rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 125,DRR189379,DRX179844,DRS200410,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of EMX3 / larval zebrafish 5dpf 3,SAMD00182222,,sample name:Emx3 Larva body 3|genotype:Emx3 / |tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182222,DRX179844,Emx3 / Larva body 3,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,360Application ReadForward1,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182222,,,,1759409208.0,48872478.0,DRR189379,0:36,A:401147348;C:424523813;G:426350919;T:507310828;N:76300,36,,,,401147348,424523813,426350919,507310828,76300,DRX179844,DRS200410,DRA008857,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.90975,,0.11439,,0.66076,,0.47775,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure 126,DRR189378,DRX179843,DRS200409,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of EMX3 / larval zebrafish 5dpf 2,SAMD00182221,,sample name:Emx3 Larva body 2|genotype:Emx3 / |tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182221,DRX179843,Emx3 / Larva body 2,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,360Application ReadForward1,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182221,,,,1318201020.0,36616695.0,DRR189378,0:36,A:297850068;C:316786585;G:323717530;T:379789606;N:57231,36,,,,297850068,316786585,323717530,379789606,57231,DRX179843,DRS200409,DRA008857,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.9116,,0.11269,,0.65837,,0.46733,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure 127,DRR189377,DRX179842,DRS200408,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of EMX3 / larval zebrafish 5dpf 1,SAMD00182220,,sample name:Emx3 Larva body 1|genotype:Emx3 / |tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182220,DRX179842,Emx3 / Larva body 1,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,360Application ReadForward1,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182220,,,,812483964.0,22568999.0,DRR189377,0:36,A:185173338;C:197790160;G:197482964;T:232000884;N:36618,36,,,,185173338,197790160,197482964,232000884,36618,DRX179842,DRS200408,DRA008857,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.91107,,0.1171,,0.65981,,0.47458,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure 128,DRR189376,DRX179841,DRS200449,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of wild type larval zebrafish 5dpf 3,SAMD00182219,,sample name:WT Larva body 3|genotype:wild type|tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182219,DRX179841,WT Larva body 3,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,360Application ReadForward1,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182219,,,,4030038144.0,111945504.0,DRR189376,0:36,A:943709984;C:971756680;G:977594500;T:1136798448;N:178532,36,,,,943709984,971756680,977594500,1136798448,178532,DRX179841,DRS200449,DRA008856,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.89574,,0.12331,,0.65831,,0.48096,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure 129,DRR189375,DRX179840,DRS200448,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of wild type larval zebrafish 5dpf 2,SAMD00182218,,sample name:WT Larva body 2|genotype:wild type|tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182218,DRX179840,WT Larva body 2,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,360Application ReadForward1,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182218,,,,1991670804.0,55324189.0,DRR189375,0:36,A:454367176;C:479012055;G:488407231;T:569793674;N:90668,36,,,,454367176,479012055,488407231,569793674,90668,DRX179840,DRS200448,DRA008856,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.90911,,0.12455,,0.65494,,0.47971,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure 130,DRR189374,DRX179839,DRS200447,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of wild type larval zebrafish 5dpf 1,SAMD00182217,,sample name:WT Larva body 1|genotype:wild type|tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182217,DRX179839,WT Larva body 1,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,360Application ReadForward1,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182217,,,,1018340100.0,28287225.0,DRR189374,0:36,A:233370050;C:244140659;G:247795084;T:292989542;N:44765,36,,,,233370050,244140659,247795084,292989542,44765,DRX179839,DRS200447,DRA008856,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.91078,,0.12578,,0.6524,,0.48016,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure 288,DRR224554,DRX214839,DRS236362,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish