rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 10391,ERR8516975,ERX8083451,ERS10521298,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling neurite,SAMEA12922152,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922152|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Sibling neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling neurite p,Sibling neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X4_190227_A00421_38_AH7523DRXX_S56_R1_001.fastq.gz 15812X4_190227_A00421_38_AH7523DRXX_S56_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X4 190227 A00421 38 AH7523DRXX S56 R,0:51 1:51,A:1077092958;C:949537387;G:955020348;T:1099432979;N:20556852,51,51,,,1077092958,949537387,955020348,1099432979,20556852,ERX8083451,ERS10521298,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.9053,0.9259,0.21658,0.22155,0.69369,0.69179,0.50726,0.50871,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10392,ERR8516976,ERX8083451,ERS10521298,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling neurite,SAMEA12922152,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922152|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Sibling neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling neurite p,Sibling neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X5_190227_A00421_38_AH7523DRXX_S55_R1_001.fastq.gz 15812X5_190227_A00421_38_AH7523DRXX_S55_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X5 190227 A00421 38 AH7523DRXX S55 R,0:51 1:51,A:972081222;C:890179393;G:888655698;T:998443264;N:18934747,51,51,,,972081222,890179393,888655698,998443264,18934747,ERX8083451,ERS10521298,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.86107,0.87807,0.22063,0.23029,0.70859,0.70561,0.51656,0.51946,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10393,ERR8516977,ERX8083451,ERS10521298,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling neurite,SAMEA12922152,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922152|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Sibling neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling neurite p,Sibling neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X6_190227_A00421_38_AH7523DRXX_S54_R1_001.fastq.gz 15812X6_190227_A00421_38_AH7523DRXX_S54_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X6 190227 A00421 38 AH7523DRXX S54 R,0:51 1:51,A:728798881;C:962223604;G:958876331;T:735449513;N:17094231,51,51,,,728798881,962223604,958876331,735449513,17094231,ERX8083451,ERS10521298,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.54616,0.55881,0.13313,0.14036,0.84295,0.84185,0.64193,0.59762,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10394,ERR8516972,ERX8083450,ERS10521297,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling cellular,SAMEA12922151,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922151|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Sibling cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling cellular p,Sibling cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X1_190227_A00421_38_AH7523DRXX_S59_R1_001.fastq.gz 15812X1_190227_A00421_38_AH7523DRXX_S59_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X1 190227 A00421 38 AH7523DRXX S59 R,0:51 1:51,A:837274632;C:1062368015;G:1049892288;T:853310517;N:19213786,51,51,,,837274632,1062368015,1049892288,853310517,19213786,ERX8083450,ERS10521297,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.5726,0.57788,0.13781,0.14082,0.80616,0.80452,0.61581,0.60389,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10395,ERR8516973,ERX8083450,ERS10521297,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling cellular,SAMEA12922151,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922151|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Sibling cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling cellular p,Sibling cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X2_190227_A00421_38_AH7523DRXX_S58_R1_001.fastq.gz 15812X2_190227_A00421_38_AH7523DRXX_S58_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X2 190227 A00421 38 AH7523DRXX S58 R,0:51 1:51,A:897813231;C:796012893;G:794839496;T:923696030;N:17221274,51,51,,,897813231,796012893,794839496,923696030,17221274,ERX8083450,ERS10521297,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.92095,0.94156,0.18892,0.20024,0.6901,0.68905,0.49377,0.50086,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10396,ERR8516974,ERX8083450,ERS10521297,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling