,SRR12194973,SRX8707749,SRS6984336,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B16,GSM4666895,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B16,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666895,GSM4666895: adult whole brain B16; Danio rerio; Bisulfite Seq,GSM4666895,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666895,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-2_S20_L003_R1_001.fastq.gz P6-2_S20_L003_R2_001.fastq.gz,fastq fastq,740955391.0,2456791.0,GSM4666895 r3,0:150.86 1:150.73,A:275837928;C:95675216;G:123037692;T:246311396;N:93159,150,150,,,275837928,95675216,123037692,246311396,93159,SRX8707749,SRS6984336,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00014,0.0003,0.00013,0.00029,1.0,1.0,,,151,150,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60268,SRR12194974,SRX8707749,SRS6984336,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B16,GSM4666895,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B16,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666895,GSM4666895: adult whole brain B16; Danio rerio; Bisulfite Seq,GSM4666895,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666895,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P6-2_S20_L004_R1_001.fastq.gz P6-2_S20_L004_R2_001.fastq.gz,fastq fastq,776243814.0,2573716.0,GSM4666895 r4,0:150.86 1:150.74,A:286702347;C:99810593;G:135079256;T:254574374;N:77244,150,150,,,286702347,99810593,135079256,254574374,77244,SRX8707749,SRS6984336,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00029,0.00021,0.00026,0.0002,0.99997,1.0,0.0,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60269,SRR12194967,SRX8707748,SRS6984335,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B13,GSM4666894,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B13,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666894,GSM4666894: adult whole brain B13; Danio rerio; Bisulfite Seq,GSM4666894,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666894,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-5_S17_L001_R2_001.fastq.gz P5-5_S17_L001_R1_001.fastq.gz,fastq fastq,818338842.0,2713477.0,GSM4666894 r1,0:150.86 1:150.72,A:301830002;C:107389155;G:139489598;T:269496153;N:133934,150,150,,,301830002,107389155,139489598,269496153,133934,SRX8707748,SRS6984335,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00019,0.00014,0.00018,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60270,SRR12194968,SRX8707748,SRS6984335,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B13,GSM4666894,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B13,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666894,GSM4666894: adult whole brain B13; Danio rerio; Bisulfite Seq,GSM4666894,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666894,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-5_S17_L002_R1_001.fastq.gz P5-5_S17_L002_R2_001.fastq.gz,fastq fastq,846228975.0,2805930.0,GSM4666894 r2,0:150.86 1:150.72,A:308870822;C:110466773;G:152421867;T:274347549;N:121964,150,150,,,308870822,110466773,152421867,274347549,121964,SRX8707748,SRS6984335,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.0002,0.00015,0.00018,0.00011,0.99997,0.99997,0.0,1.0,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60271,SRR12194969,SRX8707748,SRS6984335,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B13,GSM4666894,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B13,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666894,GSM4666894: adult whole brain B13; Danio rerio; Bisulfite Seq,GSM4666894,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666894,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-5_S17_L003_R2_001.fastq.gz P5-5_S17_L003_R1_001.fastq.gz,fastq fastq,790658387.0,2621591.0,GSM4666894 r3,0:150.86 1:150.73,A:292027450;C:103748394;G:134258887;T:260520383;N:103273,150,150,,,292027450,103748394,134258887,260520383,103273,SRX8707748,SRS6984335,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00016,0.00014,0.00013,0.00013,0.99995,1.0,0.0,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60272,SRR12194970,SRX8707748,SRS6984335,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B13,GSM4666894,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B13,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666894,GSM4666894: adult whole brain B13; Danio rerio; Bisulfite Seq,GSM4666894,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666894,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-5_S17_L004_R1_001.fastq.gz P5-5_S17_L004_R2_001.fastq.gz,fastq fastq,815907660.0,2705210.0,GSM4666894 r4,0:150.86 