rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 39629,SRR1947863,SRX981062,SRS889614,SRP056748,PRJNA279991,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,PRJNA279991,Other,Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.,,,,Danio rerio injected with mespaa morpholino 5.5hpf,Zebrafish injected with mespaa morpholino,,strain:Ekkwill|dev stage:5.5hpf|sex:pooled male and female|tissue:whole embryo|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,Zebrafish injected with mespaa morpholino replicate 2,Zebrafish injected with mespaa morpholino replicate 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP056748,,loader:latf load,Mespa-230413_TGTGAA_L008_R2.fastq.gz Mespa-230413_TGTGAA_L008_R1.fastq.gz,fastq fastq,7275994449.0,42132158.0,RNAseq Danio rerio 5.5hpf mespaa morpholino replicate2,0:101 1:101,A:2058072859;C:1476303521;G:1525105443;T:2088915957;N:127596669,101,101,,,2058072859,1476303521,1525105443,2088915957,127596669,SRX981062,SRS889614,SRA249481,Gladstone Institute|Bioinformatics,Gladstone Institutes,2,0.86631,0.83649,0.14484,0.22396,0.78861,0.90727,0.65055,0.64516,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United States,2015-04-07,Gastrula,Embryo,Whole Organism,All anatomical structures 39630,SRR1947880,SRX981061,SRS895863,SRP056748,PRJNA279991,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,PRJNA279991,Other,Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.,,,,Danio rerio injected with negative control morpholino 5.5hpf,Zebrafish injected with untargeted negative control morpholino,,strain:Ekkwill|dev stage:5.5 hpf|sex:pooled male and female|tissue:whole embryo|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,Zebrafish injected with untargeted negative control morpholino replicate 2,Zebrafish injected with untargeted negative control morpholino replicate 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP056748,,loader:latf load,Std-230413_GTGTTA_L008_R1.fastq.gz Std-230413_GTGTTA_L008_R2.fastq.gz,fastq fastq,10015452496.0,49581448.0,RNAseq Danio rerio 5.5hpf negative control morpholino replicate2,0:101 1:101,A:2883382922;C:1998043392;G:2046542450;T:2937071125;N:150412607,101,101,,,2883382922,1998043392,2046542450,2937071125,150412607,SRX981061,SRS895863,SRA249481,Gladstone Institute|Bioinformatics,Gladstone Institutes,2,0.8766,0.85002,0.17158,0.25762,0.77167,0.89057,0.64584,0.66342,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United States,2016-03-31,Gastrula,Embryo,Whole Organism,All anatomical structures 39631,SRR1947876,SRX981011,SRS895863,SRP056748,PRJNA279991,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,PRJNA279991,Other,Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.,,,,Danio rerio injected with negative control morpholino 5.5hpf,Zebrafish injected with untargeted negative control morpholino,,strain:Ekkwill|dev stage:5.5 hpf|sex:pooled male and female|tissue:whole embryo|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,Zebrafish injected with untargeted negative control morpholino,Zebrafish injected with untargeted negative control morpholino replicate 1,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP056748,,loader:latf load,Std-190413_ACACGA_L008_R2.fastq.gz Std-190413_ACACGA_L008_R1.fastq.gz,fastq fastq,10412449358.0,51546779.0,RNAseq Danio rerio 5.5hpf negative control morpholino replicate1,0:101 1:101,A:2998996009;C:2064995108;G:2125498634;T:3066600855;N:156358752,101,101,,,2998996009,2064995108,2125498634,3066600855,156358752,SRX981011,SRS895863,SRA249481,Gladstone Institute|Bioinformatics,Gladstone Institutes,2,0.87394,0.84802,0.15672,0.23447,0.77072,0.89049,0.63241,0.65533,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United States,2016-03-31,Gastrula,Embryo,Whole Organism,All anatomical structures 39632,SRR1947862,SRX974390,SRS889614,SRP056748,PRJNA279991,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,PRJNA279991,Other,Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.,,,,Danio rerio injected with mespaa morpholino 5.5hpf,Zebrafish injected with mespaa morpholino,,strain:Ekkwill|dev stage:5.5hpf|sex:pooled male and female|tissue:whole embryo|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality,RNAseq analysis of mespaa knockdown embryos,Zebrafish injected with mespaa morpholino replicate 1,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,1000Application ReadForward1,SRP056748,,loader:latf load,Mespa-190413_CACACA_L008_R2.fastq.gz Mespa-190413_CACACA_L008_R1.fastq.gz,fastq fastq,715965164.0,3668538.0,RNAseq Danio rerio 5.5hpf mespaa morpholino replicate1,0:101 1:101,A:203464307;C:144071219;G:148845038;T:209200873;N:10383727,101,101,,,203464307,144071219,148845038,209200873,10383727,SRX974390,SRS889614,SRA249481,Gladstone Institute|Bioinformatics,Gladstone Institutes,2,0.86222,0.8307,0.14165,0.17545,0.7624,0.84415,0.65454,0.64758,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United States,2015-04-07,Gastrula,Embryo,Whole Organism,All anatomical structures 41309,SRR4242454,SRX2163334,SRS1691357,SRP089876,PRJNA341782,Danio rerio Phenotype or Genotype,PRJNA341782,Other,Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.,,,,,ho 160,,strain:TU|isolate:homozygous|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN|birth date:2015 05 01|genotype:homozygous|phenotype:small head abnormal vascular system|treatment:in vivo protein trap mutagenesis|BioSampleModel:Model organism or animal,,,,,,,,,1,ho 160,ho 160,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP089876,,,HO.fq.gz,fastq,568688414.0,11605886.0,HO.fq.gz,0:49,A:146833011;C:136838940;G:142141532;T:142831489;N:43442,49,,,,146833011,136838940,142141532,142831489,43442,SRX2163334,SRS1691357,SRA471230,Guangdong Ocean University|Fisheries College,Guangdong Ocean University,1,0.92072,,0.03662,,0.79584,,0.46051,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-09-14,Larval,Larval,Whole Organism,All anatomical structures 41310,SRR4242453,SRX2163333,SRS1691356,SRP089876,PRJNA341782,Danio rerio Phenotype or Genotype,PRJNA341782,Other,Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.,,,,,he 160,,strain:TU|isolate:heterozygous|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN|birth date:2015 05 01|genotype:heterozygous|phenotype:normal|treatment:in vivo protein trap mutagenesis|BioSampleModel:Model organism or animal,,,,,,,,,1,he 160,he 160,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP089876,,,HE.fq,fastq,578835432.0,11812968.0,HE.fq,0:49,A:149797321;C:137638814;G:143656076;T:147699087;N:44134,49,,,,149797321,137638814,143656076,147699087,44134,SRX2163333,SRS1691356,SRA471230,Guangdong Ocean University|Fisheries College,Guangdong Ocean University,1,0.96392,,0.03868,,0.71064,,0.48997,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-09-19,Larval,Larval,Whole Organism,All anatomical