cellular,SAMEA12922151,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922151|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Sibling cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling cellular p,Sibling cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X3_190227_A00421_38_AH7523DRXX_S57_R1_001.fastq.gz 15812X3_190227_A00421_38_AH7523DRXX_S57_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X3 190227 A00421 38 AH7523DRXX S57 R,0:51 1:51,A:951912827;C:1107150666;G:1086060798;T:973791571;N:20785248,51,51,,,951912827,1107150666,1086060798,973791571,20785248,ERX8083450,ERS10521297,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.63792,0.62667,0.18547,0.18671,0.78756,0.78549,0.59274,0.55478,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10397,ERR8516969,ERX8083449,ERS10521296,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null neurite,SAMEA12922150,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922150|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Null neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null neurite p,Null neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X10_190227_A00421_38_AH7523DRXX_S48_R1_001.fastq.gz 15812X10_190227_A00421_38_AH7523DRXX_S48_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X10 190227 A00421 38 AH7523DRXX S48 R,0:51 1:51,A:925784769;C:934445856;G:959155668;T:924080408;N:18878983,51,51,,,925784769,934445856,959155668,924080408,18878983,ERX8083449,ERS10521296,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.59503,0.61112,0.1947,0.20225,0.76512,0.76337,0.54584,0.54345,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10398,ERR8516970,ERX8083449,ERS10521296,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null neurite,SAMEA12922150,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922150|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Null neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null neurite p,Null neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X11_190227_A00421_38_AH7523DRXX_S52_R1_001.fastq.gz 15812X11_190227_A00421_38_AH7523DRXX_S52_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X11 190227 A00421 38 AH7523DRXX S52 R,0:51 1:51,A:991755033;C:864808531;G:892202564;T:992188806;N:18881958,51,51,,,991755033,864808531,892202564,992188806,18881958,ERX8083449,ERS10521296,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.86612,0.88689,0.26181,0.2728,0.7094,0.7091,0.53639,0.53906,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10399,ERR8516971,ERX8083449,ERS10521296,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null neurite,SAMEA12922150,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922150|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Null neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null neurite p,Null neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X12_190227_A00421_38_AH7523DRXX_S50_R1_001.fastq.gz 15812X12_190227_A00421_38_AH7523DRXX_S50_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X12 190227 A00421 38 AH7523DRXX S50 R,0:51 1:51,A:766707527;C:798667604;G:818782599;T:773280942;N:15938306,51,51,,,766707527,798667604,818782599,773280942,15938306,ERX8083449,ERS10521296,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.88811,0.92834,0.21869,0.22669,0.72878,0.72604,0.55598,0.57831,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10400,ERR8516966,ERX8083448,ERS10521295,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null cellular,SAMEA12922149,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922149|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Null cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null cellular p,Null cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X7_190227_A00421_38_AH7523DRXX_S53_R1_001.fastq.gz 15812X7_190227_A00421_38_AH7523DRXX_S53_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X7 190227 A00421 38 AH7523DRXX S53 R,0:51 1:51,A:774360373;C:720215184;G:719479745;T:796239200;N:15182374,51,51,,,774360373,720215184,719479745,796239200,15182374,ERX8083448,ERS10521295,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.79643,0.81194,0.25554,0.2603,0.72236,0.72021,0.51775,0.51678,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10401,ERR8516967,ERX8083448,ERS10521295,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null cellular,SAMEA12922149,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922149|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Null cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null cellular p,Null cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X8_190227_A00421_38_AH7523DRXX_S51_R1_001.fastq.gz 15812X8_190227_A00421_38_AH7523DRXX_S51_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X8 190227 A00421 38 AH7523DRXX S51 R,0:51 1:51,A:739921027;C:667375549;G:663864111;T:764302396;N:14288091,51,51,,,739921027,667375549,663864111,764302396,14288091,ERX8083448,ERS10521295,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.90817,0.92909,0.23387,0.24814,0.70088,0.69842,0.51238,0.51267,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10402,ERR8516968,ERX8083448,ERS10521295,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null cellular,SAMEA12922149,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922149|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Null cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null cellular p,Null cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X9_190227_A00421_38_AH7523DRXX_S49_R1_001.fastq.gz 15812X9_190227_A00421_38_AH7523DRXX_S49_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X9 190227 A00421 38 AH7523DRXX S49 R,0:51 1:51,A:882831441;C:935213418;G:957033335;T:879085993;N:18444957,51,51,,,882831441,935213418,957033335,879085993,18444957,ERX8083448,ERS10521295,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.76218,0.7682,0.18357,0.18521,0.74444,0.74272,0.46714,0.55518,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 39756,SRR2125736,SRX1117105,SRS1010315,SRP061528,PRJNA290839,Danio rerio Transcriptome or Gene expression,PRJNA290839,Transcriptome Analysis,RNA Seq of Danio rerio transcriptome,,,,,Polr1c2,,breed:not applicable|strain:not applicable|age:5 dpf provider:not applicable|sex:not collected|tissue:whole fish Polr1c2|treatment:KO|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Polr1c2,RNA Seq of Polr1c2,1,Total RNA was extracted from the cells using the mirVanaTM isolation kit Applied Biosystems and treated with DNase Ambion to remove contaminating genomic DNA. Agilent 2100 Bioanalyzer system was used to assess RNA quality of samples and the samples with a RNA Integrity Number RIN greater than 9 were used for transcriptome library construction. cDNA library wasconstructed using TruSeq Stranded Total RNA LT Sample Prep Kit Illumina each prepared from 300ng of total RNA. The cDNA libraries were constructed according to manufacturer’s instruction and index codes were ligated as identification to individual samples as previous described. Briefly mRNA was purified from the total RNA using poly T oligo attached magnetic beads Illumina San Diego USA to remove the ribosomal RNA. Then the Mrna was fragmented by using divalent cations in Illumina proprietary fragmentation buffer at 94 ?C for 1 min. First strand cDNAs were synthesized using random oligonucleotides and SuperScript II then and second cDNAs were synthesized using DNA polymerase I and RNase H. Overhangs were blunted by using exonuclease/polymerase followed by 3’ end adenylation. post adenylation of 3’ ends of DNA fragments Illumina PE adapter oligonucleotides were ligated to DNA fragments. DNA fragments that ligated with adaptor molecules on both ends were selectively enriched using Illumina PCR Primer Cocktail in a 15 cycles PCR reaction. Libraries were purified using AMPure XP system and quantified using the KAPA Library Quantification Kits. Before submitted to sequencing the libraries were normalized and pooled together in a single lane on an Illumina MiSeq platform and 150 bp paired end reads were generated.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina MiSeq,3020Application ReadForward11Application ReadReverse152,SRP061528,,,Polr1c2_S2_L001_R1_001.fastq.gz Polr1c2_S2_L001_R2_001.fastq.gz,bam fastq,1024040592.0,3467167.0,RNA Seq of Polr1c2,0:147.69 1:147.67,A:280222262;C:231619577;G:229733851;T:282415559;N:49343,147,147,,,280222262,231619577,229733851,282415559,49343,SRX1117105,SRS1010315,SRA279862,The Chinese University of Hong Kong,The Chinese University of Hong Kong,2,0.94843,0.95151,0.09589,0.09554,0.68747,0.68694,0.48798,0.48429,150,151,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,trueseq,bulk,bulk,bulk,,China,2016-07-24,Larval,Larval,Whole Organism,All anatomical structures 39757,SRR2125735,SRX1117104,SRS1010314,SRP061528,PRJNA290839,Danio rerio Transcriptome or Gene expression,PRJNA290839,Transcriptome Analysis,RNA Seq of Danio rerio transcriptome,,,,,polr1cKO,,breed:not