rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 45031,SRR6466455,SRX3556412,SRS2829760,SRP128941,PRJNA428924,Danio rerio breed:TU Transcriptome or Gene expression,PRJNA428924,Transcriptome Analysis,In order to know about more basic knowledge of none/less gut adhesive strain L. casei BL23 induce on the developmental profile and immunity education in zebrafish,,,pooled of 15 intestine of juveniles at 35 dpf old.,,Control 35,,breed:TU|age:35 dpf|sex:pooled male and female|tissue:intestine|treatment:Control|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish larvae with or without xxx administration,Ctl 35,Ctl 35,Total RNA were isolated from pooled samples of larvae whole body or juvenile s intestines with TRIzol Tian Gen Beijing China following the manufacturer s specifications. The RNA was treated with amplification grade DNase I 1 U/ g RNA; Invitrogen USA. RNA concentration was measured using Qubit RNA Assay Kit in Qubit 2.0 Flurometer Life Technologies CA USA. RNA integrity was assessed using the RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system Agilent Technologies CA USA. All the RNA RIN values were bigger than 9.5 as analyzed by Bioanalyzer 2100 system. For mRNAseq equal volume and amount 1 g of total RNA from 4 sample pools of each treatment group were mixed as a sequencing sample.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP128941,,,ZFGCK_1.fq.gz ZFGCK_2.fq.gz,fastq fastq,4031784000.0,16127136.0,ZFGCK 2.fq.gz,0:125 1:125,A:1069662566;C:940723613;G:944143624;T:1077192856;N:61341,125,125,,,1069662566,940723613,944143624,1077192856,61341,SRX3556412,SRS2829760,SRA646164,Chinese Academy of Agricultural Sciences|Key Laboratory for Feed Biotechnology of the Minis,Chinese Academy of Agricultural Sciences,2,0.93591,0.9405,0.06779,0.06732,0.72157,0.72372,0.53789,0.52813,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2018-01-12,Juvenile,Juvenile,Gut,Digestive System 45032,SRR6466456,SRX3556411,SRS2829759,SRP128941,PRJNA428924,Danio rerio breed:TU Transcriptome or Gene expression,PRJNA428924,Transcriptome Analysis,In order to know about more basic knowledge of none/less gut adhesive strain L. casei BL23 induce on the developmental profile and immunity education in zebrafish,,,pooled of 15 intestine of juveniles at 35 dpf old with BL23 administration,,BL23 35,,breed:TU|age:35 dpf|sex:pooled male and female|tissue:intestine|treatment:BL23 administration|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish larvae with or without xxx administration,BL23 35,BL23 35,Total RNA were isolated from pooled samples of larvae whole body or juvenile s intestines with TRIzol Tian Gen Beijing China following the manufacturer s specifications. The RNA was treated with amplification grade DNase I 1 U/ g RNA; Invitrogen USA. RNA concentration was measured using Qubit RNA Assay Kit in Qubit 2.0 Flurometer Life Technologies CA USA. RNA integrity was assessed using the RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system Agilent Technologies CA USA. All the RNA RIN values were bigger than 9.5 as analyzed by Bioanalyzer 2100 system. For mRNAseq equal volume and amount 1 g of total RNA from 4 sample pools of each treatment group were mixed as a sequencing sample.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP128941,,,ZFGBL23_1.fq.gz ZFGBL23_2.fq.gz,fastq fastq,3545702250.0,14182809.0,ZFGBL23 1.fq.gz,0:125 1:125,A:931928697;C:835347026;G:838503871;T:939869548;N:53108,125,125,,,931928697,835347026,838503871,939869548,53108,SRX3556411,SRS2829759,SRA646164,Chinese Academy of Agricultural Sciences|Key Laboratory for Feed Biotechnology of the Minis,Chinese Academy of Agricultural Sciences,2,0.94166,0.94611,0.05678,0.05657,0.71652,0.71894,0.51987,0.53609,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2018-01-12,Juvenile,Juvenile,Gut,Digestive System 