Adult C,SAMD00222585,,sample name:Adult C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222585,DRX214839,Adult C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222585,,,,11727505800.0,58637529.0,DRR224554,0:100 1:100,A:3137648588;C:2705013210;G:3191753451;T:2692963496;N:127055,100,100,,,3137648588,2705013210,3191753451,2692963496,127055,DRX214839,DRS236362,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.95934,0.93156,0.03853,0.0394,0.72683,0.74625,0.45812,0.47098,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Adult,Adult,Fin,Surface Structure 289,DRR224553,DRX214838,DRS236361,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish Adult B,SAMD00222584,,sample name:Adult B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222584,DRX214838,Adult B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222584,,,,22010855600.0,110054278.0,DRR224553,0:100 1:100,A:5511440112;C:5498539659;G:5546758172;T:5453879750;N:237907,100,100,,,5511440112,5498539659,5546758172,5453879750,237907,DRX214838,DRS236361,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.95774,0.95394,0.04568,0.04411,0.70701,0.70881,0.47041,0.47938,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Adult,Adult,Fin,Surface Structure 290,DRR224552,DRX214837,DRS236360,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish Adult A,SAMD00222583,,sample name:Adult A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222583,DRX214837,Adult A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222583,,,,17683281000.0,88416405.0,DRR224552,0:100 1:100,A:4386756926;C:4479415938;G:4578796094;T:4238125580;N:186462,100,100,,,4386756926,4479415938,4578796094,4238125580,186462,DRX214837,DRS236360,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.95974,0.95566,0.05237,0.05086,0.74357,0.74742,0.48578,0.49971,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Adult,Adult,Fin,Surface Structure 291,DRR224551,DRX214836,DRS236359,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 42dpf C,SAMD00222582,,sample name:42dpf C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222582,DRX214836,42dpf C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222582,,,,14328721000.0,71643605.0,DRR224551,0:100 1:100,A:3545040254;C:3629416092;G:3695002549;T:3459108561;N:153544,100,100,,,3545040254,3629416092,3695002549,3459108561,153544,DRX214836,DRS236359,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.9671,0.95979,0.04174,0.04058,0.71867,0.72143,0.44818,0.46122,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Juvenile,Juvenile,Fin,Surface Structure 292,DRR224550,DRX214835,DRS236358,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 42dpf B,SAMD00222581,,sample name:42dpf B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222581,DRX214835,42dpf B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222581,,,,14782437000.0,73912185.0,DRR224550,0:100 1:100,A:3652595601;C:3746189790;G:3788229051;T:3595263949;N:158609,100,100,,,3652595601,3746189790,3788229051,3595263949,158609,DRX214835,DRS236358,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96502,0.95776,0.0417,0.0399,0.71311,0.71423,0.46064,0.44469,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Juvenile,Juvenile,Fin,Surface Structure 293,DRR224549,DRX214834,DRS236357,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 42dpf A,SAMD00222580,,sample name:42dpf A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222580,DRX214834,42dpf A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222580,,,,17895751600.0,89478758.0,DRR224549,0:100 1:100,A:4428562207;C:4525140210;G:4573827895;T:4368029340;N:191948,100,100,,,4428562207,4525140210,4573827895,4368029340,191948,DRX214834,DRS236357,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96506,0.96043,0.04654,0.0446,0.70956,0.71153,0.49143,0.48957,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Juvenile,Juvenile,Fin,Surface Structure 294,DRR224548,DRX214833,DRS236356,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 28dpf C,SAMD00222579,,sample name:28dpf C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222579,DRX214833,28dpf C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222579,,,,16269568600.0,81347843.0,DRR224548,0:100 1:100,A:3978004953;C:4160626131;G:4174223034;T:3956539398;N:175084,100,100,,,3978004953,4160626131,4174223034,3956539398,175084,DRX214833,DRS236356,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.9633,0.95842,0.0474,0.04564,0.72184,0.72253,0.47871,0.46471,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 