applicable|strain:not applicable|age:5 dpf provider:not applicable|sex:not collected|tissue:whole fish of polr1cKO|treatment:KO|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of polr1cKO,RNA Seq of polr1cKO,1,Total RNA was extracted from the cells using the mirVanaTM isolation kit Applied Biosystems and treated with DNase Ambion to remove contaminating genomic DNA. Agilent 2100 Bioanalyzer system was used to assess RNA quality of samples and the samples with a RNA Integrity Number RIN greater than 9 were used for transcriptome library construction. cDNA library wasconstructed using TruSeq Stranded Total RNA LT Sample Prep Kit Illumina each prepared from 300ng of total RNA. The cDNA libraries were constructed according to manufacturer’s instruction and index codes were ligated as identification to individual samples as previous described. Briefly mRNA was purified from the total RNA using poly T oligo attached magnetic beads Illumina San Diego USA to remove the ribosomal RNA. Then the Mrna was fragmented by using divalent cations in Illumina proprietary fragmentation buffer at 94 ?C for 1 min. First strand cDNAs were synthesized using random oligonucleotides and SuperScript II then and second cDNAs were synthesized using DNA polymerase I and RNase H. Overhangs were blunted by using exonuclease/polymerase followed by 3’ end adenylation. post adenylation of 3’ ends of DNA fragments Illumina PE adapter oligonucleotides were ligated to DNA fragments. DNA fragments that ligated with adaptor molecules on both ends were selectively enriched using Illumina PCR Primer Cocktail in a 15 cycles PCR reaction. Libraries were purified using AMPure XP system and quantified using the KAPA Library Quantification Kits. Before submitted to sequencing the libraries were normalized and pooled together in a single lane on an Illumina MiSeq platform and 150 bp paired end reads were generated.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina MiSeq,3020Application ReadForward11Application ReadReverse152,SRP061528,,,polr1cKO_S2_L001_R2_001.fastq.gz polr1cKO_S2_L001_R1_001.fastq.gz,fastq fastq,2153644339.0,7160972.0,RNA Seq of polr1cKO,0:150.40 1:150.34,A:558724957;C:517375772;G:514543839;T:562990605;N:9166,150,150,,,558724957,517375772,514543839,562990605,9166,SRX1117104,SRS1010314,SRA279862,The Chinese University of Hong Kong,The Chinese University of Hong Kong,2,0.95998,0.9611,0.07455,0.0729,0.65354,0.65496,0.45853,0.46158,151,151,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,trueseq,bulk,bulk,bulk,,China,2015-07-24,Larval,Larval,Whole Organism,All anatomical structures 39758,SRR2125734,SRX1117103,SRS1010313,SRP061528,PRJNA290839,Danio rerio Transcriptome or Gene expression,PRJNA290839,Transcriptome Analysis,RNA Seq of Danio rerio transcriptome,,,,,AB2,,breed:not applicable|strain:not applicable|age:5 dpf provider:not applicable|sex:not collected|tissue:whole fish of AB2|treatment:WT|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of AB2,RNA Seq of AB2,1,Total RNA was extracted from the cells using the mirVanaTM isolation kit Applied Biosystems and treated with DNase Ambion to remove contaminating genomic DNA. Agilent 2100 Bioanalyzer system was used to assess RNA quality of samples and the samples with a RNA Integrity Number RIN greater than 9 were used for transcriptome library construction. cDNA library wasconstructed using TruSeq Stranded Total RNA LT Sample Prep Kit Illumina each prepared from 300ng of total RNA. The cDNA libraries were constructed according to manufacturer’s instruction and index codes were ligated as identification to individual samples as previous described. Briefly mRNA was purified from the total RNA using poly T oligo attached magnetic beads Illumina San Diego USA to remove the ribosomal RNA. Then the Mrna was fragmented by using divalent cations in Illumina proprietary fragmentation buffer at 94 ?C for 1 min. First strand cDNAs were synthesized using random oligonucleotides and SuperScript II then and second cDNAs were synthesized using DNA polymerase I and RNase H. Overhangs were blunted by using exonuclease/polymerase followed by 3’ end adenylation. post adenylation of 3’ ends of DNA fragments Illumina PE adapter oligonucleotides were ligated to DNA fragments. DNA fragments that ligated with adaptor molecules on both ends were selectively enriched using Illumina PCR Primer Cocktail in a 15 cycles PCR reaction. Libraries were purified using AMPure XP system and quantified using the KAPA Library Quantification Kits. Before submitted to sequencing the libraries were normalized and pooled together in a single lane on an Illumina MiSeq platform and 150 bp paired end reads were generated.