structures 41311,SRR4242452,SRX2163332,SRS1691355,SRP089876,PRJNA341782,Danio rerio Phenotype or Genotype,PRJNA341782,Other,Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.,,,,,wt 160,,strain:TU|isolate:wild type|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN|birth date:2015 05 01|genotype:wild type|phenotype:normal|BioSampleModel:Model organism or animal,,,,,,,,,1,wt 160,wt 160,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP089876,,,WT.fq.gz,fastq,582208151.0,11881799.0,WT.fq.gz,0:49,A:151848733;C:138129346;G:143758419;T:148430704;N:40949,49,,,,151848733,138129346,143758419,148430704,40949,SRX2163332,SRS1691355,SRA471230,Guangdong Ocean University|Fisheries College,Guangdong Ocean University,1,0.95342,,0.04301,,0.75503,,0.48726,,49,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-09-19,Larval,Larval,Whole Organism,All anatomical structures 41349,SRR4330940,SRX2205508,SRS1723862,SRP090717,PRJNA345071,Transcriptome sequencing of zebrafish mutants,PRJNA345071,Other,To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.,,,,,ZIS 3,,strain:mutant biological replicate 3|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish mutant at 10 dpf,ZIS 3,ZIS 3,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP090717,,,ZIS-3_S41_L003_R1_001.fastq ZIS-3_S41_L003_R2_001.fastq,fastq fastq,8951074036.0,29639318.0,ZIS 3 S41 L003 R1 001.fastq,0:151 1:151,A:2283207699;C:2181203331;G:2250920956;T:2233298555;N:2443495,151,151,,,2283207699,2181203331,2250920956,2233298555,2443495,SRX2205508,SRS1723862,SRA481515,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.94568,0.94599,0.04792,0.04705,0.68511,0.69191,0.48349,0.49441,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-12-31,Larval,Larval,Whole Organism,All anatomical structures 41350,SRR4330939,SRX2205507,SRS1723861,SRP090717,PRJNA345071,Transcriptome sequencing of zebrafish mutants,PRJNA345071,Other,To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.,,,,,ZIS 2,,strain:mutant biological replicate 2|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish mutant at 10 dpf,ZIS 2,ZIS 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP090717,,,ZIS-2_S40_L003_R1_001.fastq ZIS-2_S40_L003_R2_001.fastq,fastq fastq,9435991208.0,31245004.0,ZIS 2 S40 L003 R2 001.fastq,0:151 1:151,A:2432777029;C:2274473737;G:2351228268;T:2374883671;N:2628503,151,151,,,2432777029,2274473737,2351228268,2374883671,2628503,SRX2205507,SRS1723861,SRA481515,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93852,0.93895,0.06814,0.06752,0.67464,0.68185,0.4731,0.48737,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-12-31,Larval,Larval,Whole Organism,All anatomical structures 41351,SRR4330938,SRX2205506,SRS1723859,SRP090717,PRJNA345071,Transcriptome sequencing of zebrafish mutants,PRJNA345071,Other,To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.,,,,,ZIS 1,,strain:mutant biological replicate 1|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish mutant at 10 dpf,ZIS 1,ZIS 1,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP090717,,,ZIS-1_S58_L004_R1_001.fastq ZIS-1_S58_L004_R2_001.fastq,fastq fastq,9474125956.0,31371278.0,ZIS 1 S58 L004 R1 001.fastq,0:151 1:151,A:2432127105;C:2294541938;G:2369906198;T:2374445988;N:3104727,151,151,,,2432127105,2294541938,2369906198,2374445988,3104727,SRX2205506,SRS1723859,SRA481515,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.94217,0.94136,0.05812,0.05769,0.67957,0.68665,0.48986,0.48912,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-12-31,Larval,Larval,Whole Organism,All anatomical structures 41352,SRR4330937,SRX2205505,SRS1723863,SRP090717,PRJNA345071,Transcriptome sequencing of zebrafish mutants,PRJNA345071,Other,To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.,,,,,WT 3,,strain:wild type biological replicate 3|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 10 dpf,WT 3,WT 3,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP090717,,,WT-3_S59_L004_R1_001.fastq WT-3_S59_L004_R2_001.fastq,fastq fastq,9459728710.0,31323605.0,WT 3 S59 L004 R2 001.fastq,0:151 1:151,A:2435834973;C:2283457751;G:2353515662;T:2383834638;N:3085686,151,151,,,2435834973,2283457751,2353515662,2383834638,3085686,SRX2205505,SRS1723863,SRA481515,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93703,0.93671,0.06932,0.06902,0.67815,0.68527,0.49406,0.48629,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-12-31,Larval,Larval,Whole Organism,All anatomical structures 41353,SRR4330936,SRX2205504,SRS1723860,SRP090717,PRJNA345071,Transcriptome sequencing of zebrafish mutants,PRJNA345071,Other,To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.,,,,,WT 2,,strain:wild type biological replicate 2|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 10 dpf,WT 2,WT 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP090717,,,WT-2_S39_L003_R1_001.fastq WT-2_S39_L003_R2_001.fastq,fastq fastq,8115257628.0,26871714.0,WT 2 S39 L003 R1 001.fastq,0:151 1:151,A:2056302105;C:1991691115;G:2061808328;T:2003236611;N:2219469,151,151,,,2056302105,1991691115,2061808328,2003236611,2219469,SRX2205504,SRS1723860,SRA481515,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9479,0.94848,0.03505,0.0349,0.69946,0.70638,0.4871,0.48737,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-12-31,Larval,Larval,Whole Organism,All anatomical structures 41354,SRR4330935,SRX2205503,SRS1723858,SRP090717,PRJNA345071,Transcriptome sequencing of zebrafish mutants,PRJNA345071,Other,To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.,,,,,WT 1,,strain:wild type biological replicate 1|dev stage:10 dpf|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2015 08|breeding method:?artificial insemination|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 10 dpf,WT 1,WT 1,To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP090717,,,WT-1_S38_L003_R1_001.fastq WT-1_S38_L003_R2_001.fastq,fastq fastq,9771991274.0,32357587.0,WT 1 S38 L003 R2 001.fastq,0:151 1:151,A:2524417259;C:2348903783;G:2421563752;T:2474419170;N:2687310,151,151,,,2524417259,2348903783,2421563752,2474419170,2687310,SRX2205503,SRS1723858,SRA481515,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93787,0.93896,0.0697,0.06907,0.67446,0.68162,0.49385,0.49554,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-12-31,Larval,Larval,Whole Organism,All anatomical structures 41603,SRR5086607,SRX2403900,SRS1843204,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,RIP2 Etarda 2,,isolate:RIP2 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RIP2 mutant at 7 dpf,RIP2 Etarda 2,RIP2 Etarda 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R2.