rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
34409,SRR31747815,SRX27109876,SRS23567839,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB2,,strain:not collected|isolate:liver AFB2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172628,LRA172628,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB2_R1.fastq.gz AFB2_R2.fastq.gz,fastq fastq,7190069454.0,23808177.0,AFB2 R1.fastq.gz,0:151 1:151,A:2078244342;C:1510893083;G:1547178609;T:2053626767;N:126653,151,151,,,2078244342,1510893083,1547178609,2053626767,126653,SRX27109876,SRS23567839,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34410,SRR31747816,SRX27109875,SRS23567837,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB1,,strain:not collected|isolate:liver AFB1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172627,LRA172627,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB1_R1.fastq.gz AFB1_R2.fastq.gz,fastq fastq,7463779000.0,24714500.0,AFB1 R1.fastq.gz,0:151 1:151,A:2176506326;C:1554667596;G:1582400568;T:2150036004;N:168506,151,151,,,2176506326,1554667596,1582400568,2150036004,168506,SRX27109875,SRS23567837,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34411,SRR31747817,SRX27109874,SRS23567838,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO4,,strain:not collected|isolate:liver EPO4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172635,LRA172635,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO4_R1.fastq.gz EPO4_R2.fastq.gz,fastq fastq,8273309328.0,27395064.0,EPO4 R1.fastq.gz,0:151 1:151,A:2390853071;C:1742121394;G:1771230346;T:2368915323;N:189194,151,151,,,2390853071,1742121394,1771230346,2368915323,189194,SRX27109874,SRS23567838,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34412,SRR31747818,SRX27109873,SRS23567836,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO3,,strain:not collected|isolate:liver EPO3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172634,LRA172634,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO3_R1.fastq.gz EPO3_R2.fastq.gz,fastq fastq,7097420082.0,23501391.0,EPO3 R1.fastq.gz,0:151 1:151,A:2092952383;C:1451623472;G:1477150205;T:2075535584;N:158438,151,151,,,2092952383,1451623472,1477150205,2075535584,158438,SRX27109873,SRS23567836,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34413,SRR31747819,SRX27109872,SRS23567834,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO2,,strain:not collected|isolate:liver EPO2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172633,LRA172633,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO2_R1.fastq.gz EPO2_R2.fastq.gz,fastq fastq,7332924514.0,24281207.0,EPO2 R1.fastq.gz,0:151 1:151,A:2162671338;C:1496551996;G:1515648771;T:2157891639;N:160770,151,151,,,2162671338,1496551996,1515648771,2157891639,160770,SRX27109872,SRS23567834,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34414,SRR31747820,SRX27109871,SRS23567835,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO1,,strain:not collected|isolate:liver EPO1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172632,LRA172632,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO1_R1.fastq.gz EPO1_R2.fastq.gz,fastq fastq,8287626544.0,27442472.0,EPO1 R1.fastq.gz,0:151 1:151,A:2435156330;C:1694808350;G:1717315788;T:2440143946;N:202130,151,151,,,2435156330,1694808350,1717315788,2440143946,202130,SRX27109871,SRS23567835,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34415,SRR31747821,SRX27109870,SRS23567833,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK5,,strain:not collected|isolate:liver CK4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172626,LRA172626,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK5_R1.fastq.gz CK5_R2.fastq.gz,fastq fastq,7157140280.0,23699140.0,CK5 R1.fastq.gz,0:151 1:151,A:2092635667;C:1492801085;G:1512780390;T:2058759456;N:163682,151,151,,,2092635667,1492801085,1512780390,2058759456,163682,SRX27109870,SRS23567833,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34416,SRR31747822,SRX27109869,SRS23567832,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK4,,strain:not collected|isolate:liver CK3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172625,LRA172625,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK4_R1.fastq.gz CK4_R2.fastq.gz,fastq fastq,5903236582.0,19547141.0,CK4 R1.fastq.gz,0:151 1:151,A:1649245280;C:1297061493;G:1327173777;T:1629624071;N:131961,151,151,,,1649245280,1297061493,1327173777,1629624071,131961,SRX27109869,SRS23567832,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34417,SRR31747823,SRX27109868,SRS23567831,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM5,,strain:not collected|isolate:liver COM4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172641,LRA172641,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM5_R1.fastq.gz COM5_R2.fastq.gz,fastq fastq,7598066924.0,25159162.0,COM5 R1.fastq.gz,0:151 1:151,A:2223131767;C:1578956803;G:1603115446;T:2192694602;N:168306,151,151,,,2223131767,1578956803,1603115446,2192694602,168306,SRX27109868,SRS23567831,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34418,SRR31747824,SRX27109867,SRS23567830,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM4,,strain:not collected|isolate:liver COM3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172640,LRA172640,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM4_R1.fastq.gz COM4_R2.fastq.gz,fastq fastq,7633749130.0,25277315.0,COM4 R1.fastq.gz,0:151 1:151,A:2223410712;C:1603699864;G:1630586500;T:2175879626;N:172428,151,151,,,2223410712,1603699864,1630586500,2175879626,172428,SRX27109867,SRS23567830,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34419,SRR31747825,SRX27109866,SRS23567829,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM3,,strain:not collected|isolate:liver COM2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172639,LRA172639,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM3_R1.fastq.gz COM3_R2.fastq.gz,fastq fastq,7474959946.0,24751523.0,COM3 R1.fastq.gz,0:151 1:151,A:2145268206;C:1597121014;G:1632808908;T:2099584265;N:177553,151,151,,,2145268206,1597121014,1632808908,2099584265,177553,SRX27109866,SRS23567829,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34420,SRR31747826,SRX27109865,SRS23567827,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM2,,strain:not collected|isolate:liver COM1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172638,LRA172638,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM2_R1.fastq.gz COM2_R2.fastq.gz,fastq fastq,8791460090.0,29110795.0,COM2 R1.fastq.gz,0:151 1:151,A:2541630685;C:1869577126;G:1894336180;T:2485706665;N:209434,151,151,,,2541630685,1869577126,1894336180,2485706665,209434,SRX27109865,SRS23567827,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34421,SRR31747827,SRX27109864,SRS23567828,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB4,,strain:not collected|isolate:liver AFB4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172630,LRA172630,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB4_R1.fastq.gz AFB4_R2.fastq.gz,fastq fastq,7267902102.0,24065901.0,AFB4 R1.fastq.gz,0:151 