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina MiSeq,3020Application ReadForward11Application ReadReverse152,SRP061528,,,AB2_S1_L001_R2_001.fastq.gz AB2_S1_L001_R1_001.fastq.gz,fastq fastq,829696252.0,2784590.0,RNA Seq of AB2,0:149.00 1:148.96,A:218353676;C:195998962;G:195017076;T:220297820;N:28718,149,148,,,218353676,195998962,195017076,220297820,28718,SRX1117103,SRS1010313,SRA279862,The Chinese University of Hong Kong,The Chinese University of Hong Kong,2,0.96274,0.96494,0.05571,0.05462,0.73588,0.73657,0.48938,0.48219,149,151,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,trueseq,bulk,bulk,bulk,,China,2015-07-24,Larval,Larval,Whole Organism,All anatomical structures 39759,SRR2125733,SRX1117102,SRS1010312,SRP061528,PRJNA290839,Danio rerio Transcriptome or Gene expression,PRJNA290839,Transcriptome Analysis,RNA Seq of Danio rerio transcriptome,,,,,WT,,breed:not applicable|strain:not applicable|age:5 dpf provider:not applicable|sex:not collected|tissue:whole fish of WT|treatment:WT|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of WT,RNA Seq of WT,1,Total RNA was extracted from the cells using the mirVanaTM isolation kit Applied Biosystems and treated with DNase Ambion to remove contaminating genomic DNA. Agilent 2100 Bioanalyzer system was used to assess RNA quality of samples and the samples with a RNA Integrity Number RIN greater than 9 were used for transcriptome library construction. cDNA library wasconstructed using TruSeq Stranded Total RNA LT Sample Prep Kit Illumina each prepared from 300ng of total RNA. The cDNA libraries were constructed according to manufacturer’s instruction and index codes were ligated as identification to individual samples as previous described. Briefly mRNA was purified from the total RNA using poly T oligo attached magnetic beads Illumina San Diego USA to remove the ribosomal RNA. Then the Mrna was fragmented by using divalent cations in Illumina proprietary fragmentation buffer at 94 ?C for 1 min. First strand cDNAs were synthesized using random oligonucleotides and SuperScript II then and second cDNAs were synthesized using DNA polymerase I and RNase H. Overhangs were blunted by using exonuclease/polymerase followed by 3’ end adenylation. post adenylation of 3’ ends of DNA fragments Illumina PE adapter oligonucleotides were ligated to DNA fragments. DNA fragments that ligated with adaptor molecules on both ends were selectively enriched using Illumina PCR Primer Cocktail in a 15 cycles PCR reaction. Libraries were purified using AMPure XP system and quantified using the KAPA Library Quantification Kits. Before submitted to sequencing the libraries were normalized and pooled together in a single lane on an Illumina MiSeq platform and 150 bp paired end reads were generated.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina MiSeq,3020Application ReadForward11Application ReadReverse152,SRP061528,,,wt_S1_L001_R1_001.fastq.gz wt_S1_L001_R2_001.fastq.gz,fastq fastq,1937209279.0,6445507.0,RNA Seq of WT,0:150.30 1:150.25,A:496555264;C:470694471;G:467911055;T:502040892;N:7597,150,150,,,496555264,470694471,467911055,502040892,7597,SRX1117102,SRS1010312,SRA279862,The Chinese University of Hong Kong,The Chinese University of Hong Kong,2,0.95931,0.96087,0.06913,0.06787,0.66101,0.66431,0.45529,0.4629,151,151,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,trueseq,bulk,bulk,bulk,,China,2016-07-24,Larval,Larval,Whole Organism,All anatomical structures 68202,SRR17658919,SRX13826963,SRS11706208,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,CLF duplication 3,Ctrl3 liver female 3,,strain:AB|dev stage:adult12|sex:female|tissue:liver12|BioSampleModel:Model organism or animal,,,,,,,,,CLF duplication 3,Ctrl3 liver female 3,Ctrl3 liver female 3,Ctrl3 liver female 3,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,CLF3_1.fq.gz CLF3_2.fq.gz,fastq fastq,6712722900.0,22375743.0,CLF3 1.fq.gz,0:150 1:150,A:1783792403;C:1575082041;G:1585315564;T:1767759802;N:773090,150,150,,,1783792403,1575082041,1585315564,1767759802,773090,SRX13826963,SRS11706208,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.9662,0.96595,0.01762,0.01789,0.8887,0.88828,0.15778,0.15829,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68203,SRR17658920,SRX13826962,SRS11706207,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z1LF