60007,SRR12109607,SRX8633610,SRS6920345,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drt3,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,F,F,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drt3.fq.gz,fastq,953116651.0,39450392.0,Drt3.fq.gz,0:24.16,A:165275545;C:266933722;G:285524079;T:235383107;N:198,24,,,,165275545,266933722,285524079,235383107,198,SRX8633610,SRS6920345,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.86243,,0.21541,,0.80294,,0.67181,,29,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60008,SRR12109608,SRX8633609,SRS6920344,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drt2,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,E,E,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drt2.fq.gz,fastq,629335361.0,26037543.0,Drt2.fq.gz,0:24.17,A:111827613;C:172564695;G:192159133;T:152783892;N:28,24,,,,111827613,172564695,192159133,152783892,28,SRX8633609,SRS6920344,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.86328,,0.21943,,0.7992,,0.64786,,26,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60009,SRR12109609,SRX8633608,SRS6920343,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drt1,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,D,D,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drt1.fq.gz,fastq,898185854.0,37273958.0,Drt1.fq.gz,0:24.10,A:155257170;C:247725871;G:276963807;T:218238980;N:26,24,,,,155257170,247725871,276963807,218238980,26,SRX8633608,SRS6920343,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.86686,,0.21764,,0.79508,,0.6694,,24,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60010,SRR12109610,SRX8633607,SRS6920342,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drc3,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,C,C,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drc3.fq.gz,fastq,912782161.0,35931507.0,Drc3.fq.gz,0:25.40,A:153448479;C:252628189;G:280829895;T:225874586;N:1012,25,,,,153448479,252628189,280829895,225874586,1012,SRX8633607,SRS6920342,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.89797,,0.21308,,0.80823,,0.62611,,23,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60011,SRR12109611,SRX8633606,SRS6920341,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drc2,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,B,B,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drc2.fq.gz,fastq,784553020.0,31429473.0,Drc2.fq.gz,0:24.96,A:128271350;C:223302609;G:241310233;T:191668193;N:635,24,,,,128271350,223302609,241310233,191668193,635,SRX8633606,SRS6920341,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.9087,,0.20487,,0.80805,,0.67324,,30,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60012,SRR12109612,SRX8633605,SRS6920340,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drc1,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,A,A,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drc1.fq.gz,fastq,814894343.0,32234530.0,Drc1.fq.gz,0:25.28,A:133616147;C:230834630;G:253965304;T:196477437;N:825,25,,,,133616147,230834630,253965304,196477437,825,SRX8633605,SRS6920340,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.89344,,0.21273,,0.80738,,0.66815,,28,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60013,SRR12113706,SRX8636217,SRS6922582,SRP269298,PRJNA641991,Zebrafish intestinal transcriptome,PRJNA641991,Other,The model of streptococcus agalactiae infection in zebrafish was established and transcriptomic analysis of gut was carried out revealing the molecular mechanism of gut as immune organ in antibacterial immunity.,,,,,Drt3,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: adult gut transcriptome,Drt3,Drt3,Analysis of the gut transcriptome zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP269298,,,Drt3_2.fq.gz Drt3_1.fq.gz,fastq fastq,10385620496.0,103857118.0,Drt3 1.fq.gz,0:100.00 1:100.00,A:2795547291;C:2389287059;G:2340067604;T:2856230211;N:4488331,100,100,,,2795547291,2389287059,2340067604,2856230211,4488331,SRX8636217,SRS6922582,SRA1092419,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.93168,,0.05049,,0.70114,,0.47306,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-06-30,Adult,Adult,Gut,Digestive System 60014,SRR12113707,SRX8636216,SRS6922581,SRP269298,PRJNA641991,Zebrafish intestinal transcriptome,PRJNA641991,Other,The model of streptococcus agalactiae infection in zebrafish was established and transcriptomic analysis of gut was carried out revealing the molecular mechanism of gut as immune organ in antibacterial immunity.,,,,,Drt2,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: adult gut transcriptome,Drt2,Drt2,Analysis of the gut transcriptome zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP269298,,,Drt2_2.fq.gz