1:151,A:2123758982;C:1506909715;G:1535054542;T:2102016033;N:162830,151,151,,,2123758982,1506909715,1535054542,2102016033,162830,SRX27109864,SRS23567828,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34422,SRR31747828,SRX27109863,SRS23567826,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB3,,strain:not collected|isolate:liver AFB3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172629,LRA172629,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB3_R1.fastq.gz AFB3_R2.fastq.gz,fastq fastq,6300108070.0,20861285.0,AFB3 R1.fastq.gz,0:151 1:151,A:1796927680;C:1350016175;G:1379242261;T:1773425050;N:496904,151,151,,,1796927680,1350016175,1379242261,1773425050,496904,SRX27109863,SRS23567826,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34423,SRR31747829,SRX27109862,SRS23567825,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK2,,strain:not collected|isolate:liver CK2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172623,LRA172623,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK2_R1.fastq.gz CK2_R2.fastq.gz,fastq fastq,6706705770.0,22207635.0,CK2 R1.fastq.gz,0:151 1:151,A:1918005955;C:1429871875;G:1469836872;T:1888840563;N:150505,151,151,,,1918005955,1429871875,1469836872,1888840563,150505,SRX27109862,SRS23567825,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34424,SRR31747830,SRX27109861,SRS23567824,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK1,,strain:not collected|isolate:liver CK1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172622,LRA172622,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK1_R1.fastq.gz CK1_R2.fastq.gz,fastq fastq,6319435768.0,20925284.0,CK1 R1.fastq.gz,0:151 1:151,A:1793805737;C:1361852588;G:1396171190;T:1767105304;N:500949,151,151,,,1793805737,1361852588,1396171190,1767105304,500949,SRX27109861,SRS23567824,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
38289,SRR1731761,SRX828260,SRS807370,SRP051449,PRJNA266270,Danio rerio Transcriptome or Gene expression,PRJNA266270,Other,To identify molecular signals that initiate liver regeneration post 1/3 PH,,,,,sham operated liver transcriptome post 1/3 PH,,breed:AB line|cultivar:AB line|strain:AB line|age:10 month|sex:female|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,sham operated liver transcriptome post 1/3 PH,sham operated,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP051449,,,sham-operated_R1.fastq.gz sham-operated_R2.fastq.gz,fastq fastq,2339904960.0,16249340.0,sham operated,0:72 1:72,A:639730953;C:549099184;G:603489762;T:545135156;N:2449905,72,72,,,639730953,549099184,603489762,545135156,2449905,SRX828260,SRS807370,SRA223828,"Institute of Hydrobiology, Chinese Academy of Scie|The Key Laboratory of Aquatic Biodiversity and Con",Chinese Academy of Sciences,2,0.9353,0.91074,0.02617,0.0253,0.86334,0.86387,0.35902,0.36066,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2016-02-05,Adult,Adult,Liver,Liver and Biliary System
38368,SRR1794626,SRX869998,SRS840790,SRP053395,PRJNA275005,Danio rerio Transcriptome or Gene expression,PRJNA275005,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH,,,24h liver,,24h,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h,seq3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053395,,,24h_run1_R2.fastq.gz 24h_run1_R1.fastq.gz,fastq fastq,2289928608.0,15902282.0,24h run1,0:72 1:72,A:626915024;C:536371415;G:589478213;T:534770153;N:2393803,72,72,,,626915024,536371415,589478213,534770153,2393803,SRX869998,SRS840790,SRA237004,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92769,0.90986,0.02558,0.02455,0.8493,0.84829,0.43228,0.43547,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-04-27,Adult,Adult,Liver,Liver and Biliary System
38369,SRR1794625,SRX869996,SRS840789,SRP053395,PRJNA275005,Danio rerio Transcriptome or Gene expression,PRJNA275005,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH,,,6h liver,,6h,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h,seq2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053395,,,,,2014108128.0,13986862.0,6h run1,0:72 1:72,A:542840697;C:473739345;G:521450086;T:473979205;N:2098795,72,72,,,542840697,473739345,521450086,473979205,2098795,SRX869996,SRS840789,SRA237004,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92694,0.90124,0.02907,0.0277,0.85178,0.85044,0.41862,0.40751,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38370,SRR1794624,SRX869994,SRS840787,SRP053395,PRJNA275005,Danio rerio Transcriptome or Gene expression,PRJNA275005,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH,,,sham liver,,sham,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham,seq1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053395,,,sham_run1_R2.fastq.gz sham_run1_R1.fastq.gz,fastq fastq,2339904960.0,16249340.0,sham run1,0:72 1:72,A:639730953;C:549099184;G:603489762;T:545135156;N:2449905,72,72,,,639730953,549099184,603489762,545135156,2449905,SRX869994,SRS840787,SRA237004,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9353,0.91073,0.02617,0.02532,0.8635,0.86375,0.35879,0.36066,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-09-01,Adult,Adult,Liver,Liver and Biliary System
38371,SRR1797772,SRX872343,SRS842660,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,168h liver,,168h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 168h3,168h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,168h3_R2.fastq.gz 168h3_R1.fastq.gz,fastq fastq,1829810880.0,12707020.0,168h3 run1,0:72 1:72,A:507414236;C:419304531;G:483140650;T:415843108;N:4108355,72,72,,,507414236,419304531,483140650,415843108,4108355,SRX872343,SRS842660,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93139,0.91693,0.02938,0.02891,0.85786,0.85896,0.39495,0.39212,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38372,SRR1797771,SRX872342,SRS842658,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,168h liver,,168h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 168h2,168h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,168h2_R2.fastq.gz 168h2_R1.fastq.gz,fastq fastq,1372976928.0,9534562.0,168h2 run1,0:72 1:72,A:387077556;C:311282950;G:355929958;T:317312161;N:1374303,72,72,,,387077556,311282950,355929958,317312161,1374303,SRX872342,SRS842658,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92667,0.9069,0.03341,0.03285,0.85498,0.85492,0.4097,0.41426,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38373,SRR1797770,SRX872341,SRS842657,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,168h liver,,168h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 168h1,168h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,,,2340104400.0,16250725.0,168h1 run1,0:72 1:72,A:667910990;C:526343343;G:603352668;T:540093539;N:2403860,72,72,,,667910990,526343343,603352668,540093539,2403860,SRX872341,SRS842657,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92746,0.90675,0.03592,0.03513,0.85476,0.85439,0.42337,0.42165,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38374,SRR1797769,SRX872340,SRS842656,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,120h liver,,120h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 120h3,120h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,120h3_R2.fastq.gz 120h3_R1.fastq.gz,fastq fastq,2124608256.0,14754224.0,120h3 run1,0:72 