duplication 1,Zincone1 liver female 1,,strain:AB|dev stage:adult13|sex:female|tissue:liver13|BioSampleModel:Model organism or animal,,,,,,,,,Z1LF duplication 1,Zincone1 liver female 1,Zincone1 liver female 1,Zincone1 liver female 1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z1LF1_2.fq.gz Z1LF1_1.fq.gz,fastq fastq,6782491200.0,22608304.0,Z1LF1 1.fq.gz,0:150 1:150,A:1789405575;C:1606823947;G:1605287980;T:1780124329;N:849369,150,150,,,1789405575,1606823947,1605287980,1780124329,849369,SRX13826962,SRS11706207,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.96811,0.9688,0.02477,0.02493,0.88345,0.88316,0.13943,0.13875,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68204,SRR17658921,SRX13826961,SRS11706206,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z1LF duplication 2,Zincone2 liver female 2,,strain:AB|dev stage:adult14|sex:female|tissue:liver14|BioSampleModel:Model organism or animal,,,,,,,,,Z1LF duplication 2,Zincone2 liver female 2,Zincone2 liver female 2,Zincone2 liver female 2,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z1LF2_1.fq.gz Z1LF2_2.fq.gz,fastq fastq,6742673100.0,22475577.0,Z1LF2 1.fq.gz,0:150 1:150,A:1792296919;C:1582977645;G:1582194285;T:1784406986;N:797265,150,150,,,1792296919,1582977645,1582194285,1784406986,797265,SRX13826961,SRS11706206,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.96512,0.96401,0.02268,0.02287,0.8784,0.87868,0.1342,0.13433,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68205,SRR17658922,SRX13826960,SRS11706205,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z1LF duplication 3,Zincone3 liver female 3,,strain:AB|dev stage:adult15|sex:female|tissue:liver15|BioSampleModel:Model organism or animal,,,,,,,,,Z1LF duplication 3,Zincone3 liver female 3,Zincone3 liver female 3,Zincone3 liver female 3,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z1LF3_1.fq.gz Z1LF3_2.fq.gz,fastq fastq,6555789600.0,21852632.0,Z1LF3 1.fq.gz,0:150 1:150,A:1740411957;C:1542518108;G:1546876211;T:1725095326;N:887998,150,150,,,1740411957,1542518108,1546876211,1725095326,887998,SRX13826960,SRS11706205,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.97082,0.96989,0.0152,0.01505,0.88631,0.88724,0.13052,0.12964,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68206,SRR17658923,SRX13826959,SRS11706204,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z15LF duplication 1,Zincfifteen1 liver female 1,,strain:AB|dev stage:adult16|sex:female|tissue:liver16|BioSampleModel:Model organism or animal,,,,,,,,,Z15LF duplication 1,Zincfifteen1 liver female 1,Zincfifteen1 liver female 1,Zincfifteen1 liver female 1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z15LF1_1.fq.gz Z15LF1_2.fq.gz,fastq fastq,7344256200.0,24480854.0,Z15LF1 1.fq.gz,0:150 1:150,A:1953297569;C:1721783315;G:1723246630;T:1944923505;N:1005181,150,150,,,1953297569,1721783315,1723246630,1944923505,1005181,SRX13826959,SRS11706204,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.96164,0.96146,0.02099,0.02076,0.84435,0.84382,0.18255,0.18129,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68207,SRR17658924,SRX13826958,SRS11706203,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z15LF duplication 2,Zincfifteen2 liver female 2,,strain:AB|dev stage:adult17|sex:female|tissue:liver17|BioSampleModel:Model organism or animal,,,,,,,,,Z15LF duplication 2,Zincfifteen2 liver female 2,Zincfifteen2 liver female 2,Zincfifteen2 liver female 2,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z15LF2_1.fq.gz Z15LF2_2.fq.gz,fastq fastq,6523296300.0,21744321.0,Z15LF2 1.fq.gz,0:150 1:150,A:1735374953;C:1531912121;G:1535810321;T:1719318826;N:880079,150,150,,,1735374953,1531912121,1535810321,1719318826,880079,SRX13826958,SRS11706203,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.959,0.95952,0.01831,0.0182,0.85171,0.85066,0.15523,0.1564,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68208,SRR17658925,SRX13826957,SRS11706202,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z15LF duplication 3,Zincfifteen3 liver female 3,,strain:AB|dev stage:adult18|sex:female|tissue:liver18|BioSampleModel:Model organism or animal,,,,,,,,,Z15LF duplication 3,Zincfifteen3 liver female 3,Zincfifteen3 liver female 3,Zincfifteen3 liver female 3,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z15LF3_1.fq.gz Z15LF3_2.fq.gz,fastq fastq,6888482100.0,22961607.0,Z15LF3 1.fq.gz,0:150 