rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 32,DRR408242,DRX393848,DRS407006,DRP012035,PRJDB14274,Zebrafish Gut RNA seq.,DRP012035,Transcriptome Analysis,A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.,,,zebrafish wild type AB adult gut replicate 3,zebrafish adult gut replicate 3,SAMD00529462,,sample name:zebrafish adult gut replicate 3|biological replicate:adult 3|strain:AB,,,,,,,,,Illumina HiSeq 1500 sequencing of SAMD00529462,DRX393848,AR019 gut 6 adult,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 1500,1260Application ReadForward1,DRP012035,Illumina HiSeq 1500 sequencing of SAMD00529462,,,,3546347364.0,28145614.0,DRR408242,0:126 1:0,A:919466631;C:829424335;G:818581155;T:978810217;N:65026,126,0,,,919466631,829424335,818581155,978810217,65026,DRX393848,DRS407006,DRA014885,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Japan,2024-09-20,Adult,Adult,Gut,Digestive System 33,DRR408241,DRX393847,DRS407005,DRP012035,PRJDB14274,Zebrafish Gut RNA seq.,DRP012035,Transcriptome Analysis,A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.,,,zebrafish wild type AB adult gut replicate 2,zebrafish adult gut replicate 2,SAMD00529461,,sample name:zebrafish adult gut replicate 2|biological replicate:adult 2|strain:AB,,,,,,,,,Illumina HiSeq 1500 sequencing of SAMD00529461,DRX393847,AR006 gut 4 adult,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 1500,1260Application ReadForward1,DRP012035,Illumina HiSeq 1500 sequencing of SAMD00529461,,,,3671973648.0,29142648.0,DRR408241,0:126 1:0,A:942167543;C:859431290;G:852661772;T:1017643011;N:70032,126,0,,,942167543,859431290,852661772,1017643011,70032,DRX393847,DRS407005,DRA014885,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Japan,2024-09-20,Adult,Adult,Gut,Digestive System 34,DRR408240,DRX393846,DRS407004,DRP012035,PRJDB14274,Zebrafish Gut RNA seq.,DRP012035,Transcriptome Analysis,A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.,,,zebrafish wild type AB adult gut replicate 1,zebrafish adult gut replicate 1,SAMD00529460,,sample name:zebrafish adult gut replicate 1|biological replicate:adult 1|strain:AB,,,,,,,,,Illumina HiSeq 1500 sequencing of SAMD00529460,DRX393846,AR004 gut 2 adult,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 1500,1260Application ReadForward1,DRP012035,Illumina HiSeq 1500 sequencing of SAMD00529460,,,,3480523704.0,27623204.0,DRR408240,0:126 1:0,A:898051986;C:827557593;G:816541244;T:938307607;N:65274,126,0,,,898051986,827557593,816541244,938307607,65274,DRX393846,DRS407004,DRA014885,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Japan,2024-09-20,Adult,Adult,Gut,Digestive System 35,DRR408239,DRX393845,DRS407003,DRP012035,PRJDB14274,Zebrafish Gut RNA seq.,DRP012035,Transcriptome Analysis,A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.,,,zebrafish wild type AB larval gut replicate 3,zebrafish larval gut replicate 3,SAMD00529459,,sample name:zebrafish larval gut replicate 3|biological replicate:larval 3|strain:AB,,,,,,,,,Illumina HiSeq 1500 sequencing of SAMD00529459,DRX393845,AR012 gut 5 5 dpf 6 dpf larvae,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 1500,1260Application ReadForward1,DRP012035,Illumina HiSeq 1500 sequencing of SAMD00529459,,,,3463982046.0,27491921.0,DRR408239,0:126 1:0,A:842552557;C:849757648;G:837664725;T:933942026;N:65090,126,0,,,842552557,849757648,837664725,933942026,65090,DRX393845,DRS407003,DRA014885,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Japan,2024-09-20,Larval,Larval,Gut,Digestive System 36,DRR408238,DRX393844,DRS407002,DRP012035,PRJDB14274,Zebrafish Gut RNA seq.,DRP012035,Transcriptome Analysis,A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.,,,zebrafish wild type AB larval gut replicate 2,zebrafish larval gut replicate 2,SAMD00529458,,sample name:zebrafish larval gut replicate 2|biological replicate:larval 2|strain:AB,,,,,,,,,Illumina HiSeq 1500 sequencing of SAMD00529458,DRX393844,AR005 gut 3 5 dpf 6 dpf larvae,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 1500,1260Application ReadForward1,DRP012035,Illumina HiSeq 1500 sequencing of SAMD00529458,,,,3782320416.0,30018416.0,DRR408238,0:126 1:0,A:930337206;C:920645770;G:906559955;T:1024704277;N:73208,126,0,,,930337206,920645770,906559955,1024704277,73208,DRX393844,DRS407002,DRA014885,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Japan,2024-09-20,Larval,Larval,Gut,Digestive System 37,DRR408237,DRX393843,DRS407001,DRP012035,PRJDB14274,Zebrafish Gut RNA seq.,DRP012035,Transcriptome