295,DRR224547,DRX214832,DRS236355,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 28dpf B,SAMD00222578,,sample name:28dpf B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222578,DRX214832,28dpf B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222578,,,,19970979800.0,99854899.0,DRR224547,0:100 1:100,A:5064043525;C:4909415172;G:5303813974;T:4693498507;N:208622,100,100,,,5064043525,4909415172,5303813974,4693498507,208622,DRX214832,DRS236355,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.95486,0.94587,0.05718,0.05404,0.73746,0.74754,0.51956,0.47088,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 296,DRR224546,DRX214831,DRS236354,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 28dpf A,SAMD00222577,,sample name:28dpf A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222577,DRX214831,28dpf A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222577,,,,17870876400.0,89354382.0,DRR224546,0:100 1:100,A:4431724830;C:4512913394;G:4543413766;T:4382632384;N:192026,100,100,,,4431724830,4512913394,4543413766,4382632384,192026,DRX214831,DRS236354,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.9608,0.95643,0.045,0.04296,0.7236,0.7234,0.50029,0.50287,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 297,DRR224545,DRX214830,DRS236353,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 14dpf C,SAMD00222576,,sample name:14dpf C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222576,DRX214830,14dpf C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222576,,,,16979810200.0,84899051.0,DRR224545,0:100 1:100,A:4241907225;C:4256915446;G:4277991608;T:4202813567;N:182354,100,100,,,4241907225,4256915446,4277991608,4202813567,182354,DRX214830,DRS236353,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96662,0.96168,0.03768,0.03562,0.72368,0.72464,0.48494,0.48687,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 298,DRR224544,DRX214829,DRS236352,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 14dpf B,SAMD00222575,,sample name:14dpf B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222575,DRX214829,14dpf B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222575,,,,18273780000.0,91368900.0,DRR224544,0:100 1:100,A:4545336763;C:4589502978;G:4635310325;T:4503435996;N:193938,100,100,,,4545336763,4589502978,4635310325,4503435996,193938,DRX214829,DRS236352,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.97073,0.96595,0.03063,0.02973,0.73632,0.73758,0.47494,0.46918,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 299,DRR224543,DRX214828,DRS236351,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 14dpf A,SAMD00222574,,sample name:14dpf A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222574,DRX214828,14dpf A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222574,,,,18294607600.0,91473038.0,DRR224543,0:100 1:100,A:4623135433;C:4539347940;G:4561846652;T:4570079366;N:198209,100,100,,,4623135433,4539347940,4561846652,4570079366,198209,DRX214828,DRS236351,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96261,0.9592,0.02999,0.02873,0.72699,0.72796,0.4679,0.46591,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 300,DRR224542,DRX214827,DRS236350,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 5dpf C,SAMD00222573,,sample name:5dpf C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222573,DRX214827,5dpf C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222573,,,,18736996000.0,93684980.0,DRR224542,0:100 1:100,A:4647244376;C:4733187951;G:4746515898;T:4609906214;N:141561,100,100,,,4647244376,4733187951,4746515898,4609906214,141561,DRX214827,DRS236350,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.97229,0.96893,0.042,0.03995,0.74172,0.74328,0.44607,0.44755,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 301,DRR224541,DRX214826,DRS236349,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 5dpf B,SAMD00222572,,sample name:5dpf B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222572,DRX214826,5dpf B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222572,,,,22151021400.0,110755107.0,DRR224541,0:100 1:100,A:5555093734;C:5532777660;G:5592525988;T:5470461779;N:162239,100,100,,,5555093734,5532777660,5592525988,5470461779,162239,DRX214826,DRS236349,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96835,0.96645,0.04001,0.03872,0.72865,0.72934,0.46355,0.46428,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 302,DRR224540,DRX214825,DRS236348,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin from RIKEN Wild type zebrafish at 5dpf A,SAMD00222571,,sample name:5dpf