1:150,A:1827448725;C:1620084791;G:1622301074;T:1817887819;N:759691,150,150,,,1827448725,1620084791,1622301074,1817887819,759691,SRX13826957,SRS11706202,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.96506,0.96439,0.01655,0.0167,0.87271,0.87249,0.16667,0.16564,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68209,SRR17658926,SRX13826956,SRS11706201,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,CLM duplication 3,Ctrl3 liver male 3,,strain:AB|dev stage:adult3|sex:male|tissue:liver3|BioSampleModel:Model organism or animal,,,,,,,,,CLM duplication 3,Ctrl3 liver male 3,Ctrl3 liver male 3,Ctrl3 liver male 3,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,CLM3_2.fq CLM3_1.fq,fastq fastq,6606443100.0,22021477.0,CLM3 1.fq.gz,0:150 1:150,A:1777279847;C:1534028478;G:1528635294;T:1765666817;N:832664,150,150,,,1777279847,1534028478,1528635294,1765666817,832664,SRX13826956,SRS11706201,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.93213,0.93163,0.06107,0.06084,0.75666,0.75603,0.54196,0.54443,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68210,SRR17658927,SRX13826955,SRS11706200,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z1LM duplication 1,Zincone1 liver male 1,,strain:AB|dev stage:adult4|sex:male|tissue:liver4|BioSampleModel:Model organism or animal,,,,,,,,,Z1LM duplication 1,Zincone1 liver male 1,Zincone1 liver male 1,Zincone1 liver male 1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z1LM1_1.fq Z1LM1_2.fq,fastq fastq,6741311100.0,22471037.0,Z1LM1 1.fq.gz,0:150 1:150,A:1818234893;C:1561053990;G:1554750970;T:1806437004;N:834243,150,150,,,1818234893,1561053990,1554750970,1806437004,834243,SRX13826955,SRS11706200,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.93276,0.93194,0.05764,0.05747,0.76723,0.76816,0.5389,0.54506,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68211,SRR17658928,SRX13826954,SRS11706199,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z1LM duplication 2,Zincone2 liver male 2,,strain:AB|dev stage:adult5|sex:male|tissue:liver5|BioSampleModel:Model organism or animal,,,,,,,,,Z1LM duplication 2,Zincone2 liver male 2,Zincone2 liver male 2,Zincone2 liver male 2,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z1LM2_1.fq Z1LM2_2.fq,fastq fastq,6509324700.0,21697749.0,Z1LM2 1.fq.gz,0:150 1:150,A:1745461645;C:1518249267;G:1510755337;T:1734046233;N:812218,150,150,,,1745461645,1518249267,1510755337,1734046233,812218,SRX13826954,SRS11706199,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.93476,0.93434,0.05409,0.05354,0.79957,0.79951,0.55566,0.52228,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68212,SRR17658929,SRX13826953,SRS11706198,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z1LM duplication 3,Zincone3 liver male 3,,strain:AB|dev stage:adult6|sex:male|tissue:liver6|BioSampleModel:Model organism or animal,,,,,,,,,Z1LM duplication 3,Zincone3 liver male 3,Zincone3 liver male 3,Zincone3 liver male 3,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z1LM3_1.fq Z1LM3_2.fq,fastq fastq,6261575700.0,20871919.0,Z1LM3 1.fq.gz,0:150 1:150,A:1684610294;C:1451805203;G:1450074539;T:1674385111;N:700553,150,150,,,1684610294,1451805203,1450074539,1674385111,700553,SRX13826953,SRS11706198,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.93933,0.93868,0.04817,0.0481,0.79827,0.79809,0.54124,0.54121,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68213,SRR17658930,SRX13826952,SRS11706197,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z15LM duplication 1,Zincfifteen1 liver male 1,,strain:AB|dev stage:adult7|sex:male|tissue:liver7|BioSampleModel:Model organism or animal,,,,,,,,,Z15LM duplication 1,Zincfifteen1 liver male 1,Zincfifteen1 liver male 1,Zincfifteen1 liver male 1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z15LM1_2.fq Z15LM1_1.fq,fastq fastq,6119041200.0,20396804.0,Z15LM1 1.fq.gz,0:150 1:150,A:1708841791;C:1358255036;G:1356221893;T:1694882465;N:840015,150,150,,,1708841791,1358255036,1356221893,1694882465,840015,SRX13826952,SRS11706197,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.91348,0.91321,0.09327,0.09367,0.79724,0.79823,0.5389,0.54265,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68214,SRR17658931,SRX13826951,SRS11706196,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z15LM duplication 2,Zincfifteen2 liver male 2,,strain:AB|dev stage:adult8|sex:male|tissue:liver8|BioSampleModel:Model organism or animal,,,,,,,,,Z15LM duplication 2,Zincfifteen2 liver male 2,Zincfifteen2 liver male 2,Zincfifteen2 liver male 2,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z15LM2_1.fq Z15LM2_2.fq,fastq