1:150.74,A:298609755;C:106483104;G:145958694;T:264775944;N:80163,150,150,,,298609755,106483104,145958694,264775944,80163,SRX8707748,SRS6984335,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00029,0.00012,0.00028,0.99997,1.0,0.0,,151,150,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60273,SRR12194963,SRX8707747,SRS6984334,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B12,GSM4666893,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B12,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666893,GSM4666893: adult whole brain B12; Danio rerio; Bisulfite Seq,GSM4666893,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666893,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-4_S16_L001_R1_001.fastq.gz P5-4_S16_L001_R2_001.fastq.gz,fastq fastq,700559459.0,2322745.0,GSM4666893 r1,0:150.89 1:150.72,A:258008915;C:91134331;G:124267705;T:227032496;N:116012,150,150,,,258008915,91134331,124267705,227032496,116012,SRX8707747,SRS6984334,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00013,0.00017,0.00012,0.00016,1.0,1.0,,,151,150,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60274,SRR12194964,SRX8707747,SRS6984334,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B12,GSM4666893,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B12,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666893,GSM4666893: adult whole brain B12; Danio rerio; Bisulfite Seq,GSM4666893,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666893,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-4_S16_L002_R2_001.fastq.gz P5-4_S16_L002_R1_001.fastq.gz,fastq fastq,728622859.0,2415726.0,GSM4666893 r2,0:150.89 1:150.73,A:265918573;C:94480694;G:135330434;T:232783961;N:109197,150,150,,,265918573,94480694,135330434,232783961,109197,SRX8707747,SRS6984334,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00017,0.00022,0.00014,0.00021,0.99995,1.0,0.0,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60275,SRR12194965,SRX8707747,SRS6984334,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B12,GSM4666893,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B12,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666893,GSM4666893: adult whole brain B12; Danio rerio; Bisulfite Seq,GSM4666893,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666893,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-4_S16_L003_R1_001.fastq.gz P5-4_S16_L003_R2_001.fastq.gz,fastq fastq,676046027.0,2241356.0,GSM4666893 r3,0:150.89 1:150.74,A:249345303;C:88016423;G:119300461;T:219299203;N:84637,150,150,,,249345303,88016423,119300461,219299203,84637,SRX8707747,SRS6984334,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00022,0.00024,0.00021,0.00023,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60276,SRR12194966,SRX8707747,SRS6984334,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B12,GSM4666893,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B12,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666893,GSM4666893: adult whole brain B12; Danio rerio; Bisulfite Seq,GSM4666893,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666893,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-4_S16_L004_R1_001.fastq.gz P5-4_S16_L004_R2_001.fastq.gz,fastq fastq,703809171.0,2333304.0,GSM4666893 r4,0:150.89 1:150.75,A:257462138;C:91215734;G:129931298;T:225132059;N:67942,150,150,,,257462138,91215734,129931298,225132059,67942,SRX8707747,SRS6984334,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00022,0.00014,0.00021,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60277,SRR12194959,SRX8707746,SRS6984333,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B11,GSM4666892,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B11,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666892,GSM4666892: adult whole brain B11; Danio rerio; Bisulfite Seq,GSM4666892,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666892,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-3_S15_L001_R1_001.fastq.gz P5-3_S15_L001_R2_001.fastq.gz,fastq fastq,875916606.0,2904546.0,GSM4666892 r1,0:150.85 1:150.72,A:323769382;C:115778670;G:148157089;T:288058377;N:153088,150,150,,,323769382,115778670,148157089,288058377,153088,SRX8707746,SRS6984333,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,9e-05,0.00014,6e-05,1.0,0.99997,,1.0,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60278,SRR12194960,SRX8707746,SRS6984333,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B11,GSM4666892,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B11,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666892,GSM4666892: adult whole brain B11; Danio rerio; Bisulfite Seq,GSM4666892,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666892,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-3_S15_L002_R1_001.fastq.gz P5-3_S15_L002_R2_001.fastq.gz,fastq