A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222571,DRX214825,5dpf A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222571,,,,18219864200.0,91099321.0,DRR224540,0:100 1:100,A:4485880313;C:4629712312;G:4617351502;T:4486786107;N:133966,100,100,,,4485880313,4629712312,4617351502,4486786107,133966,DRX214825,DRS236348,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.97075,0.96902,0.04498,0.0432,0.72971,0.73044,0.45267,0.4604,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Larval,Larval,Fin,Surface Structure 303,DRR224539,DRX214824,DRS236347,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 48hpf C,SAMD00222570,,sample name:48hpf C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222570,DRX214824,48hpf C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222570,,,,16828182200.0,84140911.0,DRR224539,0:100 1:100,A:3957959900;C:4467368792;G:4483580218;T:3919146988;N:126302,100,100,,,3957959900,4467368792,4483580218,3919146988,126302,DRX214824,DRS236347,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.97277,0.97115,0.05409,0.05185,0.76717,0.76836,0.46592,0.45571,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Hatching,Embryo,Fin,Surface Structure 304,DRR224538,DRX214823,DRS236346,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 48hpf B,SAMD00222569,,sample name:48hpf B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222569,DRX214823,48hpf B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222569,,,,22815822200.0,114079111.0,DRR224538,0:100 1:100,A:5651922913;C:5760379580;G:5844694518;T:5558658503;N:166686,100,100,,,5651922913,5760379580,5844694518,5558658503,166686,DRX214823,DRS236346,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96814,0.96379,0.03526,0.03362,0.71575,0.71697,0.47605,0.47359,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Hatching,Embryo,Fin,Surface Structure 305,DRR224537,DRX214822,DRS236345,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 48hpf A,SAMD00222568,,sample name:48hpf A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222568,DRX214822,48hpf A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222568,,,,13993230400.0,69966152.0,DRR224537,0:100 1:100,A:3484590137;C:3511805255;G:3624285719;T:3372446706;N:102583,100,100,,,3484590137,3511805255,3624285719,3372446706,102583,DRX214822,DRS236345,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96467,0.96428,0.04367,0.04212,0.72853,0.73125,0.49715,0.49652,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Hatching,Embryo,Fin,Surface Structure 306,DRR224536,DRX214821,DRS236344,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 40hpf C,SAMD00222567,,sample name:40hpf C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222567,DRX214821,40hpf C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222567,,,,14926054400.0,74630272.0,DRR224536,0:100 1:100,A:3647365116;C:3826172690;G:3866071867;T:3586333511;N:111216,100,100,,,3647365116,3826172690,3866071867,3586333511,111216,DRX214821,DRS236344,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96395,0.96168,0.05081,0.04957,0.75489,0.75607,0.51046,0.52135,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Pharyngula,Embryo,Fin,Surface Structure 307,DRR224535,DRX214820,DRS236343,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 40hpf B,SAMD00222566,,sample name:40hpf B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222566,DRX214820,40hpf B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222566,,,,14413995800.0,72069979.0,DRR224535,0:100 1:100,A:3598207137;C:3642219692;G:3750145663;T:3423315835;N:107473,100,100,,,3598207137,3642219692,3750145663,3423315835,107473,DRX214820,DRS236343,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.97396,0.97107,0.04686,0.04549,0.7444,0.74968,0.50051,0.49798,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Pharyngula,Embryo,Fin,Surface Structure 308,DRR224534,DRX214819,DRS236342,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 40hpf A,SAMD00222565,,sample name:40hpf A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222565,DRX214819,40hpf A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222565,,,,14351831800.0,71759159.0,DRR224534,0:100 1:100,A:3552114377;C:3639389412;G:3719404253;T:3440817088;N:106670,100,100,,,3552114377,3639389412,3719404253,3440817088,106670,DRX214819,DRS236342,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.96606,0.96569,0.04249,0.04107,0.7514,0.75367,0.49762,0.49753,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Pharyngula,Embryo,Fin,Surface Structure 309,DRR224533,DRX214818,DRS236341,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 