1:72,A:589644602;C:493725581;G:545952985;T:492854671;N:2430417,72,72,,,589644602,493725581,545952985,492854671,2430417,SRX872340,SRS842656,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.91869,0.89606,0.03516,0.03395,0.81251,0.81355,0.48462,0.48678,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38375,SRR1797766,SRX872339,SRS842654,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,120h liver,,120h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 120h2,120h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,120h2_R2.fastq.gz 120h2_R1.fastq.gz,fastq fastq,3623274144.0,25161626.0,120h2 run1,0:72 1:72,A:989104008;C:844487837;G:939298291;T:842275169;N:8108839,72,72,,,989104008,844487837,939298291,842275169,8108839,SRX872339,SRS842654,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92813,0.91285,0.03423,0.03358,0.8229,0.82465,0.47773,0.46762,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38376,SRR1797767,SRX872338,SRS842655,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,120h liver,,120h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 120h1,120h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,120h1_R1.fastq.gz 120h1_R2.fastq.gz,fastq fastq,2166956496.0,15048309.0,120h1 run1,0:72 1:72,A:598794680;C:504653997;G:556024260;T:505305435;N:2178124,72,72,,,598794680,504653997,556024260,505305435,2178124,SRX872338,SRS842655,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92625,0.89458,0.03686,0.03577,0.83313,0.83319,0.3839,0.38104,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38377,SRR1797747,SRX872337,SRS842650,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,72h liver,,72h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 72h3,72h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,72h3_R2.fastq.gz 72h3_R1.fastq.gz,fastq fastq,2933514432.0,20371628.0,72h3 run1,0:72 1:72,A:797742153;C:682061705;G:766687384;T:683472770;N:3550420,72,72,,,797742153,682061705,766687384,683472770,3550420,SRX872337,SRS842650,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92802,0.91291,0.04028,0.03941,0.80823,0.8058,0.38547,0.38408,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38378,SRR1797748,SRX872335,SRS842652,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,72h liver,,72h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 72h2,72h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,72h2_R1.fastq.gz 72h2_R2.fastq.gz,fastq fastq,2557417104.0,17759841.0,72h2 run1,0:72 1:72,A:696915838;C:596106147;G:665835965;T:595973685;N:2585469,72,72,,,696915838,596106147,665835965,595973685,2585469,SRX872335,SRS842652,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93065,0.91586,0.03416,0.03379,0.8141,0.81499,0.42586,0.43195,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38379,SRR1797757,SRX872334,SRS842653,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,72h liver,,72h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 72h1,72h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,72h1_R2.fastq.gz 72h1_R1.fastq.gz,fastq fastq,1736716752.0,12060533.0,72h1 run1,0:72 1:72,A:475022900;C:405075078;G:460472558;T:394162576;N:1983640,72,72,,,475022900,405075078,460472558,394162576,1983640,SRX872334,SRS842653,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92183,0.90613,0.0358,0.03522,0.8115,0.81101,0.42319,0.42579,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38380,SRR1797745,SRX872333,SRS842648,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,24h liver,,24h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h3,24h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,,,1569651120.0,10900355.0,24h3 run1,0:72 1:72,A:423126744;C:367185056;G:396200408;T:381254240;N:1884672,72,72,,,423126744,367185056,396200408,381254240,1884672,SRX872333,SRS842648,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93264,0.91619,0.03833,0.03737,0.81688,0.81572,0.43721,0.43409,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38381,SRR1797746,SRX872331,SRS842649,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,24h liver,,24h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h2,24h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,24h2_R2.fastq.gz 24h2_R1.fastq.gz,fastq fastq,1422217008.0,9876507.0,24h2 run1,0:72 1:72,A:390236570;C:330456473;G:374590722;T:323786549;N:3146694,72,72,,,390236570,330456473,374590722,323786549,3146694,SRX872331,SRS842649,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92821,0.91652,0.03889,0.03857,0.80967,0.81081,0.46985,0.47021,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38382,SRR1797739,SRX872330,SRS842642,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,24h liver,,24h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h1,24h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,24h1_R2.fastq.gz 24h1_R1.fastq.gz,fastq fastq,2626902432.0,18242378.0,24h1 run1,0:72 1:72,A:714587119;C:615398392;G:680070460;T:614156384;N:2690077,72,72,,,714587119,615398392,680070460,614156384,2690077,SRX872330,SRS842642,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9304,0.91251,0.03891,0.03782,0.81544,0.81497,0.44392,0.44136,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38383,SRR1797742,SRX872329,SRS842643,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,6h liver,,6h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h3,6h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,6h3_R2.fastq.gz 6h3_R1.fastq.gz,fastq fastq,1938177648.0,13459567.0,6h3 run1,0:72 1:72,A:523126356;C:454912954;G:495840791;T:462357650;N:1939897,72,72,,,523126356,454912954,495840791,462357650,1939897,SRX872329,SRS842643,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93257,0.90684,0.03621,0.03457,0.83869,0.83863,0.33982,0.34227,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38384,SRR1797743,SRX872328,SRS842644,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,6h liver,,6h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h2,6h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,6h2_R2.fastq.gz 6h2_R1.fastq.gz,fastq fastq,2319432192.0,16107168.0,6h2 run1,0:72 1:72,A:625884355;C:540703450;G:592119356;T:557909621;N:2815410,72,72,,,625884355,540703450,592119356,557909621,2815410,SRX872328,SRS842644,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93408,0.91082,0.0354,0.03434,0.83796,0.83749,0.31743,0.30223,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38385,SRR1797744,SRX872326,SRS842646,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,6h liver,,6h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h1,6h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,6h1_R1.fastq.gz 6h1_R2.fastq.gz,fastq fastq,1185504192.0,8232668.0,6h1 run1,0:72 1:72,A:323711674;C:275906178;G:301056404;T:283638538;N:1191398,72,72,,,323711674,275906178,301056404,283638538,1191398,SRX872326,SRS842646,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.935,0.90283,0.03624,0.03492,0.85957,0.86011,0.3455,0.33748,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38386,SRR1797731,SRX872325,SRS842639,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,sham liver,,sham3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham3,sham3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,sham3_R1.fastq.gz sham3_R2.fastq.gz,fastq