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R1.fastq.gz,fastq fastq,12903564000.0,43011880.0,S231 07B CHG009012 0413lane6 RP E tarda 2 L003 R1.fastq.gz,0:150 1:150,A:3540121379;C:2905716861;G:3027503729;T:3429809429;N:412602,150,150,,,3540121379,2905716861,3027503729,3429809429,412602,SRX2403900,SRS1843204,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.91895,0.92448,0.22816,0.22865,0.6873,0.69104,0.59821,0.59683,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-12-08,Larval,Larval,Whole Organism,All anatomical structures 41604,SRR5086606,SRX2403899,SRS1843203,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,NOD1 Etarda 1,,isolate:NOD1 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish NOD1 mutant at 7 dpf,NOD1 Etarda 1,NOD1 Etarda 1,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R2.fastq.gz,fastq fastq,12320572500.0,41068575.0,S231 07B CHG009012 0413lane6 ND E tarda 1 L003 R1.fastq.gz,0:150 1:150,A:3355646078;C:2797387103;G:2920550779;T:3246590603;N:397937,150,150,,,3355646078,2797387103,2920550779,3246590603,397937,SRX2403899,SRS1843203,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.86604,0.87043,0.20071,0.20146,0.69369,0.69869,0.5907,0.59843,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41605,SRR5086605,SRX2403898,SRS1843202,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,NOD1 Etarda 2,,isolate:NOD1 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish NOD1 mutant at 7 dpf,NOD1 Etarda 2,NOD1 Etarda 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R2.fastq.gz,fastq fastq,15551299800.0,51837666.0,S231 07B CHG009012 0413lane6 ND E tarda 2 L003 R1.fastq.gz,0:150 1:150,A:4265070757;C:3495006741;G:3648563581;T:4142124454;N:534267,150,150,,,4265070757,3495006741,3648563581,4142124454,534267,SRX2403898,SRS1843202,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.86759,0.86834,0.23528,0.23586,0.68779,0.69272,0.57804,0.57769,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41606,SRR5086604,SRX2403897,SRS1843201,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,RIP2 Etarda 3,,isolate:RIP2 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RIP2 mutant at 7 dpf,RIP2 Etarda 3,RIP2 Etarda 3,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R2.fastq.gz,fastq fastq,12144058200.0,40480194.0,S231 07B CHG009012 0413lane6 RP E tarda 3 L003 R1.fastq.gz,0:150 1:150,A:3277198817;C:2779538400;G:2897367228;T:3189540397;N:413358,150,150,,,3277198817,2779538400,2897367228,3189540397,413358,SRX2403897,SRS1843201,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.91654,0.9175,0.25593,0.25637,0.68795,0.69414,0.56468,0.56806,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41607,SRR5086603,SRX2403896,SRS1843200,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,WT Etarda 3,,isolate:wild type biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 7 dpf,WT Etarda 3,WT Etarda 3,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R2.fastq.gz,fastq fastq,13158784200.0,43862614.0,S231 07B CHG009012 0413lane6 WT E tarda 3 L003 R1.fastq.gz,0:150 1:150,A:3492740553;C:3076792456;G:3216533074;T:3372287751;N:430366,150,150,,,3492740553,3076792456,3216533074,3372287751,430366,SRX2403896,SRS1843200,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.91602,0.92416,0.23246,0.23514,0.68164,0.68663,0.55407,0.55215,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41608,SRR5086602,SRX2403895,SRS1843199,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,WT Etarda 1,,isolate:wild type biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 7dpf,WT Etarda 1,WT Etarda 1,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R2.fastq.gz,fastq fastq,11991766500.0,39972555.0,S231 07B CHG009012 0413lane6 WT E tarda 1 L003 R1.fastq.gz,0:150 1:150,A:3282107515;C:2699757677;G:2810716102;T:3198780035;N:405171,150,150,,,3282107515,2699757677,2810716102,3198780035,405171,SRX2403895,SRS1843199,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.91731,0.91778,0.23094,0.23042,0.6784,0.68596,0.59413,0.59241,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41609,SRR5086601,SRX2403894,SRS1843198,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,NOD1 Etarda 3,,isolate:NOD1 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish NOD1 mutant at 7 dpf,NOD1 Etarda 3,NOD1 Etarda 3,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R2.fastq.gz,fastq fastq,13231011300.0,44103371.0,S231 07B CHG009012 0413lane6 ND E tarda 3 L003 R1.fastq.gz,0:150 1:150,A:3583948856;C:3022120866;G:3144073054;T:3480438095;N:430429,150,150,,,3583948856,3022120866,3144073054,3480438095,430429,SRX2403894,SRS1843198,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.8625,0.86327,0.21095,0.21123,0.69126,0.69808,0.59807,0.59873,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41610,SRR5086600,SRX2403893,SRS1843197,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,WT Etarda 2,,isolate:wild type biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 7 dpf,WT Etarda 2,WT Etarda 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R2.fastq.gz,fastq fastq,11385997200.0,37953324.0,S231 07B CHG009012 0413lane6 WT E tarda 2 L003 R1.fastq.gz,0:150 1:150,A:3100666193;C:2581361422;G:2676308702;T:3027299840;N:361043,150,150,,,3100666193,2581361422,2676308702,3027299840,361043,SRX2403893,SRS1843197,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.91592,0.91843,0.23215,0.23276,0.67894,0.6843,0.56756,0.57405,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41611,SRR5086599,SRX2403892,SRS1843196,SRP094738,PRJNA356682,Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection,PRJNA356682,Other,To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.,,,,,RIP2 Etarda 1,,isolate:RIP2 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RIP2 mutant at 7 dpf,RIP2 Etarda 1,RIP2 Etarda 1,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP094738,,,S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R2.fastq.gz,fastq fastq,12517987200.0,41726624.0,S231 07B CHG009012 0413lane6 RP E tarda 1 L003 R1.fastq.gz,0:150 1:150,A:3383702176;C:2864897363;G:2969958296;T:3299042555;N:386810,150,150,,,3383702176,2864897363,2969958296,3299042555,386810,SRX2403892,SRS1843196,SRA501516,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92847,0.93046,0.20764,0.20908,0.68217,0.68889,0.58846,0.59063,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-11-27,Larval,Larval,Whole Organism,All anatomical structures 41754,SRR5131065,SRX2444929,SRS1878801,SRP095651,PRJNA358793,Transcriptome sequencing of zebrafish RIP2 mutants,PRJNA358793,Other,Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.,,,,,control 3,,isolate:wild type biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 7 dpf,control 3,control 3,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP095651,,,S231_07B_CHG009010-0413lane4-WT-3_L001_R2.fastq.gz S231_07B_CHG009010-0413lane4-WT-3_L001_R1.fastq.gz,fastq fastq,7170870300.0,23902901.0,S231 07B CHG009010 0413lane4 WT 3 L001 R2.fastq.gz,0:150 