fastq,906266878.0,3005123.0,GSM4666892 r2,0:150.85 1:150.73,A:331841540;C:119200098;G:161492735;T:293597000;N:135505,150,150,,,331841540,119200098,161492735,293597000,135505,SRX8707746,SRS6984333,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00015,0.00013,0.00012,0.99997,0.99997,0.0,1.0,150,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60279,SRR12194961,SRX8707746,SRS6984333,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B11,GSM4666892,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B11,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666892,GSM4666892: adult whole brain B11; Danio rerio; Bisulfite Seq,GSM4666892,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666892,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-3_S15_L003_R1_001.fastq.gz P5-3_S15_L003_R2_001.fastq.gz,fastq fastq,845425773.0,2803262.0,GSM4666892 r3,0:150.85 1:150.74,A:312923215;C:111769611;G:142528786;T:278100796;N:103365,150,150,,,312923215,111769611,142528786,278100796,103365,SRX8707746,SRS6984333,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00019,0.00017,0.00018,0.00015,1.0,0.99997,,1.0,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60280,SRR12194962,SRX8707746,SRS6984333,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B11,GSM4666892,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B11,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666892,GSM4666892: adult whole brain B11; Danio rerio; Bisulfite Seq,GSM4666892,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666892,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-3_S15_L004_R1_001.fastq.gz P5-3_S15_L004_R2_001.fastq.gz,fastq fastq,879089154.0,2914795.0,GSM4666892 r4,0:150.85 1:150.74,A:322802592;C:115646186;G:155527621;T:285023759;N:88996,150,150,,,322802592,115646186,155527621,285023759,88996,SRX8707746,SRS6984333,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00016,0.00014,0.00013,0.00013,0.99993,1.0,0.0,,151,150,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60281,SRR12194955,SRX8707745,SRS6984332,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B10,GSM4666891,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B10,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666891,GSM4666891: adult whole brain B10; Danio rerio; Bisulfite Seq,GSM4666891,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666891,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-2_S14_L001_R1_001.fastq.gz P5-2_S14_L001_R2_001.fastq.gz,fastq fastq,612289518.0,2030276.0,GSM4666891 r1,0:150.86 1:150.72,A:225461166;C:80840857;G:104624118;T:201255710;N:107667,150,150,,,225461166,80840857,104624118,201255710,107667,SRX8707745,SRS6984332,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00017,0.00021,0.00014,0.00019,0.99995,0.99997,0.5,1.0,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60282,SRR12194956,SRX8707745,SRS6984332,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B10,GSM4666891,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B10,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666891,GSM4666891: adult whole brain B10; Danio rerio; Bisulfite Seq,GSM4666891,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666891,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-2_S14_L002_R1_001.fastq.gz P5-2_S14_L002_R2_001.fastq.gz,fastq fastq,634607694.0,2104258.0,GSM4666891 r2,0:150.86 1:150.73,A:231299105;C:83482957;G:114131270;T:205602870;N:91492,150,150,,,231299105,83482957,114131270,205602870,91492,SRX8707745,SRS6984332,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00028,0.00014,0.00027,0.00013,1.0,1.0,,,150,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60283,SRR12194957,SRX8707745,SRS6984332,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B10,GSM4666891,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B10,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666891,GSM4666891: adult whole brain B10; Danio rerio; Bisulfite Seq,GSM4666891,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666891,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-2_S14_L003_R1_001.fastq.gz P5-2_S14_L003_R2_001.fastq.gz,fastq fastq,590348631.0,1957422.0,GSM4666891 r3,0:150.86 1:150.74,A:217666345;C:77986590;G:100434245;T:194187946;N:73505,150,150,,,217666345,77986590,100434245,194187946,73505,SRX8707745,SRS6984332,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00015,0.00017,0.00014,0.00016,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60284,SRR12194958,SRX8707745,SRS6984332,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B10,GSM4666891,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B10,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666891,GSM4666891: adult whole brain