32hpf C,SAMD00222564,,sample name:32hpf C,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222564,DRX214818,32hpf C,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222564,,,,18499667800.0,92498339.0,DRR224533,0:100 1:100,A:4655671152;C:4605325822;G:4688156846;T:4550378341;N:135639,100,100,,,4655671152,4605325822,4688156846,4550378341,135639,DRX214818,DRS236341,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.9673,0.96864,0.04184,0.04008,0.73087,0.73318,0.48331,0.48043,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Pharyngula,Embryo,Fin,Surface Structure 310,DRR224532,DRX214817,DRS236340,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 32hpf B,SAMD00222563,,sample name:32hpf B,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222563,DRX214817,32hpf B,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222563,,,,19952418000.0,99762090.0,DRR224532,0:100 1:100,A:4972665902;C:5012518349;G:5094132814;T:4872951533;N:149402,100,100,,,4972665902,5012518349,5094132814,4872951533,149402,DRX214817,DRS236340,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.97325,0.97252,0.03729,0.03575,0.71591,0.7163,0.47191,0.47859,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Pharyngula,Embryo,Fin,Surface Structure 311,DRR224531,DRX214816,DRS236339,DRP008458,PRJDB9741,RNA seq for developing pectoral fin in zebrafish,DRP008458,Other,From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.,,,,pectoral fin bud from gM1116A zebrafish at 32hpf A,SAMD00222562,,sample name:32hpf A,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00222562,DRX214816,32hpf A,1,Illumina TruSeq Stranded mRNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,2000Application ReadForward11Application ReadReverse101,DRP008458,Illumina NovaSeq 6000 paired end sequencing of SAMD00222562,,,,16357024800.0,81785124.0,DRR224531,0:100 1:100,A:4049805675;C:4130985751;G:4172952730;T:4003159212;N:121432,100,100,,,4049805675,4130985751,4172952730,4003159212,121432,DRX214816,DRS236339,DRA010086,TOHOKUGL|Laboratory of organ morphogenesis,"Graduate School of Life Sciences, Tohoku University",2,0.97046,0.96886,0.03577,0.03489,0.73257,0.73231,0.4825,0.48849,100,100,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Japan,2022-04-21,Pharyngula,Embryo,Fin,Surface Structure 33125,SRR29811637,SRX25310837,SRS21984646,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,long term LAP leachate 3,LLAP3,,breed:AB|age:120 hours 9|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1471A,LR240511O 1471A,mRNA seq of Danio rerio relication 3 of LLAP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,LR3.R2.fq.gz LR3.R1.fq.gz,fastq fastq,7498719600.0,24995732.0,LR3.R1.fq.gz,0:150 1:150,A:1840764729;C:1818513353;G:1983502172;T:1855787349;N:151997,150,150,,,1840764729,1818513353,1983502172,1855787349,151997,SRX25310837,SRS21984646,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.9136,0.89307,0.07212,0.07059,0.6646,0.66661,0.47616,0.47357,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33126,SRR29811638,SRX25310836,SRS21984651,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,long term LAP leachate 2,LLAP2,,breed:AB|age:120 hours 8|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1470A,LR240511O 1470A,mRNA seq of Danio rerio relication 2 of LLAP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,LR2.R1.fq.gz LR2.R2.fq.gz,fastq fastq,6564182700.0,21880609.0,LR2.R1.fq.gz,0:150 1:150,A:1746763337;C:1207489067;G:1880015332;T:1729775508;N:139456,150,150,,,1746763337,1207489067,1880015332,1729775508,139456,SRX25310836,SRS21984651,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.88206,0.77219,0.15745,0.13819,0.7024,0.70473,0.50824,0.50933,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33127,SRR29811639,SRX25310835,SRS21984645,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,long term LAP leachate 1,LLAP1,,breed:AB|age:120 hours 7|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1469A,LR240511O 1469A,mRNA seq of Danio rerio relication 1 of LLAP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,LR1.R2.fq.gz LR1.R1.fq.gz,fastq fastq,7872238200.0,26240794.0,LR1.R1.fq.gz,0:150 1:150,A:2072343735;C:1788675601;G:1954568005;T:2056488656;N:162203,150,150,,,2072343735,1788675601,1954568005,2056488656,162203,SRX25310835,SRS21984645,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.89866,0.88369,0.11023,0.10907,0.67491,0.67683,0.4824,0.48524,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33128,SRR29811640,SRX25310834,SRS21984644,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,long