1:150,A:1861223343;C:1713993670;G:1720465419;T:1875067010;N:120858,150,150,,,1861223343,1713993670,1720465419,1875067010,120858,SRX2444929,SRS1878801,SRA510115,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93719,0.93331,0.07804,0.07734,0.66478,0.67152,0.48991,0.48846,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-12-25,Larval,Larval,Whole Organism,All anatomical structures 41755,SRR5131064,SRX2444928,SRS1878800,SRP095651,PRJNA358793,Transcriptome sequencing of zebrafish RIP2 mutants,PRJNA358793,Other,Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.,,,,,RP 3,,isolate:RIP2 mutant biological replicate 3|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RIP2 mutant at 7 dpf,RP 3,RP 3,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP095651,,,S231_07B_CHG009010-0413lane4-RP-3_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-3_L001_R2.fastq.gz,fastq fastq,7468205400.0,24894018.0,S231 07B CHG009010 0413lane4 RP 3 L001 R1.fastq.gz,0:150 1:150,A:1923116988;C:1800729614;G:1804880487;T:1939349442;N:128869,150,150,,,1923116988,1800729614,1804880487,1939349442,128869,SRX2444928,SRS1878800,SRA510115,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.94182,0.93791,0.07003,0.06911,0.67391,0.68032,0.48725,0.48383,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-12-21,Larval,Larval,Whole Organism,All anatomical structures 41756,SRR5131063,SRX2444927,SRS1878799,SRP095651,PRJNA358793,Transcriptome sequencing of zebrafish RIP2 mutants,PRJNA358793,Other,Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.,,,,,control 1,,isolate:wild type biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 7dpf,control 1,control 1,To investigate the possible mechanism that RIP2 impacts immune response in zebrafish we performed transcriptome analysis. Zebrafish larvae from WT and RIP / were collected at 7 dpf.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP095651,,,S231_07B_CHG009010-0413lane4-WT-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-1_L001_R2.fastq.gz,fastq fastq,7794774600.0,25982582.0,S231 07B CHG009010 0413lane4 WT 1 L001 R1.fastq.gz,0:150 1:150,A:2030478380;C:1854310335;G:1862519444;T:2047324790;N:141651,150,150,,,2030478380,1854310335,1862519444,2047324790,141651,SRX2444927,SRS1878799,SRA510115,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.94149,0.93653,0.07296,0.07218,0.66614,0.67294,0.49615,0.48813,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-12-21,Larval,Larval,Whole Organism,All anatomical structures 41757,SRR5131062,SRX2444926,SRS1878798,SRP095651,PRJNA358793,Transcriptome sequencing of zebrafish RIP2 mutants,PRJNA358793,Other,Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.,,,,,control 2,,isolate:wild type biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish wildtype at 7 dpf,control 2,control 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP095651,,,S231_07B_CHG009010-0413lane4-WT-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-2_L001_R2.fastq.gz,fastq fastq,5623326600.0,18744422.0,S231 07B CHG009010 0413lane4 WT 2 L001 R2.fastq.gz,0:150 1:150,A:1451164902;C:1350358314;G:1359170147;T:1462531546;N:101691,150,150,,,1451164902,1350358314,1359170147,1462531546,101691,SRX2444926,SRS1878798,SRA510115,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93864,0.93904,0.06797,0.06755,0.67048,0.67521,0.49371,0.48819,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-12-21,Larval,Larval,Whole Organism,All anatomical structures 41758,SRR5131061,SRX2444925,SRS1878797,SRP095651,PRJNA358793,Transcriptome sequencing of zebrafish RIP2 mutants,PRJNA358793,Other,Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.,,,,,RP 1,,isolate:RIP2 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RIP2 mutant at 7 dpf,RP 1,RP 1,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP095651,,,S231_07B_CHG009010-0413lane4-RP-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-1_L001_R2.fastq.gz,fastq fastq,8583762600.0,28612542.0,S231 07B CHG009010 0413lane4 RP 1 L001 R2.fastq.gz,0:150 1:150,A:2233488442;C:2047436003;G:2053585249;T:2249097620;N:155286,150,150,,,2233488442,2047436003,2053585249,2249097620,155286,SRX2444925,SRS1878797,SRA510115,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.94045,0.93559,0.08356,0.0825,0.66576,0.67188,0.48456,0.48745,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-12-21,Larval,Larval,Whole Organism,All anatomical structures 41759,SRR5131060,SRX2444924,SRS1878796,SRP095651,PRJNA358793,Transcriptome sequencing of zebrafish RIP2 mutants,PRJNA358793,Other,Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.,,,,,RP 2,,isolate:RIP2 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RIP2 mutant at 7 dpf,RP 2,RP 2,1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP095651,,,S231_07B_CHG009010-0413lane4-RP-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-2_L001_R2.fastq.gz,fastq fastq,6660884700.0,22202949.0,S231 07B CHG009010 0413lane4 RP 2 L001 R1.fastq.gz,0:150 1:150,A:1716524391;C:1604826566;G:1610050455;T:1729364340;N:118948,150,150,,,1716524391,1604826566,1610050455,1729364340,118948,SRX2444924,SRS1878796,SRA510115,"Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.94509,0.94069,0.07191,0.0702,0.67322,0.68045,0.4937,0.4864,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-12-21,Larval,Larval,Whole Organism,All anatomical structures 60445,SRR12272862,SRX8777892,SRS7048444,SRP272672,PRJNA647444,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA,PRJNA647444,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C2,C2 C2 2 4,,replicate:biological replicate 2|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C2C220200712,C2C220200712,RNA seq of zebrafish in different conditions,,,miRNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP272672,,loader:fastq load.py,C2_C2_2_4.fq,fastq,542610936.0,21965958.0,C2 C2 2 4.fq.gz,0:24.70,A:95221617;C:122628624;G:167025611;T:157730855;N:4229,24,,,,95221617,122628624,167025611,157730855,4229,SRX8777892,SRS7048444,SRA1101037,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.8119,,0.10745,,0.85717,,0.51338,,22,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-08-05,Undetermined,Embryo,Whole Organism,All anatomical structures 60446,SRR12272863,SRX8777891,SRS7048443,SRP272672,PRJNA647444,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA,PRJNA647444,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C2,C2 C2 1 4,,replicate:biological replicate 1|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C2C220200711,C2C220200711,RNA seq of zebrafish in different conditions,,,miRNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP272672,,loader:fastq load.py,C2_C2_1_4.fq,fastq,542847476.0,22614181.0,C2 C2 1 4.fq.gz,0:24.00,A:99999101;C:125407906;G:162383758;T:155055099;N:1612,24,,,,99999101,125407906,162383758,155055099,1612,SRX8777891,SRS7048443,SRA1101037,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.84327,,0.10491,,0.83256,,0.52046,,19,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-08-05,Undetermined,Embryo,Whole