fastq,1303090560.0,9049240.0,sham3,0:72 1:72,A:359825691;C:304363785;G:341568854;T:296025320;N:1306910,72,72,,,359825691,304363785,341568854,296025320,1306910,SRX872325,SRS842639,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93381,0.90458,0.02771,0.02603,0.87411,0.87361,0.29605,0.29329,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38387,SRR1797734,SRX872324,SRS842640,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,sham liver,,sham2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham2,sham2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,sham2_R2.fastq.gz sham2_R1.fastq.gz,fastq fastq,1191890880.0,8277020.0,sham2,0:72 1:72,A:326599941;C:278538295;G:311022201;T:274492630;N:1237813,72,72,,,326599941,278538295,311022201,274492630,1237813,SRX872324,SRS842640,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93879,0.91451,0.02936,0.02817,0.88333,0.88357,0.27449,0.27692,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38388,SRR1797733,SRX872323,SRS842641,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,sham liver,,sham1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham1,sham1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,sham1_R1.fastq.gz sham1_R2.fastq.gz,fastq fastq,1459401408.0,10134732.0,sham1,0:72 1:72,A:400303022;C:340413227;G:380056042;T:336967745;N:1661372,72,72,,,400303022,340413227,380056042,336967745,1661372,SRX872323,SRS842641,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93216,0.90538,0.03151,0.03038,0.88781,0.88787,0.28115,0.27603,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
41593,SRR392106,SRX111567,SRS282484,SRP009841,PRJNA3560,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNAseq,Transcriptome Analysis,The zebrafish Danio rerio is a prominent vertebrate development model  has been extensively utilized as the pathogen host interaction to be studied in recent yrs. However  the mechanisms involved in the immune response of the zebrafish to vaccine are not fully understood. For clarify the high immune relative protection in zebrafish following the immunization of the putative Edwardsiella tarda E. tarda live attenuate vaccine  we performed a comparative gene expression analysis of mocked and immunized zebrafish using the RNA seq technology and DEGseq to identify differential expressed genes  chiefly for gaining deep insight into the liver immunogenetics post WEDplas vaccinated zebrafish.,,,RNA sequencinag of mRNAs from zebrafish liver following live attenuate vaccine immunized 2 days.,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNA sequence,,,,,,,,,,,ZF RNA sequence,ZF RNA sequence,wt1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP009841,,,c1-2_1.fq c1-2_2.fq,fastq fastq,855494000.0,4502600.0,Control Sampe 1,0:100 1:90,A:217839807;C:202017646;G:207454208;T:227797566;N:384773,100,90,,,217839807,202017646,207454208,227797566,384773,SRX111567,SRS282484,SRA048658,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,2,0.87575,0.93454,0.06936,0.08546,0.82513,0.82306,0.49603,0.49334,100,90,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2012-08-01,Undetermined,Undetermined,Liver,Liver and Biliary System
41594,SRR392108,SRX111567,SRS282484,SRP009841,PRJNA3560,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNAseq,Transcriptome Analysis,The zebrafish Danio rerio is a prominent vertebrate development model  has been extensively utilized as the pathogen host interaction to be studied in recent yrs. However  the mechanisms involved in the immune response of the zebrafish to vaccine are not fully understood. For clarify the high immune relative protection in zebrafish following the immunization of the putative Edwardsiella tarda E. tarda live attenuate vaccine  we performed a comparative gene expression analysis of mocked and immunized zebrafish using the RNA seq technology and DEGseq to identify differential expressed genes  chiefly for gaining deep insight into the liver immunogenetics post WEDplas vaccinated zebrafish.,,,RNA sequencinag of mRNAs from zebrafish liver following live attenuate vaccine immunized 2 days.,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNA sequence,,,,,,,,,,,ZF RNA sequence,ZF RNA sequence,wt1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP009841,,,c2-2_1.fq c2-2_2.fq,fastq fastq,1238874100.0,6520390.0,Control Sampe 2,0:100 1:90,A:316162781;C:292160612;G:299402161;T:330578118;N:570428,100,90,,,316162781,292160612,299402161,330578118,570428,SRX111567,SRS282484,SRA048658,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,2,0.89891,0.94864,0.03863,0.04738,0.8673,0.86531,0.28488,0.27076,100,90,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2012-08-01,Undetermined,Undetermined,Liver,Liver and Biliary System
41595,SRR392109,SRX111567,SRS282484,SRP009841,PRJNA3560,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNAseq,Transcriptome Analysis,The zebrafish Danio rerio is a prominent vertebrate development model  has been extensively utilized as the pathogen host interaction to be studied in recent yrs. However  the mechanisms involved in the immune response of the zebrafish to vaccine are not fully understood. For clarify the high immune relative protection in zebrafish following the immunization of the putative Edwardsiella tarda E. tarda live attenuate vaccine  we performed a comparative gene expression analysis of mocked and immunized zebrafish using the RNA seq technology and DEGseq to identify differential expressed genes  chiefly for gaining deep insight into the liver immunogenetics post WEDplas vaccinated zebrafish.,,,RNA sequencinag of mRNAs from zebrafish liver following live attenuate vaccine immunized 2 days.,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNA sequence,,,,,,,,,,,ZF RNA sequence,ZF RNA sequence,wt1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP009841,,,c3-2_2.fq c3-2_1.fq,fastq fastq,2412101476.0,12830327.0,Control Sampe 3,0:100 1:88,A:611075174;C:569003408;G:589175071;T:641747898;N:1099925,100,88,,,611075174,569003408,589175071,641747898,1099925,SRX111567,SRS282484,SRA048658,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,2,0.87563,0.94341,0.03506,0.0441,0.83063,0.82795,0.41995,0.41226,100,88,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2012-08-01,Undetermined,Undetermined,Liver,Liver and Biliary System
41596,SRR392110,SRX111567,SRS282484,SRP009841,PRJNA3560,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNAseq,Transcriptome Analysis,The zebrafish Danio rerio is a prominent vertebrate development model  has been extensively utilized as the pathogen host interaction to be studied in recent yrs. However  the mechanisms involved in the immune response of the zebrafish to vaccine are not fully understood. For clarify the high immune relative protection in zebrafish following the immunization of the putative Edwardsiella tarda E. tarda live attenuate vaccine  we performed a comparative gene expression analysis of mocked and immunized zebrafish using the RNA seq technology and DEGseq to identify differential expressed genes  chiefly for gaining deep insight into the liver immunogenetics post WEDplas vaccinated zebrafish.,,,RNA sequencinag of mRNAs from zebrafish liver following live attenuate vaccine immunized 2 days.,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNA sequence,,,,,,,,,,,ZF RNA sequence,ZF RNA sequence,wt1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP009841,,,v1_2.fq v1_1.fq,fastq fastq,1549099640.0,8153156.0,Case sampe 1,0:100 1:90,A:412607118;C:353282622;G:359371048;T:423373718;N:465134,100,90,,,412607118,353282622,359371048,423373718,465134,SRX111567,SRS282484,SRA048658,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,2,0.92368,0.9462,0.0604,0.06838,0.81249,0.81578,0.47008,0.4761,100,90,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2012-08-01,Undetermined,Undetermined,Liver,Liver and Biliary System