term TWP leachate 3,LTWP3,,breed:AB|age:120 hours 6|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1468A,LR240511O 1468A,mRNA seq of Danio rerio relication 3 of LTWP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,MR3.R1.fq.gz MR3.R2.fq.gz,fastq fastq,6425482800.0,21418276.0,MR3.R1.fq.gz,0:150 1:150,A:1590904460;C:1556914666;G:1685823262;T:1591710906;N:129506,150,150,,,1590904460,1556914666,1685823262,1591710906,129506,SRX25310834,SRS21984644,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.91895,0.90759,0.07582,0.07534,0.67446,0.67485,0.46453,0.46627,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33129,SRR29811641,SRX25310833,SRS21984643,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,long term TWP leachate 2,LTWP2,,breed:AB|age:120 hours 5|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1467A,LR240511O 1467A,mRNA seq of Danio rerio relication 2 of LTWP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,MR2.R1.fq.gz MR2.R2.fq.gz,fastq fastq,6383533200.0,21278444.0,MR2.R1.fq.gz,0:150 1:150,A:1717910384;C:1380510195;G:1592327928;T:1692660754;N:123939,150,150,,,1717910384,1380510195,1592327928,1692660754,123939,SRX25310833,SRS21984643,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.88766,0.86214,0.12652,0.12334,0.68631,0.68952,0.48978,0.48943,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33130,SRR29811642,SRX25310832,SRS21984642,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,long term TWP leachate 1,LTWP1,,breed:AB|age:120 hours 4|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1466A,LR240511O 1466A,mRNA seq of Danio rerio relication 1 of LTWP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,MR1.R1.fq.gz MR1.R2.fq.gz,fastq fastq,7846995900.0,26156653.0,MR1.R1.fq.gz,0:150 1:150,A:1992383226;C:1863588260;G:1991793371;T:1999072963;N:158080,150,150,,,1992383226,1863588260,1991793371,1999072963,158080,SRX25310832,SRS21984642,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.9046,0.89444,0.09962,0.09876,0.67744,0.67864,0.47577,0.47304,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33131,SRR29811643,SRX25310831,SRS21984641,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,control 3,CON3,,breed:AB|age:120 hours 3|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1465A,LR240511O 1465A,mRNA seq of Danio rerio relication 3 of CON,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,CR3.R1.fq.gz CR3.R2.fq.gz,fastq fastq,7149110700.0,23830369.0,CR3.R1.fq.gz,0:150 1:150,A:1820443769;C:1698664767;G:1803666123;T:1826190403;N:145638,150,150,,,1820443769,1698664767,1803666123,1826190403,145638,SRX25310831,SRS21984641,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.90756,0.89873,0.09562,0.09425,0.67146,0.67359,0.45981,0.46247,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33132,SRR29811644,SRX25310830,SRS21984640,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,control 2,CON2,,breed:AB|age:120 hours 2|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1464A,LR240511O 1464A,mRNA seq of Danio rerio relication 2 of CON,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,CR2.R1.fq.gz CR2.R2.fq.gz,fastq fastq,6812733600.0,22709112.0,CR2.R1.fq.gz,0:150 1:150,A:1792158799;C:1525869738;G:1711794485;T:1782779121;N:131457,150,150,,,1792158799,1525869738,1711794485,1782779121,131457,SRX25310830,SRS21984640,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.89909,0.8788,0.10828,0.10576,0.68335,0.68603,0.46708,0.47979,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33133,SRR29811645,SRX25310829,SRS21984639,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants contributing to the broader field of ecotoxicology and environmental safety.,,,,control 1,CON1,,breed:AB|age:120 hours 1|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1463A,LR240511O 1463A,mRNA seq of Danio rerio relication 1 of CON,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,CR1.R1.fq.gz CR1.R2.fq.gz,fastq fastq,6474517800.0,21581726.0,CR1.R1.fq.gz,0:150 1:150,A:1625286788;C:1547447403;G:1668730956;T:1632920740;N:131913,150,150,,,1625286788,1547447403,1668730956,1632920740,131913,SRX25310829,SRS21984639,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.9112,0.89637,0.08986,0.08847,0.67338,0.67363,0.46785,0.46816,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure 33837,SRR30763634,SRX26165999,SRS22710780,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin con2,Skin con 3,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin con 3|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin con 3,SK CON 3,SK CON 3,Zebrafish skin at control group,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_con2_Clean_Data1.fq.gz Skin_con2_Clean_Data2.fq.gz,fastq fastq,6083362246.0,21717347.0,Skin con2 Clean Data1.fq.gz,0:140.06 1:140.05,A:1575684711;C:1458969719;G:1469933956;T:1578641539;N:132321,140,140,,,1575684711,1458969719,1469933956,1578641539,132321,SRX26165999,SRS22710780,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33838,SRR30763635,SRX26165998,SRS22710779,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin con1,Skin con 2,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin con 2|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin con 2,SK CON 2,SK CON 2,Zebrafish skin at control group,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_con1_Clean_Data1.fq.gz Skin_con1_Clean_Data2.fq.gz,fastq fastq,5776524166.0,20610041.0,Skin con1 Clean Data1.fq.gz,0:140.14 1:140.13,A:1496887200;C:1385008310;G:1395131090;T:1499373290;N:124276,140,140,,,1496887200,1385008310,1395131090,1499373290,124276,SRX26165998,SRS22710779,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33839,SRR30763636,SRX26165997,SRS22710778,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin con,Skin con 1,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin con 1|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin con 1,SK CON 1,SK CON 1,Zebrafish skin at control group,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_con_Clean_Data1.fq.gz Skin_con_Clean_Data2.fq.gz,fastq fastq,5304184337.0,18925504.0,Skin con Clean Data1.fq.gz,0:140.14 1:140.13,A:1400015654;C:1245459230;G:1267684230;T:1391013551;N:11672,140,140,,,1400015654,1245459230,1267684230,1391013551,11672,SRX26165997,SRS22710778,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33840,SRR30763637,SRX26165996,SRS22710777,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin 3dpi2,Skin 3d 3,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 3dpi 3|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin 3d 3,SK 3D 3,SK 3D 3,Zebrafish skin at 3 dpv post immunization with glycoprotein of spring viraemia of carp virus,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_3dpi2_Clean_Data1.fq.gz Skin_3dpi2_Clean_Data2.fq.gz,fastq fastq,5528962547.0,19717071.0,Skin 3dpi2 Clean Data1.fq.gz,0:140.21 1:140.20,A:1434889776;C:1319598036;G:1335801562;T:1438550030;N:123143,140,140,,,1434889776,1319598036,1335801562,1438550030,123143,SRX26165996,SRS22710777,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33841,SRR30763638,SRX26165995,SRS22710776,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin 3dpi1,Skin 3d 2,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 3dpi 2|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin 3d 2,SK 3D 2,SK 3D 2,Zebrafish skin at 3 dpv post immunization with glycoprotein of spring viraemia of carp virus,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_3dpi1_Clean_Data1.fq.gz Skin_3dpi1_Clean_Data2.fq.gz,fastq fastq,6045424568.0,21559158.0,Skin 3dpi1 Clean Data1.fq.gz,0:140.21 1:140.20,A:1566211023;C:1442845401;G:1464489674;T:1571745680;N:132790,140,140,,,1566211023,1442845401,1464489674,1571745680,132790,SRX26165995,SRS22710776,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33842,SRR30763639,SRX26165994,SRS22710775,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin 3dpi,Skin 3d 1,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 3dpi 1|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin 3d 1,SK 3D 1,SK 3D 1,Zebrafish skin at 3 dpv post immunization with glycoprotein of spring viraemia of carp virus,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_3dpi_Clean_Data1.fq.gz Skin_3dpi_Clean_Data2.fq.gz,fastq fastq,5398897838.0,19388025.0,Skin 3dpi Clean Data1.fq.gz,0:139.24 1:139.23,A:1434301676;C:1260747084;G:1277759027;T:1426077485;N:12566,139,139,,,1434301676,1260747084,1277759027,1426077485,12566,SRX26165994,SRS22710775,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33843,SRR30763640,SRX26165993,SRS22710774,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin 1dpi2,Skin 1d 3,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 1dpi 3|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin 1d 3,SK 1D 3,SK 1D 3,Zebrafish skin at 1 dpv post immunization with glycoprotein of spring viraemia of carp virus,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_1dpi2_Clean_Data1.fq.gz Skin_1dpi2_Clean_Data2.fq.gz,fastq fastq,6317753535.0,22527726.0,Skin 1dpi2 Clean Data1.fq.gz,0:140.23 