rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
34127,SRR31359854,SRX26733717,SRS23223868,SRP545360,PRJNA1186345,The pronephros/cloaca development difference between WT and gdf11 mutants at 24 hpf,PRJNA1186345,Other,To identify specific genes or signaling pathways or genes with altered expression in pronephric ducts and cloaca in the absence of Gdf11  we analyzed transcriptomic changes using RNA deep sequencing on WT and gdf11 mutant embryos in Tgcdh17 dsRed background at 24 hpf.,,,,,LJW KV FKDL210002409 1a,,strain:LJW KV FKDL210002409 1a|isolate:zebrafish|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|collection date:2024 02 18|geo loc name:China: Anhui Medical University  Hefei|sex:not applicable|tissue:zebrafish|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish mRNA sequencing,LJW KV FKDL210002409 1a,LJW KV FKDL210002409 1a,RNA seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP545360,,,LJW-KV_FKDL210002409-1a_1.clean.fq.gz LJW-KV_FKDL210002409-1a_2.clean.fq.gz,fastq fastq,8667883500.0,28892945.0,LJW KV FKDL210002409 1a 1.clean.fq.gz,0:150 1:150,A:2771307253;C:1399313804;G:1767761135;T:2729383521;N:117787,150,150,,,2771307253,1399313804,1767761135,2729383521,117787,SRX26733717,SRS23223868,SRA2015444,Anhui Medical University|Basical Medicine,Anhui Medical University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-15,Undetermined,Embryo,Undetermined,Embryo Imprecise