41597,SRR392111,SRX111567,SRS282484,SRP009841,PRJNA3560,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNAseq,Transcriptome Analysis,The zebrafish Danio rerio is a prominent vertebrate development model  has been extensively utilized as the pathogen host interaction to be studied in recent yrs. However  the mechanisms involved in the immune response of the zebrafish to vaccine are not fully understood. For clarify the high immune relative protection in zebrafish following the immunization of the putative Edwardsiella tarda E. tarda live attenuate vaccine  we performed a comparative gene expression analysis of mocked and immunized zebrafish using the RNA seq technology and DEGseq to identify differential expressed genes  chiefly for gaining deep insight into the liver immunogenetics post WEDplas vaccinated zebrafish.,,,RNA sequencinag of mRNAs from zebrafish liver following live attenuate vaccine immunized 2 days.,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNA sequence,,,,,,,,,,,ZF RNA sequence,ZF RNA sequence,wt1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP009841,,,v2_1.fq v2_2.fq,fastq fastq,1465445712.0,7794924.0,Case sampe 2,0:100 1:88,A:387149663;C:337675800;G:340143929;T:400109622;N:366698,100,88,,,387149663,337675800,340143929,400109622,366698,SRX111567,SRS282484,SRA048658,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,2,0.92047,0.94711,0.05494,0.06325,0.81255,0.8143,0.48839,0.47383,100,88,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2012-08-01,Undetermined,Undetermined,Liver,Liver and Biliary System
41598,SRR402758,SRX111567,SRS282484,SRP009841,PRJNA3560,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNAseq,Transcriptome Analysis,The zebrafish Danio rerio is a prominent vertebrate development model  has been extensively utilized as the pathogen host interaction to be studied in recent yrs. However  the mechanisms involved in the immune response of the zebrafish to vaccine are not fully understood. For clarify the high immune relative protection in zebrafish following the immunization of the putative Edwardsiella tarda E. tarda live attenuate vaccine  we performed a comparative gene expression analysis of mocked and immunized zebrafish using the RNA seq technology and DEGseq to identify differential expressed genes  chiefly for gaining deep insight into the liver immunogenetics post WEDplas vaccinated zebrafish.,,,RNA sequencinag of mRNAs from zebrafish liver following live attenuate vaccine immunized 2 days.,RNA seq based liver transcriptome analysis revealed an activated MHC I pathway and an inhibited MHC II pathway at the early stage of vaccine immunization in zebrafish,ZF RNA sequence,,,,,,,,,,,ZF RNA sequence,ZF RNA sequence,wt1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP009841,,,v3_2.fq v3_1.fq,fastq fastq,1025249164.0,5453453.0,Case sampe 3,0:100 1:88,A:261599009;C:242254683;G:249423008;T:271717829;N:254635,100,88,,,261599009,242254683,249423008,271717829,254635,SRX111567,SRS282484,SRA048658,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,East China University Of Science And Technology|State Key Laboratory of Pathogen and Biosecurity,2,0.93668,0.95934,0.02982,0.03449,0.81347,0.8196,0.47392,0.47176,100,88,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2012-08-01,Undetermined,Undetermined,Liver,Liver and Biliary System
42181,SRR5482153,SRX2765568,SRS2149771,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Large harvested line  biological replicate 1  F2 offspring originating from wild caught population,LS1 F2,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2008|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a large harvested selection line F2 individuals,LS1 F2,LS1 F2,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,LS1-F2-10_FCC4CMHACXX_L1_WHZEBagiNCADRAAPEI-205_1.fq.gz LS1-F2-1_FCC4BKHACXX_L7_WHZEBagiNCAARAAPEI-201_1.fq.gz LS1-F2-5_FCC4BKHACXX_L7_WHZEBagiNCABRAAPEI-202_1.fq.gz LS1-F2-8_FCC4BKHACXX_L7_WHZEBagiNCACRAAPEI-203_1.fq.gz,fastq fastq fastq fastq,12496905120.0,255038880.0,LS1 F2 10 FCC4CMHACXX L1 WHZEBagiNCADRAAPEI 205 1.fq.gz,0:49,A:3275093505;C:2981786839;G:2904373605;T:3334855308;N:795863,49,,,,3275093505,2981786839,2904373605,3334855308,795863,SRX2765568,SRS2149771,SRA557107,University of Turku|Biology,University of Turku,1,0.88577,,0.04599,,0.76469,,0.48703,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42182,SRR5482152,SRX2765567,SRS2149770,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Large harvested line  biological replicate 2  F2 offspring originating from wild caught population,LS2 F2,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2008|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a large harvested selection line F2 individuals,LS2 F2,LS2 F2,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,LS2-F2-10_FCC4CMHACXX_L4_WHZEBagiNCALRAAPEI-213_1.fq.gz LS2-F2-11_FCC4CMHACXX_L4_WHZEBagiNCAMRAAPEI-214_1.fq.gz LS2-F2-14_FCC4C2AACXX_L1_WHZEBagiNCANRAAPEI-215_1.fq.gz LS2-F2-9_FCC4CMHACXX_L4_WHZEBagiNCAKRAAPEI-212_1.fq.gz,fastq fastq fastq fastq,11108547205.0,226705045.0,LS2 F2 9 FCC4CMHACXX L4 WHZEBagiNCAKRAAPEI 212 1.fq.gz,0:49,A:2930693084;C:2628276474;G:2564131315;T:2984423047;N:1023285,49,,,,2930693084,2628276474,2564131315,2984423047,1023285,SRX2765567,SRS2149770,SRA557107,University of Turku|Biology,University of Turku,1,0.90013,,0.04677,,0.81251,,0.44762,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42183,SRR5482151,SRX2765565,SRS2149769,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Random harvested line  biological replicate 1  F2 offspring originating from wild caught population,RS1 F2,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2008|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a random harvested selection line F2 individuals,RS1 F2,RS1 F2,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,RS1-F2-14_FCC4C2AACXX_L2_WHZEBagiNCAURAAPEI-223_1.fq.gz RS1-F2-16_FCC4C2AACXX_L2_WHZEBagiNCAVRAAPEI-225_1.fq.gz RS1-F2-17_FCC4C2AACXX_L3_WHZEBagiNCAWRAAPEI-227_1.fq.gz RS1-F2-19_FCC4C2AACXX_L3_WHZEBagiNCAXRAAPEI-201_1.fq.gz,fastq fastq fastq fastq,12074501894.0,246418406.0,RS1 F2 16 FCC4C2AACXX L2 WHZEBagiNCAVRAAPEI 225 1.fq.gz,0:49,A:3199737416;C:2851335695;G:2767557430;T:3254746975;N:1124378,49,,,,3199737416,2851335695,2767557430,3254746975,1124378,SRX2765565,SRS2149769,SRA557107,University of Turku|Biology,University of Turku,1,0.87838,,0.05071,,0.81663,,0.55417,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42184,SRR5482150,SRX2765564,SRS2149768,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Random