Drt2_1.fq.gz,fastq fastq,10634900220.0,106349898.0,Drt2 1.fq.gz,0:100.00 1:100.00,A:2855552327;C:2453463268;G:2407608134;T:2913982461;N:4294030,100,100,,,2855552327,2453463268,2407608134,2913982461,4294030,SRX8636216,SRS6922581,SRA1092419,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.93248,,0.04904,,0.70076,,0.46882,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-06-30,Adult,Adult,Gut,Digestive System 60015,SRR12113708,SRX8636215,SRS6922580,SRP269298,PRJNA641991,Zebrafish intestinal transcriptome,PRJNA641991,Other,The model of streptococcus agalactiae infection in zebrafish was established and transcriptomic analysis of gut was carried out revealing the molecular mechanism of gut as immune organ in antibacterial immunity.,,,,,Drt1,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: adult gut transcriptome,Drt1,Drt1,Analysis of the gut transcriptome zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP269298,,,Drt1_2.fq.gz Drt1_1.fq.gz,fastq fastq,10389369116.0,103894584.0,Drt1 1.fq.gz,0:100.00 1:100.00,A:2793592266;C:2393469568;G:2344430991;T:2853317287;N:4559004,100,100,,,2793592266,2393469568,2344430991,2853317287,4559004,SRX8636215,SRS6922580,SRA1092419,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.93179,,0.0497,,0.69996,,0.47204,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-06-30,Adult,Adult,Gut,Digestive System 60016,SRR12113709,SRX8636214,SRS6922579,SRP269298,PRJNA641991,Zebrafish intestinal transcriptome,PRJNA641991,Other,The model of streptococcus agalactiae infection in zebrafish was established and transcriptomic analysis of gut was carried out revealing the molecular mechanism of gut as immune organ in antibacterial immunity.,,,,,Drc3,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: adult gut transcriptome,Drc3,Drc3,Analysis of the gut transcriptome zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP269298,,,Drc3_2.fq.gz Drc3_1.fq.gz,fastq fastq,10383694880.0,103837934.0,Drc3 1.fq.gz,0:100.00 1:100.00,A:2753661855;C:2428450083;G:2392575550;T:2804447481;N:4559911,100,100,,,2753661855,2428450083,2392575550,2804447481,4559911,SRX8636214,SRS6922579,SRA1092419,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.93644,,0.04044,,0.72277,,0.40342,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-06-30,Adult,Adult,Gut,Digestive System 60017,SRR12113710,SRX8636213,SRS6922577,SRP269298,PRJNA641991,Zebrafish intestinal transcriptome,PRJNA641991,Other,The model of streptococcus agalactiae infection in zebrafish was established and transcriptomic analysis of gut was carried out revealing the molecular mechanism of gut as immune organ in antibacterial immunity.,,,,,Drc2,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: adult gut transcriptome,Drc2,Drc2,Analysis of the gut transcriptome zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP269298,,,Drc2_2.fq.gz Drc2_1.fq.gz,fastq fastq,10629413816.0,53147498.0,Drc2 1.fq.gz,0:100 1:100.00,A:2828947935;C:2472372395;G:2429622659;T:2893375087;N:5095740,100,100,,,2828947935,2472372395,2429622659,2893375087,5095740,SRX8636213,SRS6922577,SRA1092419,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,2,0.93783,0.93735,0.04114,0.04098,0.71879,0.71944,0.40885,0.40829,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-06-30,Adult,Adult,Gut,Digestive System 60018,SRR12113711,SRX8636212,SRS6922578,SRP269298,PRJNA641991,Zebrafish intestinal transcriptome,PRJNA641991,Other,The model of streptococcus agalactiae infection in zebrafish was established and transcriptomic analysis of gut was carried out revealing the molecular mechanism of gut as immune organ in antibacterial immunity.,,,,,Drc1,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: adult gut transcriptome,Drc1,Drc1,Analysis of the gut transcriptome zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP269298,,,Drc1_2.fq.gz Drc1_1.fq.gz,fastq fastq,10385611054.0,103856940.0,Drc1 1.fq.gz,0:100.00 1:100.00,A:2761852345;C:2419234218;G:2378429622;T:2821721829;N:4373040,100,100,,,2761852345,2419234218,2378429622,2821721829,4373040,SRX8636212,SRS6922578,SRA1092419,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.938,,0.04091,,0.72017,,0.41184,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-06-30,Adult,Adult,Gut,Digestive System