Organism,All anatomical structures 60447,SRR12272864,SRX8777890,SRS7048442,SRP272672,PRJNA647444,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA,PRJNA647444,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C1,C1 C1 2 4,,replicate:biological replicate 2|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C1C120200712,C1C120200712,RNA seq of zebrafish in different conditions,,,miRNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP272672,,loader:fastq load.py,C1_C1_2_4.fq,fastq,570918284.0,22577002.0,C1 C1 2 4.fq.gz,0:25.29,A:100121235;C:130480588;G:178656113;T:161652765;N:7583,25,,,,100121235,130480588,178656113,161652765,7583,SRX8777890,SRS7048442,SRA1101037,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.85096,,0.12542,,0.82873,,0.51535,,22,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-08-05,Undetermined,Embryo,Whole Organism,All anatomical structures 60448,SRR12272865,SRX8777889,SRS7048441,SRP272672,PRJNA647444,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA,PRJNA647444,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C1,C1 C1 1 4,,replicate:biological replicate 1|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C1C120200711,C1C120200711,RNA seq of zebrafish in different conditions,,,miRNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP272672,,loader:fastq load.py,C1_C1_1_4.fq,fastq,545089417.0,22812164.0,C1 C1 1 4.fq.gz,0:23.89,A:99851844;C:125314095;G:166401335;T:153521167;N:976,23,,,,99851844,125314095,166401335,153521167,976,SRX8777889,SRS7048441,SRA1101037,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.84602,,0.11725,,0.83159,,0.51353,,19,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-08-05,Undetermined,Embryo,Whole Organism,All anatomical structures 60449,SRR12272866,SRX8777888,SRS7048440,SRP272672,PRJNA647444,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA,PRJNA647444,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C0,C0 C0 2 4,,replicate:biological replicate 2|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C0C020200712,C0C020200712,RNA seq of zebrafish in different conditions,,,miRNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP272672,,loader:fastq load.py,C0_C0_2_4.fq,fastq,527443144.0,23174740.0,C0 C0 2 4.fq.gz,0:22.76,A:102368401;C:120843229;G:151690193;T:152540806;N:515,22,,,,102368401,120843229,151690193,152540806,515,SRX8777888,SRS7048440,SRA1101037,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.83063,,0.08114,,0.85169,,0.50894,,16,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-08-05,Undetermined,Embryo,Whole Organism,All anatomical structures 60450,SRR12272867,SRX8777887,SRS7048439,SRP272672,PRJNA647444,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA,PRJNA647444,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C0,C0 C0 1 4,,replicate:biological replicate 1|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C0C020200711,C0C020200711,RNA seq of zebrafish in different conditions,,,miRNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP272672,,loader:fastq load.py,C0_C0_1_4.fq,fastq,511759408.0,22673361.0,C0 C0 1 4.fq.gz,0:22.57,A:100879182;C:120237907;G:142799495;T:147842595;N:229,22,,,,100879182,120237907,142799495,147842595,229,SRX8777887,SRS7048439,SRA1101037,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.83904,,0.0823,,0.84741,,0.49929,,22,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-08-05,Undetermined,Embryo,Whole Organism,All anatomical structures 60496,SRR12328853,SRX8829078,SRS7048444,SRP273655,PRJNA648800,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA,PRJNA648800,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C2,C2 C2 2 4,,replicate:biological replicate 2|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C2C220200712,C2C220200712,RNA seq of zebrafish in different conditions,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP273655,,,C2_C2_2_4_1.fq.gz C2_C2_2_4_2.fq.gz,fastq fastq,6974294600.0,69742946.0,C2 C2 2 4 1.fq.gz,0:100 1:100,A:2057162032;C:1418016219;G:1425580374;T:2073535975;N:0,100,100,,,2057162032,1418016219,1425580374,2073535975,0,SRX8829078,SRS7048444,SRA1103962,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.93171,,0.17455,,0.71626,,0.54961,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-07-27,Undetermined,Embryo,Whole Organism,All anatomical structures 60497,SRR12328854,SRX8829077,SRS7048443,SRP273655,PRJNA648800,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA,PRJNA648800,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C2,C2 C2 1 4,,replicate:biological replicate 1|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C2C220200711,C2C220200711,RNA seq of zebrafish in different conditions,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP273655,,,C2_C2_1_4_2.fq.gz C2_C2_1_4_1.fq.gz,fastq fastq,6942905200.0,69429052.0,C2 C2 1 4 1.fq.gz,0:100 1:100,A:2025129308;C:1433430820;G:1434784226;T:2049560846;N:0,100,100,,,2025129308,1433430820,1434784226,2049560846,0,SRX8829077,SRS7048443,SRA1103962,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.93211,,0.16662,,0.71001,,0.53674,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-07-27,Undetermined,Embryo,Whole Organism,All anatomical structures 60498,SRR12328855,SRX8829076,SRS7048442,SRP273655,PRJNA648800,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA,PRJNA648800,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C1,C1 C1 2 4,,replicate:biological replicate 2|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C1C120200712,C1C120200712,RNA seq of zebrafish in different conditions,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP273655,,,C1_C1_2_4_1.fq.gz C1_C1_2_4_2.fq.gz,fastq fastq,6973657600.0,69736576.0,C1 C1 2 4 1.fq.gz,0:100 1:100,A:2050440259;C:1423350359;G:1423015668;T:2076851314;N:0,100,100,,,2050440259,1423350359,1423015668,2076851314,0,SRX8829076,SRS7048442,SRA1103962,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.92911,,0.1877,,0.72025,,0.58085,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-07-27,Undetermined,Embryo,Whole Organism,All anatomical structures 60499,SRR12328856,SRX8829075,SRS7048441,SRP273655,PRJNA648800,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA,PRJNA648800,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C1,C1 C1 1 4,,replicate:biological replicate 1|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C1C120200711,C1C120200711,RNA seq of zebrafish in different conditions,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP273655,,,C1_C1_1_4_1.fq.gz C1_C1_1_4_2.fq.gz,fastq fastq,6746729200.0,67467292.0,C1 C1 1 4 1.fq.gz,0:100 