harvested line  biological replicate 2  F2 offspring originating from wild caught population,RS2 F2,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2008|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a random harvested selection line F2 individuals,RS2 F2,RS2 F2,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,RS2-F2-3_FCC4CMHACXX_L2_WHZEBagiNCBFRAAPEI-210_1.fq.gz RS2-F2-6-2_FCC4CMHACXX_L2_WHZEBagiNCBGRAAPEI-211_1.fq.gz RS2-F2-8_FCC4CMHACXX_L2_WHZEBagiNCBHRABPEI-212_1.fq.gz RS2-F2-9_FCC4CMHACXX_L3_WHZEBagiNCBIRABPEI-213_1.fq.gz,fastq fastq fastq fastq,11923597525.0,243338725.0,RS2 F2 9 FCC4CMHACXX L3 WHZEBagiNCBIRABPEI 213 1.fq.gz,0:49,A:3132507165;C:2819390547;G:2776793842;T:3193588286;N:1317685,49,,,,3132507165,2819390547,2776793842,3193588286,1317685,SRX2765564,SRS2149768,SRA557107,University of Turku|Biology,University of Turku,1,0.90986,,0.05269,,0.814,,0.36827,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42185,SRR5482149,SRX2765563,SRS2149767,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Large harvested line  biological replicate 1  F5 offspring originating from wild caught population,LS1 F5,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2010|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a large harvested selection line F5 individuals,LS1 F5,LS1 F5,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,LS1-15_FCC4C3HACXX_L1_WHZEBagiNBANRAAPEI-215_1.fq.gz LS1-2_FCC4BJ2ACXX_L5_WHZEBagiNBABRAAPEI-202_1.fq.gz LS1-6_FCC4BJ2ACXX_L6_WHZEBagiNBAFRAAPEI-207_1.fq.gz LS1-8_FCC4BJ2ACXX_L8_WHZEBagiNBAJRAAPEI-211_1.fq.gz,fastq fastq fastq fastq,12776192331.0,260738619.0,LS1 2 FCC4BJ2ACXX L5 WHZEBagiNBABRAAPEI 202 1.fq.gz,0:49,A:3371838433;C:3025006624;G:2934135898;T:3444117388;N:1093988,49,,,,3371838433,3025006624,2934135898,3444117388,1093988,SRX2765563,SRS2149767,SRA557107,University of Turku|Biology,University of Turku,1,0.88482,,0.04932,,0.813,,0.51224,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42186,SRR5482148,SRX2765562,SRS2149766,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Large harvested line  biological replicate 2  F5 offspring originating from wild caught population,LS2 F5,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2010|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a large harvested selection line F5 individuals,LS2 F5,LS2 F5,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,LS2-10_FCC4BJ2ACXX_L8_WHZEBagiNBAKRAAPEI-212_1.fq.gz LS2-11_FCC4C3HACXX_L1_WHZEBagiNBAORAAPEI-216_1.fq.gz LS2-1_FCC4BJ2ACXX_L5_WHZEBagiNBACRAAPEI-203_1.fq.gz LS2-7_FCC4BVYACXX_L1_WHZEBagiNBAGRAAPEI-208_1.fq.gz,fastq fastq fastq fastq,11941143935.0,243696815.0,LS2 10 FCC4BJ2ACXX L8 WHZEBagiNBAKRAAPEI 212 1.fq.gz,0:49,A:3165540142;C:2817777586;G:2733117846;T:3223679054;N:1029307,49,,,,3165540142,2817777586,2733117846,3223679054,1029307,SRX2765562,SRS2149766,SRA557107,University of Turku|Biology,University of Turku,1,0.87119,,0.04752,,0.80251,,0.55444,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42187,SRR5482147,SRX2765561,SRS2149765,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Random harvested line  biological replicate 1  F5 offspring originating from wild caught population,RS1 F5,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2010|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a random harvested selection line F5 individuals,RS1 F5,RS1 F5,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,RS1-10_FCC4BJ2ACXX_L8_WHZEBagiNBALRAAPEI-213_1.fq.gz RS1-2_FCC4Y2GACXX_L4_WHZEBagiNCBPRABPEI-221_1.fq.gz RS1-3_FCC4BJ2ACXX_L6_WHZEBagiNBADRAAPEI-205_1.fq.gz RS1-6_FCC4BV7ACXX_L1_WHZEBagiNBAHRAAPEI-209_1.fq.gz,fastq fastq fastq fastq,12149652753.0,247952097.0,RS1 6 FCC4BV7ACXX L1 WHZEBagiNBAHRAAPEI 209 1.fq.gz,0:49,A:3177681868;C:2907323525;G:2822484622;T:3241144133;N:1018605,49,,,,3177681868,2907323525,2822484622,3241144133,1018605,SRX2765561,SRS2149765,SRA557107,University of Turku|Biology,University of Turku,1,0.90495,,0.04625,,0.80028,,0.56443,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42188,SRR5482146,SRX2765560,SRS2149764,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Random harvested line  biological replicate 2  F5 offspring originating from wild caught population,RS2 F5,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2010|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a random harvested selection line F5 individuals,RS2 F5,RS2 F5,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,RS2-10_FCC4BVYACXX_L1_WHZEBagiNBAIRAAPEI-210_1.fq.gz RS2-13_FCC4C3HACXX_L1_WHZEBagiNBAMRAAPEI-214_1.fq.gz RS2-2_FCC4BJ2ACXX_L5_WHZEBagiNBAARAAPEI-201_1.fq.gz RS2-3_FCC4C19ACXX_L5_WHZEBagiNBAERAAPEI-206_1.fq.gz,fastq fastq fastq fastq,11262796951.0,229852999.0,RS2 13 FCC4C3HACXX L1 WHZEBagiNBAMRAAPEI 214 1.fq.gz,0:49,A:2931626627;C:2710523895;G:2627211912;T:2992545637;N:888880,49,,,,2931626627,2710523895,2627211912,2992545637,888880,SRX2765560,SRS2149764,SRA557107,University of Turku|Biology,University of Turku,1,0.88588,,0.04266,,0.8112,,0.52927,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42189,SRR5482145,SRX2765559,SRS2149763,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Large harvested line  biological replicate 1  F11 offspring originating from wild caught population,LS1 F11,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2014|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a large harvested selection line F11 individuals,LS1 F11,LS1 F11,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,LS1-F11B-11_FCC4CMHACXX_L1_WHZEBagiNCAERAAPEI-206_1.fq.gz LS1-F11B-13_FCC4CMHACXX_L1_WHZEBagiNCAFRAAPEI-207_1.fq.gz LS1-F11B-16_FCC4C19ACXX_L1_WHZEBagiNCAGRBAPEI-208_1.fq.gz LS1-F11B-17_FCC4BKHACXX_L8_WHZEBagiNCAHRAAPEI-209_1.fq.gz,fastq fastq fastq fastq,11326213584.0,231147216.0,LS1 F11B 16 FCC4C19ACXX L1 WHZEBagiNCAGRBAPEI 208 1.fq.gz,0:49,A:2982223592;C:2693407623;G:2622876703;T:3026833843;N:871823,49,,,,2982223592,2693407623,2622876703,3026833843,871823,SRX2765559,SRS2149763,SRA557107,University of Turku|Biology,University of Turku,1,0.90202,,0.04273,,0.78273,,0.51238,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42190,SRR5482144,SRX2765558,SRS2149762,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Large harvested line  biological replicate 2  F11 offspring originating from wild caught population,LS2 F11,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2014|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a large harvested selection line F11 individuals,LS2 F11,LS2 F11,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,LS2-F11B-1_FCC4C2AACXX_L1_WHZEBagiNCAORAAPEI-216_1.fq.gz LS2-F11B-2_FCC4C2AACXX_L1_WHZEBagiNCAPRAAPEI-218_1.fq.gz LS2-F11B-5_FCC4CMHACXX_L5_WHZEBagiNCAQRAAPEI-219_1.fq.gz LS2-F11B-7_FCC4CMHACXX_L5_WHZEBagiNCARRAAPEI-220_1.fq.gz,fastq fastq fastq fastq,12030571875.0,245521875.0,LS2 F11B 7 FCC4CMHACXX L5 WHZEBagiNCARRAAPEI 220 1.fq.gz,0:49,A:3149792862;C:2871072895;G:2795019949;T:3213514581;N:1171588,49,,,,3149792862,2871072895,2795019949,3213514581,1171588,SRX2765558,SRS2149762,SRA557107,University of Turku|Biology,University of