fastq,6552076200.0,21840254.0,Z15LM2 1.fq.gz,0:150 1:150,A:1784893310;C:1497246024;G:1496209826;T:1772959594;N:767446,150,150,,,1784893310,1497246024,1496209826,1772959594,767446,SRX13826951,SRS11706196,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.92103,0.88328,0.06799,0.0651,0.80111,0.80375,0.52001,0.52243,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68215,SRR17658932,SRX13826950,SRS11706195,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,Z15LM duplication 3,Zincfifteen3 liver male 3,,strain:AB|dev stage:adult9|sex:male|tissue:liver9|BioSampleModel:Model organism or animal,,,,,,,,,Z15LM duplication 3,Zincfifteen3 liver male 3,Zincfifteen3 liver male 3,Zincfifteen3 liver male 3,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,Z15LM3_2.fq Z15LM3_1.fq,fastq fastq,6613075500.0,22043585.0,Z15LM3 1.fq.gz,0:150 1:150,A:1829632707;C:1481626514;G:1478583785;T:1822428644;N:803850,150,150,,,1829632707,1481626514,1478583785,1822428644,803850,SRX13826950,SRS11706195,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.92586,0.92593,0.07409,0.0739,0.79825,0.79782,0.54697,0.56135,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68216,SRR17658933,SRX13826949,SRS11706194,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,CLF duplication 1,Ctrl1 liver female 1,,strain:AB|dev stage:adult10|sex:female|tissue:liver10|BioSampleModel:Model organism or animal,,,,,,,,,CLF duplication 1,Ctrl1 liver female 1,Ctrl1 liver female 1,Ctrl1 liver female 1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,CLF1_2.fq.gz CLF1_1.fq.gz,fastq fastq,6788319600.0,22627732.0,CLF1 1.fq.gz,0:150 1:150,A:1797700930;C:1597670360;G:1600243352;T:1791794495;N:910463,150,150,,,1797700930,1597670360,1600243352,1791794495,910463,SRX13826949,SRS11706194,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.96283,0.96304,0.01885,0.01848,0.88146,0.8813,0.12716,0.12628,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68217,SRR17658934,SRX13826948,SRS11706193,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,CLF duplication 2,Ctrl2 liver female 2,,strain:AB|dev stage:adult11|sex:female|tissue:liver11|BioSampleModel:Model organism or animal,,,,,,,,,CLF duplication 2,Ctrl2 liver female 2,Ctrl2 liver female 2,Ctrl2 liver female 2,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,CLF2_1.fq.gz CLF2_2.fq.gz,fastq fastq,6566130000.0,21887100.0,CLF2 1.fq.gz,0:150 1:150,A:1693396647;C:1592638985;G:1596063815;T:1683113075;N:917478,150,150,,,1693396647,1592638985,1596063815,1683113075,917478,SRX13826948,SRS11706193,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.9676,0.9677,0.03192,0.03218,0.88933,0.88974,0.18018,0.18049,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-19,Adult,Adult,Liver,Liver and Biliary System 68218,SRR17658935,SRX13826947,SRS11706192,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,CLM duplication 2,Ctrl2 liver male 2,,strain:AB|dev stage:adult2|sex:male|tissue:liver2|BioSampleModel:Model organism or animal,,,,,,,,,CLM duplication 2,Ctrl2 liver male 2,Ctrl2 liver male 2,Ctrl2 liver male 2,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,CLM2_1.fq CLM2_2.fq,fastq fastq,6818619600.0,22728732.0,CLM2 1.fq.gz,0:150 1:150,A:1836496438;C:1579813064;G:1581457462;T:1819932440;N:920196,150,150,,,1836496438,1579813064,1581457462,1819932440,920196,SRX13826947,SRS11706192,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.9345,0.93447,0.05172,0.05186,0.80872,0.8085,0.56518,0.56162,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System 68219,SRR17658936,SRX13826946,SRS11706191,SRP355728,PRJNA798522,Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish,PRJNA798522,Other,Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity,,,,CLM duplication 1,Ctrl1 liver male 1,,strain:AB|dev stage:adult1|sex:male|tissue:liver1|BioSampleModel:Model organism or animal,,,,,,,,,CLM duplication 1,Ctrl1 liver male 1,Ctrl1 liver male 1,Ctrl1 liver male 1,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP355728,,,CLM1_2.fq CLM1_1.fq,fastq fastq,6807987300.0,22693291.0,CLM1 1.fq.gz,0:150 1:150,A:1850045257;C:1563059357;G:1561128689;T:1832890808;N:863189,150,150,,,1850045257,1563059357,1561128689,1832890808,863189,SRX13826946,SRS11706191,SRA1358625,Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center,Chinese Academy of Fishery Sciences,2,0.93418,0.93397,0.05345,0.05329,0.77938,0.77826,0.56496,0.56363,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,bulk,bulk,,China,2022-01-21,Adult,Adult,Liver,Liver and Biliary System