B10; Danio rerio; Bisulfite Seq,GSM4666891,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666891,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-2_S14_L004_R1_001.fastq.gz P5-2_S14_L004_R2_001.fastq.gz,fastq fastq,613280111.0,2033405.0,GSM4666891 r4,0:150.86 1:150.74,A:224142863;C:80650974;G:109510542;T:198916747;N:58985,150,150,,,224142863,80650974,109510542,198916747,58985,SRX8707745,SRS6984332,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00019,0.00015,0.00016,0.00014,0.99995,1.0,0.0,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60285,SRR12194951,SRX8707744,SRS6984331,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B9,GSM4666890,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B9,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666890,GSM4666890: adult whole brain B9; Danio rerio; Bisulfite Seq,GSM4666890,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666890,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-1_S13_L001_R1_001.fastq.gz P5-1_S13_L001_R2_001.fastq.gz,fastq fastq,871269001.0,2888776.0,GSM4666890 r1,0:150.89 1:150.72,A:314795365;C:112414599;G:160314482;T:283594068;N:150487,150,150,,,314795365,112414599,160314482,283594068,150487,SRX8707744,SRS6984331,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00013,0.00015,0.00012,0.00014,1.0,1.0,,,151,150,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60286,SRR12194952,SRX8707744,SRS6984331,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B9,GSM4666890,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B9,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666890,GSM4666890: adult whole brain B9; Danio rerio; Bisulfite Seq,GSM4666890,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666890,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-1_S13_L002_R1_001.fastq.gz P5-1_S13_L002_R2_001.fastq.gz,fastq fastq,902501754.0,2992248.0,GSM4666890 r2,0:150.89 1:150.72,A:322645331;C:115934758;G:174818254;T:288967241;N:136170,150,150,,,322645331,115934758,174818254,288967241,136170,SRX8707744,SRS6984331,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00012,0.00026,0.0001,0.00025,0.99997,1.0,0.0,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60287,SRR12194953,SRX8707744,SRS6984331,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B9,GSM4666890,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B9,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666890,GSM4666890: adult whole brain B9; Danio rerio; Bisulfite Seq,GSM4666890,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666890,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-1_S13_L003_R1_001.fastq.gz P5-1_S13_L003_R2_001.fastq.gz,fastq fastq,839686349.0,2783900.0,GSM4666890 r3,0:150.89 1:150.73,A:303601399;C:108395743;G:153892840;T:273690404;N:105963,150,150,,,303601399,108395743,153892840,273690404,105963,SRX8707744,SRS6984331,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00012,0.00018,0.00011,0.00017,1.0,1.0,,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60288,SRR12194954,SRX8707744,SRS6984331,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B9,GSM4666890,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:female,adult whole brain B9,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:F,GSM4666890,GSM4666890: adult whole brain B9; Danio rerio; Bisulfite Seq,GSM4666890,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666890,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ILLUMINA,NextSeq 550,,SRP271280,,,P5-1_S13_L004_R1_001.fastq.gz P5-1_S13_L004_R2_001.fastq.gz,fastq fastq,872412889.0,2892296.0,GSM4666890 r4,0:150.89 1:150.74,A:312195512;C:111967601;G:168316892;T:279843866;N:89018,150,150,,,312195512,111967601,168316892,279843866,89018,SRX8707744,SRS6984331,SRA1097340,GEO,"UMR MARBEC, INRAE",2,0.00021,0.00034,0.00018,0.00033,0.99995,1.0,0.0,,151,151,T,T,mates < 9% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60289,SRR12194947,SRX8707743,SRS6984330,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B8,GSM4666889,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B8,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666889,GSM4666889: adult whole brain B8; Danio rerio; Bisulfite Seq,GSM4666889,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666889,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,SINGLE,ILLUMINA,NextSeq 550,,SRP271280,,,P4-6_S21_L001_R1_001.fastq.gz,fastq,417626188.0,2629267.0,GSM4666889 r1,0:158.84 1:0,A:125329533;C:27957391;G:102415231;T:161892676;N:31357,158,0,,,125329533,27957391,102415231,161892676,31357,SRX8707743,SRS6984330,SRA1097340,GEO,"UMR MARBEC, INRAE",1,0.00017,,0.00015,,0.99997,,1.0,,158,,T,,under 