Analysis,A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.,,,zebrafish wild type AB larval gut replicate 1,zebrafish larval gut replicate 1,SAMD00529457,,sample name:zebrafish larval gut replicate 1|biological replicate:larval 1|strain:AB,,,,,,,,,Illumina HiSeq 1500 sequencing of SAMD00529457,DRX393843,AR002 gut 1 5 dpf 6 dpf larvae,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 1500,1260Application ReadForward1,DRP012035,Illumina HiSeq 1500 sequencing of SAMD00529457,,,,3606885828.0,28626078.0,DRR408237,0:126 1:0,A:879148446;C:885673723;G:870330963;T:971663212;N:69484,126,0,,,879148446,885673723,870330963,971663212,69484,DRX393843,DRS407001,DRA014885,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Japan,2024-09-20,Larval,Larval,Gut,Digestive System 61693,SRR12964273,SRX9416878,SRS7632325,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,LG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:low w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,1 8 R1,1 8 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F1-8-CH_1.fastq.gz F1-8-CH_2.fastq.gz,fastq fastq,7325280894.0,24255897.0,F1 8 CH 1.fastq.gz,0:151 1:151,A:1918036349;C:1737589923;G:1816977467;T:1852649336;N:27819,151,151,,,1918036349,1737589923,1816977467,1852649336,27819,SRX9416878,SRS7632325,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.95509,0.95658,0.04684,0.04664,0.82221,0.82059,0.60005,0.56895,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61694,SRR12964274,SRX9416877,SRS7632325,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,LG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:low w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,13 1 R1,13 1 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F13-1-CH_1.fastq.gz F13-1-CH_2.fastq.gz,fastq fastq,7204681422.0,23856561.0,F13 1 CH 1.fastq.gz,0:151 1:151,A:1865960439;C:1728161422;G:1822471558;T:1788060072;N:27931,151,151,,,1865960439,1728161422,1822471558,1788060072,27931,SRX9416877,SRS7632325,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.95713,0.95761,0.04562,0.04518,0.77339,0.7725,0.54579,0.55214,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61695,SRR12964275,SRX9416876,SRS7632325,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,LG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:low w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,13 6 R1,13 6 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F13-6-CH_1.fastq.gz F13-6-CH_2.fastq.gz,fastq fastq,6717305366.0,22242733.0,F13 6 CH 1.fastq.gz,0:151 1:151,A:1751406615;C:1600949148;G:1664039061;T:1700884996;N:25546,151,151,,,1751406615,1600949148,1664039061,1700884996,25546,SRX9416876,SRS7632325,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.95426,0.95523,0.05393,0.0534,0.76165,0.76045,0.53973,0.54233,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61696,SRR12964276,SRX9416875,SRS7632325,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,LG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:low w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,20 4 R1,20 4 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F20-4-CH_1.fastq.gz F20-4-CH_2.fastq.gz,fastq fastq,8278093914.0,27410907.0,F20 4 CH 1.fastq.gz,0:151 1:151,A:2152723831;C:1979642795;G:2075202406;T:2070493116;N:31766,151,151,,,2152723831,1979642795,2075202406,2070493116,31766,SRX9416875,SRS7632325,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.95671,0.9578,0.04994,0.04962,0.76282,0.76311,0.54822,0.55628,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61697,SRR12964277,SRX9416874,SRS7632325,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,LG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:low w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,22 3 R1,22 3 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F22-3-CH_1.fastq.gz F22-3-CH_2.fastq.gz,fastq fastq,6744916924.0,22334162.0,F22 3 CH 1.fastq.gz,0:151 1:151,A:1735435964;C:1625676259;G:1701661616;T:1682117454;N:25631,151,151,,,1735435964,1625676259,1701661616,1682117454,25631,SRX9416874,SRS7632325,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.96162,0.96291,0.04811,0.04761,0.76731,0.76597,0.54763,0.55415,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61698,SRR12964278,SRX9416873,SRS7632325,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,LG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:low w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,22 5 R1,22 5 