1:100,A:2004203843;C:1356765594;G:1357760526;T:2027999237;N:0,100,100,,,2004203843,1356765594,1357760526,2027999237,0,SRX8829075,SRS7048441,SRA1103962,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.92733,,0.19903,,0.72228,,0.59259,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-07-27,Undetermined,Embryo,Whole Organism,All anatomical structures 60500,SRR12328857,SRX8829074,SRS7048440,SRP273655,PRJNA648800,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA,PRJNA648800,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C0,C0 C0 2 4,,replicate:biological replicate 2|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C0C020200712,C0C020200712,RNA seq of zebrafish in different conditions,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP273655,,,C0_C0_2_4_1.fq.gz C0_C0_2_4_2.fq.gz,fastq fastq,6924724800.0,69247248.0,C0 C0 2 4 1.fq.gz,0:100 1:100,A:1974618038;C:1471821932;G:1482725702;T:1995559128;N:0,100,100,,,1974618038,1471821932,1482725702,1995559128,0,SRX8829074,SRS7048440,SRA1103962,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.93473,,0.14676,,0.69649,,0.50413,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-07-27,Undetermined,Embryo,Whole Organism,All anatomical structures 60501,SRR12328858,SRX8829073,SRS7048439,SRP273655,PRJNA648800,mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA,PRJNA648800,Other,Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.,,,,C0,C0 C0 1 4,,replicate:biological replicate 1|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,C0C020200711,C0C020200711,RNA seq of zebrafish in different conditions,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP273655,,,C0_C0_1_4_1.fq.gz C0_C0_1_4_2.fq.gz,fastq fastq,6899505600.0,68995056.0,C0 C0 1 4 1.fq.gz,0:100 1:100,A:1957459931;C:1477351919;G:1482435319;T:1982258431;N:0,100,100,,,1957459931,1477351919,1482435319,1982258431,0,SRX8829073,SRS7048439,SRA1103962,Southern University of Science and Technology|School of Environmental Science and Engineering,Southern University of Science and Technology,1,0.93567,,0.14057,,0.6883,,0.48707,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-07-27,Undetermined,Embryo,Whole Organism,All anatomical structures 60550,SRR12342828,SRX8842536,SRS7105601,SRP274071,PRJNA649399,zebrafish 5 dpf sequencing,PRJNA649399,Other,For a more comprehensive analysis for the role of oxr1a on zebrafish for protection against oxidative stress,,,,,WT CTRL,,strain:no|isolate:without|breed:AB line|cultivar:1|ecotype:2|age:5 dpf|dev stage:larval|sex:male|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,whole fish,729729,729729,AB line gene knockout,,,WGS,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP274071,,,WT_ctrl1 WT_ctrl2,fastq fastq,2795932250.0,11183729.0,WT ctrl1.gz,0:125 1:125,A:714170507;C:687382036;G:684930011;T:709446720;N:2976,125,125,,,714170507,687382036,684930011,709446720,2976,SRX8842536,SRS7105601,SRA1105186,Southwest University|College of Animal Science and Technolgoy,Southwest University,2,0.96284,0.9622,0.06398,0.06785,0.70276,0.70179,0.50363,0.50583,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-07-29,Larval,Larval,Whole Organism,All anatomical structures 62699,SRR13320609,SRX9748089,SRS7936232,SRP299308,PRJNA688414,WT and oxr1b mutant zebrafish sequencing,PRJNA688414,Other,To clarify the role of oxr1b in regulating genome wide gene expression during early oxidative stress response the comparative transcriptome analysis of WT and oxr1b / mutant zebrafish larvae were performed by RNA seq.,,,,danio rerio,zebrafish larval,,strain:AB line|isolate:n1|breed:wt type and mutant|cultivar:no|ecotype:Chongqing|age:5 dpf|dev stage:larval stage|sex:not collected|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome Analysis the Early Molecular Response of Oxr1b / Mutant Zebrafish Larvae to Oxidative Stress by RNA Seq,MJ20201107019,MJ20201107019,The total RNA samples were isolated from WT and oxr1b / mutant zebrafish larvae by the RNAiso Plus kit,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP299308,,,WT_H2O2.R1.fastq.gz WT_H2O2.R2.fastq.gz WT_ctrl.R1.fastq.gz WT_ctrl.R2.fastq.gz moxr1b_H2O2.R1.fastq.gz moxr1b_H2O2.R2.fastq.gz moxr1b_ctrl.R1.fastq.gz moxr1b_ctrl.R2.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,30986524572.0,102604386.0,WT H2O2.R1.fastq.gz,0:151 1:151,A:8204027517;C:7238523175;G:7419111448;T:8124456513;N:405919,151,151,,,8204027517,7238523175,7419111448,8124456513,405919,SRX9748089,SRS7936232,SRA1178651,Southwest University|College of Fisheries,Southwest University,2,0.94082,0.91236,0.08994,0.08673,0.65997,0.66478,0.48105,0.48139,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-12-29,Larval,Larval,Whole Organism,All anatomical structures 64161,SRR14308450,SRX10663886,SRS8758306,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,D1,,strain:AB10|age:24hpf10|dev stage:24hpf10|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB10,L10,L10,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,D1.raw_1.fastq.gz D1.raw_2.fastq.gz,fastq fastq,6493890000.0,21646300.0,D1.raw 1.fastq.gz,0:150 1:150,A:1744755708;C:1484305355;G:1549325281;T:1715269253;N:234403,150,150,,,1744755708,1484305355,1549325281,1715269253,234403,SRX10663886,SRS8758306,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94046,0.93893,0.09092,0.08953,0.69179,0.6957,0.47163,0.4711,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64163,SRR14308452,SRX10663884,SRS8758304,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,C2,,strain:AB8|age:24hpf8|dev stage:24hpf8|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB8,L8,L8,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,C2.raw_1.fastq.gz C2.raw_2.fastq.gz,fastq fastq,5887783500.0,19625945.0,C2.raw 1.fastq.gz,0:150 1:150,A:1539979565;C:1392825547;G:1451253488;T:1503541801;N:183099,150,150,,,1539979565,1392825547,1451253488,1503541801,183099,SRX10663884,SRS8758304,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94543,0.94466,0.06666,0.06614,0.73342,0.73468,0.46413,0.46432,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64164,SRR14308453,SRX10663883,SRS8758303,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,C1,,strain:AB7|age:24hpf7|dev stage:24hpf7|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB7,L7,L7,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,C1.raw_1.fastq.gz C1.raw_2.fastq.gz,fastq fastq,5878215900.0,19594053.0,C1.raw 1.fastq.gz,0:150 1:150,A:1567876584;C:1356626287;G:1407943115;T:1545550803;N:219111,150,150,,,1567876584,1356626287,1407943115,1545550803,219111,SRX10663883,SRS8758303,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.93508,0.93337,0.08056,0.08002,0.74024,0.74276,0.47159,0.47142,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64165,SRR14308454,SRX10663882,SRS8758302,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,B3,,strain:AB6|age:24hpf6|dev