rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
37107,SRR891495,SRX298188,SRS673878,SRP024369,PRJNA207719,Tissue specific transcriptome profiling of zebrafish,PRJNA207719,Other,Tissue specific transcriptome profiling of zebrafish.,,,,,Danio rerio heart,,sex:missing|strain:wild type|tissue:heart|health state:normal|collection date:2013|geo loc name:India|biomaterial provider:CSIR Institute of Genomics and Integrative Biology|age:adult|BioSampleModel:Model organism or animal,,,,,,,,,Tissue specific transcriptome of Danio rerio,Transcriptome of zebrafish Danio rerio heart,Zebrafish heart,mRNA sequencing via poly A enrichment using poly A beads Illumina mRNA seq protocol,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>102</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>52</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP024369,,,lane1_NoIndex_L001_R1_cat.fastq lane1_NoIndex_L001_R2_cat.fastq,fastq fastq,2757807456.0,27037328.0,Transcriptome of zebrafish Danio rerio heart,0:51 1:51,A:685519386;C:693864326;G:733553235;T:643916122;N:954387,51,51,,,685519386,693864326,733553235,643916122,954387,SRX298188,SRS673878,SRA089174,CSIR-IGIB,CSIR-Institute of Genomics and Integrative Biology CSIR-Institute of Genomics and Integrative Biology,2,0.789,0.79038,0.05666,0.05598,0.76982,0.77441,0.45627,0.46617,51,51,B,B,biological fallback assumption,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2013-10-10,Adult,Adult,Heart,Cardiovascular System
39857,SRR2293665,SRX1158743,SRS1039790,SRP062585,PRJNA293269,Danio rerio bigheart mutant transcriptome,PRJNA293269,Whole Genome Sequencing,Zebrafish cardiac transcriptome of big heart mutant. The Bigheart mutant is generated by random mutagenesis in zebrafish ASWT strain by using gene breaking trap GBT PX vector,,,,Bigheart mutant cardiac transcriptome from Danio rerio,Bigheart,,breed:ASWT|age:Adult|sex:pooled male and female|tissue:Heart|biomaterial provider:CSIR IGIB|disease:Cardiac hypertrophy|geo loc name:India|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish Bigheart homozygous cardiac mutant,Bigheart homozygous cardiac mutant,Bigheart homozygous,Truseq RNA seq with ribozero gold,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP062585,,,ZF_24F_homo_ATGTCA_R1_cat.fastq.gz ZF_24F_homo_ATGTCA_R2_cat.fastq.gz,fastq fastq,3375458178.0,16710189.0,Zebrafish bigheart homozygous mutant cardiac transcriptome,0:101 1:101,A:914068294;C:764700320;G:768182746;T:927976744;N:530074,101,101,,,914068294,764700320,768182746,927976744,530074,SRX1158743,SRS1039790,SRA290009,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,2,0.90592,0.90808,0.24934,0.24544,0.73206,0.73316,0.50089,0.50209,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,ribozero,bulk,unknown,unknown,,India,2016-08-19,Adult,Adult,Heart,Cardiovascular System
39858,SRR2293664,SRX1158742,SRS1039790,SRP062585,PRJNA293269,Danio rerio bigheart mutant transcriptome,PRJNA293269,Whole Genome Sequencing,Zebrafish cardiac transcriptome of big heart mutant. The Bigheart mutant is generated by random mutagenesis in zebrafish ASWT strain by using gene breaking trap GBT PX vector,,,,Bigheart mutant cardiac transcriptome from Danio rerio,Bigheart,,breed:ASWT|age:Adult|sex:pooled male and female|tissue:Heart|biomaterial provider:CSIR IGIB|disease:Cardiac hypertrophy|geo loc name:India|BioSampleModel:Model organism or animal,,,,,,,,,ZEBRAFISH Bigheart hetrozygous cardiac transcriptome,Bigheart hetrozygous cardiac transcriptome,Bigheart heterozygous,Truseq RNA seq with robozero gold,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP062585,,,ZF_24F_hetero_CCGTCC_R2_cat.fastq.gz ZF_24F_hetero_CCGTCC_R1_cat.fastq.gz,fastq fastq,17775105746.0,87995573.0,Transcriptome of zebrafish Bigheart heterozygous mutant cardiac transcriptome,0:101 1:101,A:4910552704;C:3934124661;G:3958965970;T:4968643725;N:2818686,101,101,,,4910552704,3934124661,3958965970,4968643725,2818686,SRX1158742,SRS1039790,SRA290009,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,2,0.89569,0.89916,0.30152,0.30176,0.73598,0.73641,0.4892,0.49332,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,India,2016-08-19,Adult,Adult,Heart,Cardiovascular System