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F22-5-CH_1.fastq.gz F22-5-CH_2.fastq.gz,fastq fastq,9233983710.0,30576105.0,F22 5 CH 1.fastq.gz,0:151 1:151,A:2414399726;C:2199826316;G:2268243787;T:2351478779;N:35102,151,151,,,2414399726,2199826316,2268243787,2351478779,35102,SRX9416873,SRS7632325,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.95807,0.95965,0.05505,0.05432,0.74878,0.74775,0.54766,0.53823,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61699,SRR12964279,SRX9416872,SRS7632324,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,HG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:high w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,3 7 R1,3 7 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F3-7-GR_1.fastq.gz F3-7-GR_2.fastq.gz,fastq fastq,6885663118.0,22800209.0,F3 7 GR 1.fastq.gz,0:151 1:151,A:1812477779;C:1623127887;G:1690116325;T:1759914694;N:26433,151,151,,,1812477779,1623127887,1690116325,1759914694,26433,SRX9416872,SRS7632324,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.94927,0.95113,0.05683,0.05648,0.75191,0.7512,0.54881,0.52947,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61700,SRR12964280,SRX9416871,SRS7632324,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,HG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:high w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,12 8 R1,12 8 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F12-8-GR_1.fastq.gz F12-8-GR_2.fastq.gz,fastq fastq,7444642166.0,24651133.0,F12 8 GR 1.fastq.gz,0:151 1:151,A:1929248444;C:1789983189;G:1819316431;T:1906065632;N:28470,151,151,,,1929248444,1789983189,1819316431,1906065632,28470,SRX9416871,SRS7632324,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.96276,0.96524,0.05604,0.05528,0.75684,0.75564,0.52829,0.54166,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61701,SRR12964281,SRX9416870,SRS7632324,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,HG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:high w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,3 9 R1,3 9 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F3-9-GR_1.fastq.gz F3-9-GR_2.fastq.gz,fastq fastq,8809498550.0,29170525.0,F3 9 GR 1.fastq.gz,0:151 1:151,A:2306194345;C:2098546233;G:2173624200;T:2231100146;N:33626,151,151,,,2306194345,2098546233,2173624200,2231100146,33626,SRX9416870,SRS7632324,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.95932,0.96111,0.05271,0.05227,0.7514,0.75097,0.55339,0.55085,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61702,SRR12964282,SRX9416869,SRS7632324,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,HG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:high w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,21 7 R1,21 7 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F21-7-GR_1.fastq.gz F21-7-GR_2.fastq.gz,fastq fastq,9035029734.0,29917317.0,F21 7 GR 1.fastq.gz,0:151 1:151,A:2358940333;C:2147949025;G:2221572455;T:2306533838;N:34083,151,151,,,2358940333,2147949025,2221572455,2306533838,34083,SRX9416869,SRS7632324,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.94873,0.95017,0.05513,0.05454,0.75073,0.75061,0.54564,0.55234,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 61703,SRR12964283,SRX9416868,SRS7632324,SRP290781,PRJNA673693,Global studies of soybean meal dietary in fish,PRJNA673693,Other,Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish,,,,,HG,,strain:family generated from TAB 5 DB 3 or AB|isolate:null|breed:zebrafish|age:98 dpf stage:adult|sex:male|tissue:intestine|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile|genotype:high w8 post a soy diet|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish adult soy diet,21 1 R1,21 1 R1,"RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively ""tagmentation"" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology",,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP290781,,,F21-1-GR_1.fastq.gz F21-1-GR_2.fastq.gz,fastq fastq,8985193090.0,29752295.0,F21 1 GR 1.fastq.gz,0:151 1:151,A:2309244915;C:2172345682;G:2225381374;T:2278186696;N:34423,151,151,,,2309244915,2172345682,2225381374,2278186696,34423,SRX9416868,SRS7632324,SRA1152184,Universidad de las Americas|Facultad de Medicina Veterinaria y Agronomia,Universidad de las Americas,2,0.95801,0.96086,0.05089,0.05045,0.75643,0.7554,0.54732,0.51671,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Unknown,2020-11-02,Adult,Adult,Gut,Digestive System 