stage:24hpf6|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB6,L6,L6,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,B3.raw_1.fastq.gz B3.raw_2.fastq.gz,fastq fastq,5684530200.0,18948434.0,B3.raw 1.fastq.gz,0:150 1:150,A:1468959527;C:1362254368;G:1409533547;T:1443570573;N:212185,150,150,,,1468959527,1362254368,1409533547,1443570573,212185,SRX10663882,SRS8758302,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.74739,0.74464,0.07384,0.07335,0.72671,0.72977,0.46742,0.47358,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64166,SRR14308455,SRX10663881,SRS8758301,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,B2,,strain:AB5|age:24hpf5|dev stage:24hpf5|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB5,L5,L5,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,B2.raw_1.fastq.gz B2.raw_2.fastq.gz,fastq fastq,6605542500.0,22018475.0,B2.raw 1.fastq.gz,0:150 1:150,A:1776549620;C:1511937358;G:1570716255;T:1746097273;N:241994,150,150,,,1776549620,1511937358,1570716255,1746097273,241994,SRX10663881,SRS8758301,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94479,0.94309,0.09199,0.09117,0.7024,0.70445,0.46871,0.46925,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64167,SRR14308456,SRX10663880,SRS8758300,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,B1,,strain:AB4|age:24hpf4|dev stage:24hpf4|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB4,L4,L4,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,B1.raw_1.fastq.gz B1.raw_2.fastq.gz,fastq fastq,5853655500.0,19512185.0,B1.raw 1.fastq.gz,0:150 1:150,A:1571488140;C:1342134462;G:1393752149;T:1546065949;N:214800,150,150,,,1571488140,1342134462,1393752149,1546065949,214800,SRX10663880,SRS8758300,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94318,0.94153,0.08642,0.08621,0.7024,0.70508,0.46359,0.46397,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64168,SRR14308457,SRX10663879,SRS8758299,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,DD3,,strain:AB24|age:24hpf21|dev stage:24hpf21|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB24,L24,L24,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,DD3.raw_1.fastq.gz DD3.raw_2.fastq.gz,fastq fastq,7608806100.0,25362687.0,DD3.raw 1.fastq.gz,0:150 1:150,A:2042994601;C:1734375022;G:1812166219;T:2018988826;N:281432,150,150,,,2042994601,1734375022,1812166219,2018988826,281432,SRX10663879,SRS8758299,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94225,0.94109,0.10828,0.10717,0.67436,0.6776,0.47781,0.48362,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64169,SRR14308458,SRX10663878,SRS8758298,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,DD2,,strain:AB23|age:24hpf21|dev stage:24hpf21|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB23,L23,L23,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,DD2.raw_1.fastq.gz DD2.raw_2.fastq.gz,fastq fastq,8917386000.0,29724620.0,DD2.raw 1.fastq.gz,0:150 1:150,A:2348537193;C:2056372655;G:2265284593;T:2246861797;N:329762,150,150,,,2348537193,2056372655,2265284593,2246861797,329762,SRX10663878,SRS8758298,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94502,0.94397,0.09162,0.09061,0.67444,0.67718,0.47862,0.47594,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64170,SRR14308459,SRX10663877,SRS8758297,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,DD1,,strain:AB22|age:24hpf21|dev stage:24hpf21|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB22,L22,L22,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,DD1.raw_1.fastq.gz DD1.raw_2.fastq.gz,fastq fastq,9206423700.0,30688079.0,DD1.raw 1.fastq.gz,0:150 1:150,A:2472225392;C:2105587795;G:2227426250;T:2400846522;N:337741,150,150,,,2472225392,2105587795,2227426250,2400846522,337741,SRX10663877,SRS8758297,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94554,0.94388,0.09791,0.09713,0.67176,0.67608,0.47029,0.46751,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-26,Pharyngula,Embryo,Whole Organism,All anatomical structures 64171,SRR14308460,SRX10663876,SRS8758296,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,CC3,,strain:AB21|age:24hpf21|dev stage:24hpf21|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB21,L21,L21,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,CC3.raw_1.fastq.gz CC3.raw_2.fastq.gz,fastq fastq,7960518600.0,26535062.0,CC3.raw 1.fastq.gz,0:150 1:150,A:2140265475;C:1813420444;G:1929113445;T:2077420579;N:298657,150,150,,,2140265475,1813420444,1929113445,2077420579,298657,SRX10663876,SRS8758296,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94251,0.94195,0.10311,0.10286,0.66703,0.66916,0.47505,0.4745,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64172,SRR14308461,SRX10663875,SRS8758295,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,A3,,strain:AB3|age:24hpf3|dev stage:24hpf3|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB3,L3,L3,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,A3.raw_1.fastq.gz A3.raw_2.fastq.gz,fastq fastq,6501644400.0,21672148.0,A3.raw 1.fastq.gz,0:150 1:150,A:1749736007;C:1484391807;G:1544667394;T:1722602072;N:247120,150,150,,,1749736007,1484391807,1544667394,1722602072,247120,SRX10663875,SRS8758295,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.93166,0.92874,0.09361,0.09274,0.69033,0.69382,0.4671,0.47232,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64173,SRR14308462,SRX10663874,SRS8758294,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,CC2,,strain:AB20|age:24hpf20|dev stage:24hpf20|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB20,L20,L20,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,CC2.raw_1.fastq.gz CC2.raw_2.fastq.gz,fastq fastq,6983705700.0,23279019.0,CC2.raw 1.fastq.gz,0:150 1:150,A:1893999424;C:1578088530;G:1645506692;T:1865862107;N:248947,150,150,,,1893999424,1578088530,1645506692,1865862107,248947,SRX10663874,SRS8758294,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94027,0.93898,0.11339,0.11255,0.66687,0.67044,0.47404,0.47154,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64174,SRR14308463,SRX10663873,SRS8758293,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,CC1,,strain:AB19|age:24hpf19|dev stage:24hpf19|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB19,L19,L19,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,CC1.raw_1.fastq.gz CC1.raw_2.fastq.gz,fastq fastq,6085625100.0,20285417.0,CC1.raw 1.fastq.gz,0:150 1:150,A:1649108440;C:1377973381;G:1437131820;T:1621215684;N:195775,150,150,,,1649108440,1377973381,1437131820,1621215684,195775,SRX10663873,SRS8758293,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.93918,0.93804,0.11318,0.11256,0.66754,0.67006,0.4771,0.47662,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64175,SRR14308464,SRX10663872,SRS8758292,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,BB3,,strain:AB18|age:24hpf18|dev stage:24hpf18|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB18,L18,L18,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,BB3.raw_1.fastq.gz