Turku,1,0.91893,,0.036,,0.77429,,0.38962,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42191,SRR5482143,SRX2765557,SRS2149760,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Random harvested line  biological replicate 1  F11 offspring originating from wild caught population,RS1 F11,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2014|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a random harvested selection line F11 individuals,RS1 F11,RS1 F11,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,RS1-F11B-21_FCC4C2AACXX_L3_WHZEBagiNCAYRAAPEI-202_1.fq.gz RS1-F11B-23_FCC4C2AACXX_L4_WHZEBagiNCAZRAAPEI-203_1.fq.gz RS1-F11B-27_FCC4C2AACXX_L4_WHZEBagiNCBARAAPEI-205_1.fq.gz RS1-F11B-29_FCC4C2AACXX_L4_WHZEBagiNCBBRAAPEI-206_1.fq.gz,fastq fastq fastq fastq,11947679555.0,243830195.0,RS1 F11B 21 FCC4C2AACXX L3 WHZEBagiNCAYRAAPEI 202 1.fq.gz,0:49,A:3159477117;C:2827401119;G:2753495798;T:3206143470;N:1162051,49,,,,3159477117,2827401119,2753495798,3206143470,1162051,SRX2765557,SRS2149760,SRA557107,University of Turku|Biology,University of Turku,1,0.87877,,0.04488,,0.77445,,0.50852,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
42192,SRR5482142,SRX2765556,SRS2149761,SRP105243,PRJNA383986,Danio rerio Raw sequence reads,PRJNA383986,Other,The goal of the experiment was to simulate the effect of size selective harvesting and captive rearing on gene expression in a controlled environment using zebrafish as a model species.,,,,Danio rerio: Random harvested line  biological replicate 2  F11 offspring originating from wild caught population,RS2 F11,,breed:missing|dev stage:juvenile|sex:female|tissue:liver|death date:2014|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: juvenile female liver RNA of 4 biological replicates from a random harvested selection line F11 individuals,RS2 F11,RS2 F11,Total RNA from liver tissue of juvenile zebrafish was extracted according to the Trizol method with TRI reagent Sigma. The liver tissue was homogenized with a TissueLyser II homogenizer Qiagen. DNase treatment was performed to remove any genomic DNA from the samples. RNA was eluted in RNase free water and RNA concentrations and the integrity of RNA samples were determined using an Agilent 2100 Bioanalyzer.  Total RNA was processed by using Low Input Library Preparation Kit to prepare the RNA Seq library.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP105243,,,RS2-F11B-34_FCC4CMHACXX_L3_WHZEBagiNCBJRABPEI-214_1.fq.gz RS2-F11B-36_FCC4CMHACXX_L3_WHZEBagiNCBKRABPEI-215_1.fq.gz RS2-F11B-38_FCC4BY1ACXX_L1_WHZEBagiNCBLRABPEI-216_1.fq.gz RS2-F11B-40_FCC4BY1ACXX_L1_WHZEBagiNCBMRABPEI-218_1.fq.gz,fastq fastq fastq fastq,10619740698.0,216729402.0,RS2 F11B 38 FCC4BY1ACXX L1 WHZEBagiNCBLRABPEI 216 1.fq.gz,0:49,A:2799661065;C:2501316593;G:2465115836;T:2852970598;N:676606,49,,,,2799661065,2501316593,2465115836,2852970598,676606,SRX2765556,SRS2149761,SRA557107,University of Turku|Biology,University of Turku,1,0.8851,,0.04865,,0.80407,,0.54962,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Finland,2017-12-04,Juvenile,Juvenile,Liver,Liver and Biliary System
64374,SRR14573849,SRX10917055,SRS9007192,SRP320241,PRJNA730648,Zebrafish liver transcriptome post DPHP exposure,PRJNA730648,Other,RNA seq data of adult zebrafish post exposure to DPHP,,,Three replications were sampled.,RNA Seq data of female zebrafish liver high dose,RNA Seq data of female zebrafish liver high dose,,strain:AB strain|isolate:multi individual|breed:Hatchery|age:Adult|sex:female|tissue:Liver|treatment:100 µg/L DPHP|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq data of female zebrafish liver high dose,RNA Seq data of female zebrafish liver high dose,RNA Seq data of female zebrafish liver high dose,Livers from three randomly selected zebrafish in 0  10  and 100 g/L exposure groups were used for transcriptomics analysis. The cDNA library was constructed with TruseqTM RNA sample prep Kit Illumina  and then next generation sequencing was performed on an Illumina HiSeq platform. Three replicates per treatment.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP320241,,,Y200623_YX20200602501_FL_H1_S26_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_H1_S26_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_H2_S27_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_H2_S27_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_H3_S28_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_H3_S28_L003_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq,22586261141.0,75026757.0,Y200623 YX20200602501 FL H1 S26 L003 R1 001.fastq.gz,0:150.52 1:150.52,A:5966831170;C:5235189646;G:5440132133;T:5943667623;N:440569,150,150,,,5966831170,5235189646,5440132133,5943667623,440569,SRX10917055,SRS9007192,SRA1233498,University of Saskatchewan|Toxicology center,University of Saskatchewan,2,0.95465,0.95265,0.02935,0.02906,0.82162,0.82582,0.21584,0.22167,150,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Canada,2021-05-18,Adult,Adult,Liver,Liver and Biliary System
64375,SRR14573850,SRX10917054,SRS9007191,SRP320241,PRJNA730648,Zebrafish liver transcriptome post DPHP exposure,PRJNA730648,Other,RNA seq data of adult zebrafish post exposure to DPHP,,,Three replications were sampled.,RNA Seq data of female zebrafish liver middle dose,RNA Seq data of female zebrafish liver middle dose,,strain:AB strain|isolate:multi individual|breed:Hatchery|age:Adult|sex:female|tissue:Liver|treatment:10 µg/L DPHP|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq data of female zebrafish liver middle dose,RNA Seq data of female zebrafish liver middle dose,RNA Seq data of female zebrafish liver middle dose,Livers from three randomly selected zebrafish in 0  10  and 100 g/L exposure groups were used for transcriptomics analysis. The cDNA library was constructed with TruseqTM RNA sample prep Kit Illumina  and then next generation sequencing was performed on an Illumina HiSeq platform. Three replicates per treatment.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP320241,,,Y200623_YX20200602501_FL_M1_S23_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_M1_S23_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_M2_S24_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_M2_S24_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_M3_S25_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_M3_S25_L003_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq,20865076029.0,69309201.0,Y200623 YX20200602501 FL M1 S23 L003 R1 001.fastq.gz,0:150.52 1:150.53,A:5514422779;C:4810621235;G:5041906998;T:5497718997;N:406020,150,150,,,5514422779,4810621235,5041906998,5497718997,406020,SRX10917054,SRS9007191,SRA1233498,University of Saskatchewan|Toxicology center,University of Saskatchewan,2,0.95192,0.94893,0.02787,0.02734,0.82838,0.83321,0.17526,0.17514,150,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Canada,2021-05-18,Adult,Adult,Liver,Liver and Biliary System