1.2% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60290,SRR12194948,SRX8707743,SRS6984330,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B8,GSM4666889,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B8,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666889,GSM4666889: adult whole brain B8; Danio rerio; Bisulfite Seq,GSM4666889,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666889,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,SINGLE,ILLUMINA,NextSeq 550,,SRP271280,,,P4-6_S21_L002_R1_001.fastq.gz,fastq,415442115.0,2616087.0,GSM4666889 r2,0:158.80 1:0,A:122606292;C:27299099;G:106611577;T:158894919;N:30228,158,0,,,122606292,27299099,106611577,158894919,30228,SRX8707743,SRS6984330,SRA1097340,GEO,"UMR MARBEC, INRAE",1,8e-05,,7e-05,,1.0,,,,159,,T,,under 1.2% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60291,SRR12194949,SRX8707743,SRS6984330,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B8,GSM4666889,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B8,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666889,GSM4666889: adult whole brain B8; Danio rerio; Bisulfite Seq,GSM4666889,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666889,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,SINGLE,ILLUMINA,NextSeq 550,,SRP271280,,,P4-6_S21_L003_R1_001.fastq.gz,fastq,406171247.0,2557027.0,GSM4666889 r3,0:158.85 1:0,A:122039816;C:27029008;G:99485556;T:157596787;N:20080,158,0,,,122039816,27029008,99485556,157596787,20080,SRX8707743,SRS6984330,SRA1097340,GEO,"UMR MARBEC, INRAE",1,0.00019,,0.00015,,0.99993,,0.5,,159,,T,,under 1.2% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System
60292,SRR12194950,SRX8707743,SRS6984330,SRP271280,PRJNA645421,Epigenomic RRBS analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154206,Other,In the present study  zebrafish were exposed to permethrin during early life  and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity  whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. We performed transcriptomic analyses on whole brains GSE154020  and here  we further performed RRBS analyses to identify whether there was any stable change in DNA methylation that could be linked to the effects observed at other levels of organization. Due to technical issues during sequencing  we had to perform a correction on the raw data CombaT in order to remove a batch effect flow cell. We made sure that this did not create any false positive differentially methylated region. Processed files available are the results from methyl calling before batch correctionwith a min coverage >= 5 per C. A matrix of corrected data is available as supplementary file. Overall design: Reduced representative bisulfite sequencing was performed on males and females from the F0  F1 and F2 generations 4 replicates treatment  4 replicates control for each sex and each generation. Except only 3 treated male F0,,pubmed:33752003,,adult whole brain B8,GSM4666889,,tissue:adult whole brain|strain:AB line|generation:F1|Sex:male,adult whole brain B8,"Adaptor trimming with TrimGalore! Galaxy version 0.4.3.1 Alignment to GRCz11 with Bismark Galaxy version 0.22.1; optimizing alignement with ""L 0  0.6"". Rk due to batch effects described below  PE sequences were analyzed as SE. methyl calling using Bismark extractor  cov >= 5 processed data files batch correction using ComBat see supplementary data corrected matrix.csv identification of DMRs using Methylkit R v1.12; 300 bp tiles with at least 4 C included and >=10% differential methylation Genome build: DanRer11 Supplementary files format and content: methyl call cov >= 5 from bismark methyl extractor.  *.tabular files before correction and corrected matrix.csv post correction",adult whole brain,,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,,strain:AB line|generation:F1|Sex:M,GSM4666889,GSM4666889: adult whole brain B8; Danio rerio; Bisulfite Seq,GSM4666889,,1,Fish were euthanized  brains were dissected and flash frozen in liquid nitrogen  and DNA was extracted using TriPrep extraction kit Macherey Nagel. 300 ng of DNA per sample were sent to the Environmental Epigenetics facility of IHPE  University of Perpignan  France  for pair ended or single ended RRBS,GEO Accession:GSM4666889,Bisulfite-Seq,TRANSCRIPTOMIC,Reduced Representation,SINGLE,ILLUMINA,NextSeq 550,,SRP271280,,,P4-6_S21_L004_R1_001.fastq.gz,fastq,403012952.0,2537671.0,GSM4666889 r4,0:158.81 1:0,A:119320681;C:26563373;G:102739543;T:154371029;N:18326,158,0,,,119320681,26563373,102739543,154371029,18326,SRX8707743,SRS6984330,SRA1097340,GEO,"UMR MARBEC, INRAE",1,0.00016,,0.00015,,1.0,,,,159,,T,,under 1.2% mapping rate,illumina,nextseq,unknown,other,unknown,bulk,unknown,unknown,,France,2020-07-10,Adult,Adult,Brain,Nervous System