BB3.raw_2.fastq.gz,fastq fastq,7062474600.0,23541582.0,BB3.raw 1.fastq.gz,0:150 1:150,A:1921863301;C:1592284161;G:1655846305;T:1892221736;N:259097,150,150,,,1921863301,1592284161,1655846305,1892221736,259097,SRX10663872,SRS8758292,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.93889,0.93837,0.11056,0.10986,0.66614,0.66933,0.47318,0.47131,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64176,SRR14308465,SRX10663871,SRS8758291,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,BB2,,strain:AB17|age:24hpf17|dev stage:24hpf17|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB17,L17,L17,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,BB2.raw_1.fastq.gz BB2.raw_2.fastq.gz,fastq fastq,8811666300.0,29372221.0,BB2.raw 1.fastq.gz,0:150 1:150,A:2397552932;C:1984902811;G:2068491247;T:2360394673;N:324637,150,150,,,2397552932,1984902811,2068491247,2360394673,324637,SRX10663871,SRS8758291,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94173,0.9408,0.11119,0.11014,0.66862,0.67361,0.47037,0.47102,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64177,SRR14308466,SRX10663870,SRS8758290,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,BB1,,strain:AB16|age:24hpf16|dev stage:24hpf16|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB16,L16,L16,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,BB1.raw_1.fastq.gz BB1.raw_2.fastq.gz,fastq fastq,7443202800.0,24810676.0,BB1.raw 1.fastq.gz,0:150 1:150,A:2006371139;C:1694257851;G:1793398929;T:1948895527;N:279354,150,150,,,2006371139,1694257851,1793398929,1948895527,279354,SRX10663870,SRS8758290,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94595,0.94447,0.09854,0.09761,0.66947,0.67308,0.47022,0.46692,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64178,SRR14308467,SRX10663869,SRS8758289,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,AA3,,strain:AB15|age:24hpf15|dev stage:24hpf15|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB15,L15,L15,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,AA3.raw_2.fastq.gz AA3.raw_1.fastq.gz,fastq fastq,9615009600.0,32050032.0,AA3.raw 1.fastq.gz,0:150 1:150,A:2582591269;C:2196606474;G:2311586967;T:2523869435;N:355455,150,150,,,2582591269,2196606474,2311586967,2523869435,355455,SRX10663869,SRS8758289,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94626,0.94544,0.10279,0.10177,0.6607,0.66409,0.47416,0.46877,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-26,Pharyngula,Embryo,Whole Organism,All anatomical structures 64179,SRR14308468,SRX10663868,SRS8758288,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,AA2,,strain:AB14|age:24hpf14|dev stage:24hpf14|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB14,L14,L14,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,AA2.raw_1.fastq.gz AA2.raw_2.fastq.gz,fastq fastq,9362109300.0,31207031.0,AA2.raw 1.fastq.gz,0:150 1:150,A:2520201597;C:2134760126;G:2243935064;T:2462866543;N:345970,150,150,,,2520201597,2134760126,2243935064,2462866543,345970,SRX10663868,SRS8758288,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94556,0.94456,0.10681,0.10604,0.66235,0.6647,0.4763,0.47399,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-26,Pharyngula,Embryo,Whole Organism,All anatomical structures 64180,SRR14308469,SRX10663867,SRS8758287,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,AA1,,strain:AB13|age:24hpf13|dev stage:24hpf13|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB13,L13,L13,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,AA1.raw_1.fastq.gz AA1.raw_2.fastq.gz,fastq fastq,7908833100.0,26362777.0,AA1.raw 1.fastq.gz,0:150 1:150,A:2160066191;C:1780834262;G:1851117381;T:2116551054;N:264212,150,150,,,2160066191,1780834262,1851117381,2116551054,264212,SRX10663867,SRS8758287,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.9396,0.93706,0.12075,0.11997,0.6619,0.66429,0.46569,0.46809,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64181,SRR14308470,SRX10663866,SRS8758286,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,D3,,strain:AB12|age:24hpf12|dev stage:24hpf12|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB12,L12,L12,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,D3.raw_1.fastq.gz D3.raw_2.fastq.gz,fastq fastq,6923319900.0,23077733.0,D3.raw 1.fastq.gz,0:150 1:150,A:1863150654;C:1581723494;G:1644468748;T:1833723008;N:253996,150,150,,,1863150654,1581723494,1644468748,1833723008,253996,SRX10663866,SRS8758286,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.94206,0.94012,0.09084,0.08963,0.69158,0.69587,0.46957,0.46928,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64182,SRR14308471,SRX10663865,SRS8758285,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,D2,,strain:AB11|age:24hpf11|dev stage:24hpf11|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB11,L11,L11,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,D2.raw_1.fastq.gz D2.raw_2.fastq.gz,fastq fastq,5966531700.0,19888439.0,D2.raw 1.fastq.gz,0:150 1:150,A:1618527031;C:1354948721;G:1407570126;T:1585294636;N:191186,150,150,,,1618527031,1354948721,1407570126,1585294636,191186,SRX10663865,SRS8758285,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.93817,0.93656,0.09919,0.09832,0.69633,0.69873,0.46752,0.46677,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64183,SRR14308472,SRX10663864,SRS8758284,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,A2,,strain:AB2|age:24hpf2|dev stage:24hpf2|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB2,L2,L2,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,A2.raw_1.fastq.gz A2.raw_2.fastq.gz,fastq fastq,6898409700.0,22994699.0,A2.raw 1.fastq.gz,0:150 1:150,A:1853201809;C:1578196914;G:1644192208;T:1822563946;N:254823,150,150,,,1853201809,1578196914,1644192208,1822563946,254823,SRX10663864,SRS8758284,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.92689,0.92559,0.09274,0.092,0.69449,0.698,0.47398,0.47458,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures 64184,SRR14308473,SRX10663863,SRS8758283,SRP315996,PRJNA724011,BDE 47 zebrafish 24hpf 4dpf,PRJNA724011,Other,,,,,,A1,,strain:AB1|age:24hpf1|dev stage:24hpf1|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal,,,,,,,,,AB1,L1,L1,paried end seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP315996,,,A1.raw_1.fastq.gz A1.raw_2.fastq.gz,fastq fastq,6969096000.0,23230320.0,A1.raw 1.fastq.gz,0:150 1:150,A:1873420822;C:1595222195;G:1663575945;T:1836625430;N:251608,150,150,,,1873420822,1595222195,1663575945,1836625430,251608,SRX10663863,SRS8758283,SRA1222808,Shantou University|Medical Colleg,Shantou University,2,0.92862,0.92691,0.09367,0.09313,0.69203,0.69603,0.47678,0.47455,150,150,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-04-27,Pharyngula,Embryo,Whole Organism,All anatomical structures