64376,SRR14573851,SRX10917053,SRS9007189,SRP320241,PRJNA730648,Zebrafish liver transcriptome post DPHP exposure,PRJNA730648,Other,RNA seq data of adult zebrafish post exposure to DPHP,,,Three replications were sampled.,RNA Seq data of female zebrafish liver Control,RNA Seq data of female zebrafish liver Control,,strain:AB strain|isolate:multi individual|breed:Hatchery|age:Adult|sex:female|tissue:Liver|treatment:Control|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq data of female zebrafish liver Control,RNA Seq data of female zebrafish liver Control,RNA Seq data of female zebrafish liver Control,Livers from three randomly selected zebrafish in 0  10  and 100 g/L exposure groups were used for transcriptomics analysis. The cDNA library was constructed with TruseqTM RNA sample prep Kit Illumina  and then next generation sequencing was performed on an Illumina HiSeq platform. Three replicates per treatment.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP320241,,,Y200623_YX20200602501_FL_C1_S20_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_C1_S20_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_C2_S21_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_C2_S21_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_C3_S22_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_C3_S22_L003_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq,21711359511.0,72120736.0,Y200623 YX20200602501 FL C1 S20 L003 R1 001.fastq.gz,0:150.52 1:150.52,A:5722156391;C:5030746535;G:5243968114;T:5714065791;N:422680,150,150,,,5722156391,5030746535,5243968114,5714065791,422680,SRX10917053,SRS9007189,SRA1233498,University of Saskatchewan|Toxicology center,University of Saskatchewan,2,0.95345,0.95236,0.02654,0.02588,0.84859,0.85107,0.21041,0.21327,149,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Canada,2021-05-18,Adult,Adult,Liver,Liver and Biliary System
64377,SRR14573852,SRX10917052,SRS9007190,SRP320241,PRJNA730648,Zebrafish liver transcriptome post DPHP exposure,PRJNA730648,Other,RNA seq data of adult zebrafish post exposure to DPHP,,,Three replications were sampled.,RNA Seq data of male zebrafish liver high dose,RNA Seq data of male zebrafish liver high dose,,strain:AB strain|isolate:multi individual|breed:Hatchery|age:Adult|sex:male|tissue:Liver|treatment:100 µg/L DPHP|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq data of male zebrafish liver high dose,RNA Seq data of male zebrafish liver high dose,RNA Seq data of male zebrafish liver high dose,Livers from three randomly selected zebrafish in 0  10  and 100 g/L exposure groups were used for transcriptomics analysis. The cDNA library was constructed with TruseqTM RNA sample prep Kit Illumina  and then next generation sequencing was performed on an Illumina HiSeq platform. Three replicates per treatment.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP320241,,,Y200623_YX20200602501_ML_H1_S17_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_H1_S17_L003_R2_001.fastq.gz Y200623_YX20200602501_ML_H2_S18_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_H2_S18_L003_R2_001.fastq.gz Y200623_YX20200602501_ML_H3_S19_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_H3_S19_L003_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq,23374319525.0,77636248.0,Y200623 YX20200602501 ML H1 S17 L003 R1 001.fastq.gz,0:150.53 1:150.54,A:6183698501;C:5390428654;G:5652431531;T:6147306148;N:454691,150,150,,,6183698501,5390428654,5652431531,6147306148,454691,SRX10917052,SRS9007190,SRA1233498,University of Saskatchewan|Toxicology center,University of Saskatchewan,2,0.9446,0.93144,0.05999,0.05886,0.78638,0.78823,0.54835,0.54306,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Canada,2021-05-18,Adult,Adult,Liver,Liver and Biliary System
64378,SRR14573853,SRX10917051,SRS9007187,SRP320241,PRJNA730648,Zebrafish liver transcriptome post DPHP exposure,PRJNA730648,Other,RNA seq data of adult zebrafish post exposure to DPHP,,,Three replications were sampled.,RNA Seq data of male zebrafish liver middle dose,RNA Seq data of male zebrafish liver middle dose,,strain:AB strain|isolate:multi individual|breed:Hatchery|age:Adult|sex:male|tissue:Liver|treatment:10 µg/L DPHP|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq data of male zebrafish liver middle dose,RNA Seq data of male zebrafish liver middle dose,RNA Seq data of male zebrafish liver middle dose,Livers from three randomly selected zebrafish in 0  10  and 100 g/L exposure groups were used for transcriptomics analysis. The cDNA library was constructed with TruseqTM RNA sample prep Kit Illumina  and then next generation sequencing was performed on an Illumina HiSeq platform. Three replicates per treatment.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP320241,,,Y200623_YX20200602501_ML_M1_S14_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_M1_S14_L003_R2_001.fastq.gz Y200623_YX20200602501_ML_M2_S15_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_M2_S15_L003_R2_001.fastq.gz Y200623_YX20200602501_ML_M3_S16_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_M3_S16_L003_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq,21827227168.0,72498761.0,Y200623 YX20200602501 ML M1 S14 L003 R1 001.fastq.gz,0:150.53 1:150.54,A:5794195561;C:5031939032;G:5230990660;T:5769676672;N:425243,150,150,,,5794195561,5031939032,5230990660,5769676672,425243,SRX10917051,SRS9007187,SRA1233498,University of Saskatchewan|Toxicology center,University of Saskatchewan,2,0.94346,0.9327,0.05867,0.05676,0.7822,0.78719,0.52746,0.51339,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Canada,2021-05-18,Adult,Adult,Liver,Liver and Biliary System
64379,SRR14573854,SRX10917050,SRS9007188,SRP320241,PRJNA730648,Zebrafish liver transcriptome post DPHP exposure,PRJNA730648,Other,RNA seq data of adult zebrafish post exposure to DPHP,,,Three replications were sampled.,RNA Seq data of male zebrafish liver Control,RNA Seq data of male zebrafish liver Control,,strain:AB strain|isolate:multi individual|breed:Hatchery|age:Adult|sex:male|tissue:Liver|treatment:Control|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq data of male zebrafish liver Control,RNA Seq data of male zebrafish liver Control,RNA Seq data of male zebrafish liver Control,Livers from three randomly selected zebrafish in 0  10  and 100 g/L exposure groups were used for transcriptomics analysis. The cDNA library was constructed with TruseqTM RNA sample prep Kit Illumina  and then next generation sequencing was performed on an Illumina HiSeq platform. Three replicates per treatment.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP320241,,,Y200623_YX20200602501_ML_C1_S11_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_C1_S11_L003_R2_001.fastq.gz Y200623_YX20200602501_ML_C2_S12_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_C2_S12_L003_R2_001.fastq.gz Y200623_YX20200602501_ML_C3_S13_L003_R1_001.fastq.gz Y200623_YX20200602501_ML_C3_S13_L003_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq,23245717288.0,77202420.0,Y200623 YX20200602501 ML C1 S11 L003 R1 001.fastq.gz,0:150.54 1:150.56,A:6312249187;C:5214214833;G:5486390844;T:6232408830;N:453594,150,150,,,6312249187,5214214833,5486390844,6232408830,453594,SRX10917050,SRS9007188,SRA1233498,University of Saskatchewan|Toxicology center,University of Saskatchewan,2,0.93673,0.9246,0.06889,0.06779,0.80594,0.80977,0.5172,0.51844,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Canada,2021-05-18,Adult,Adult,Liver,Liver and Biliary System