71597,SRR21780858,SRX17775679,SRS15301946,SRP400655,PRJNA885906,Cell Type Specific Responses to the Microbiota Across All Tissues of the Larval Zebrafish,PRJNA885906,Other,The transcriptional responses of the host zebrafish to the presence of the microbiota was assessed across all cell types throughout the larval body at single cell resolution. The goal of this work is to generate a resource for generating new hypotheses about the intricate interactions between animal hosts and their microbiota.,,,,BefA diss,BefA 1532,,strain:Tgins; eGFP|dev stage:6dpf|sex:not applicable|tissue:dissected digestive systems|BioSampleModel:Model organism or animal,,,,,,,,,germ free 6dpf dissected digestive systems treated with protein,1532,1532,the cells are from dissected guts from germ free larvae but were treated with exogenous protein,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP400655,,,BefAdiss_S2_L008_R1_001.fastq.gz BefAdiss_S2_L008_R2_001.fastq.gz,fastq fastq,62618506720.0,355786970.0,BefAdiss S2 L008 R1 001.fastq.gz,0:26 1:150,A:18434729847;C:13374700052;G:13922149278;T:16789619859;N:97307684,26,150,,,18434729847,13374700052,13922149278,16789619859,97307684,SRX17775679,SRS15301946,SRA1511285,University of Oregon|Institute of Molecular Biology,University of Oregon,2,0.00182,0.89692,0.00064,0.07716,0.9962,0.82798,0.42608,0.6075,26,150,T,B,sc-like readlen,illumina,hiseq_era,unknown,random_priming,unknown,sc,unknown,unknown,,United States,2022-10-02,Larval,Larval,Gut,Digestive System 71598,SRR21780859,SRX17775678,SRS15301945,SRP400655,PRJNA885906,Cell Type Specific Responses to the Microbiota Across All Tissues of the Larval Zebrafish,PRJNA885906,Other,The transcriptional responses of the host zebrafish to the presence of the microbiota was assessed across all cell types throughout the larval body at single cell resolution. The goal of this work is to generate a resource for generating new hypotheses about the intricate interactions between animal hosts and their microbiota.,,,,GF diss2,GF 1531,,strain:Tgins; eGFP|dev stage:6dpf|sex:not applicable|tissue:dissected digestive systems|BioSampleModel:Model organism or animal,,,,,,,,,germ free 6dpf dissected digestive systems lane 2,1531,1531,the cells dissected guts from germ free larvae were split across two lanes library 1530/1531 come from same sample,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP400655,,,GFdiss2_S1_L004_R1_001.fastq.gz GFdiss2_S1_L004_R2_001.fastq.gz,fastq fastq,66862372720.0,379899845.0,GFdiss2 S1 L004 R1 001.fastq.gz,0:26 1:150,A:10814720171;C:8609009803;G:8785194946;T:9942289999;N:28711157801,26,150,,,10814720171,8609009803,8785194946,9942289999,28711157801,SRX17775678,SRS15301945,SRA1511285,University of Oregon|Institute of Molecular Biology,University of Oregon,2,0.00191,0.92014,0.00074,0.08575,0.99616,0.87793,0.35964,0.58459,26,150,T,B,sc-like readlen,illumina,hiseq_era,unknown,random_priming,unknown,sc,unknown,unknown,,United States,2022-10-02,Larval,Larval,Gut,Digestive System 71599,SRR21780860,SRX17775677,SRS15301944,SRP400655,PRJNA885906,Cell Type Specific Responses to the Microbiota Across All Tissues of the Larval Zebrafish,PRJNA885906,Other,The transcriptional responses of the host zebrafish to the presence of the microbiota was assessed across all cell types throughout the larval body at single cell resolution. The goal of this work is to generate a resource for generating new hypotheses about the intricate interactions between animal hosts and their microbiota.,,,,GF diss1,GF 1530,,strain:Tgins; eGFP|dev stage:6dpf|sex:not applicable|tissue:dissected digestive systems|BioSampleModel:Model organism or animal,,,,,,,,,germ free 6dpf dissected digestive systems lane 1,1530,1530,the cells dissected guts from germ free larvae were split across two lanes library 1530/1531 come from same sample,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP400655,,,GFdiss1_S1_L007_R1_001.fastq.gz GFdiss1_S1_L007_R2_001.fastq.gz,fastq fastq,63769716736.0,362327936.0,GFdiss1 S1 L007 R1 001.fastq.gz,0:26 1:150,A:18291156920;C:14095548431;G:14421791117;T:16786925671;N:174294597,26,150,,,18291156920,14095548431,14421791117,16786925671,174294597,SRX17775677,SRS15301944,SRA1511285,University of Oregon|Institute of Molecular Biology,University of Oregon,2,0.00172,0.91725,0.00064,0.08763,0.99648,0.82804,0.39234,0.5982,26,150,T,B,sc-like readlen,illumina,hiseq_era,unknown,random_priming,unknown,sc,unknown,unknown,,United States,2022-10-02,Larval,Larval,Gut,Digestive System