1:140.22,A:1637469629;C:1508203339;G:1526532646;T:1645411954;N:135967,140,140,,,1637469629,1508203339,1526532646,1645411954,135967,SRX26165993,SRS22710774,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33844,SRR30763641,SRX26165992,SRS22710773,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin 1dpi1,Skin 1d 2,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 1dpi 2|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin 1d 2,SK 1D 2,SK 1D 2,Zebrafish skin at 1 dpv post immunization with glycoprotein of spring viraemia of carp virus,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_1dpi1_Clean_Data1.fq.gz Skin_1dpi1_Clean_Data2.fq.gz,fastq fastq,5665401221.0,20209478.0,Skin 1dpi1 Clean Data1.fq.gz,0:140.17 1:140.16,A:1463485728;C:1359900876;G:1372085350;T:1469804976;N:124291,140,140,,,1463485728,1359900876,1372085350,1469804976,124291,SRX26165992,SRS22710773,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 33845,SRR30763642,SRX26165991,SRS22710772,SRP534093,PRJNA1163532,Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus,PRJNA1163532,Whole Genome Sequencing,,,,,Skin 1dpi,Skin 1d 1,,breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 1dpi 1|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish skin RNA seq Skin 1d 1,SK 1D 1,SK 1D 1,Zebrafish skin at 1 dpv post immunization with glycoprotein of spring viraemia of carp virus,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP534093,,,Skin_1dpi_Clean_Data1.fq.gz Skin_1dpi_Clean_Data2.fq.gz,fastq fastq,4758945020.0,17104843.0,Skin 1dpi Clean Data1.fq.gz,0:139.12 1:139.11,A:1261511064;C:1113177324;G:1128285977;T:1255959998;N:10657,139,139,,,1261511064,1113177324,1128285977,1255959998,10657,SRX26165991,SRS22710772,SRA1977051,Northwest A&F University|College of Animal Science and Technology,Northwest A&F University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-09-22,Adult,Adult,Skin,Surface Structure 36227,SRR33613672,SRX28842027,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 3,HFD 3,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-3-1.fq.gz HFD-3-2.fq.gz,fastq fastq,6810755100.0,22702517.0,HFD 3 1.fq.gz,0:150 1:150,A:1804127778;C:1596175018;G:1609090701;T:1801361603;N:0,150,150,,,1804127778,1596175018,1609090701,1801361603,0,SRX28842027,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36228,SRR33613673,SRX28842026,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 2,HFD 2,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-2-1.fq.gz HFD-2-2.fq.gz,fastq fastq,6826358400.0,22754528.0,HFD 2 1.fq.gz,0:150 1:150,A:1826465185;C:1582322712;G:1596188986;T:1821381517;N:0,150,150,,,1826465185,1582322712,1596188986,1821381517,0,SRX28842026,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36229,SRR33613674,SRX28842025,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 1,HFD 1,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-1-1.fq.gz HFD-1-2.fq.gz,fastq fastq,6598410300.0,21994701.0,HFD 1 1.fq.gz,0:150 1:150,A:1765905584;C:1529581410;G:1542056821;T:1760866485;N:0,150,150,,,1765905584,1529581410,1542056821,1760866485,0,SRX28842025,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36230,SRR33613675,SRX28842024,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 3,HFD10 3,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-3-1.fq.gz HFD10-3-2.fq.gz,fastq fastq,6609153300.0,22030511.0,HFD10 3 1.fq.gz,0:150 1:150,A:1780787716;C:1521027085;G:1532800826;T:1774537673;N:0,150,150,,,1780787716,1521027085,1532800826,1774537673,0,SRX28842024,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36231,SRR33613676,SRX28842023,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 2,HFD10 2,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-2-1.fq.gz HFD10-2-2.fq.gz,fastq fastq,6605145900.0,22017153.0,HFD10 2 1.fq.gz,0:150 1:150,A:1765731508;C:1533254667;G:1545960098;T:1760199627;N:0,150,150,,,1765731508,1533254667,1545960098,1760199627,0,SRX28842023,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36232,SRR33613677,SRX28842022,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 1,HFD10 1,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-1-1.fq.gz HFD10-1-2.fq.gz,fastq fastq,6780056700.0,22600189.0,HFD10 1 1.fq.gz,0:150 1:150,A:1819443100;C:1566081115;G:1580525465;T:1814007020;N:0,150,150,,,1819443100,1566081115,1580525465,1814007020,0,SRX28842022,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36233,SRR33613678,SRX28842021,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 3,NFD 3,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-3-1.fq.gz NFD-3-2.fq.gz,fastq fastq,6677775900.0,22259253.0,NFD 3 1.fq.gz,0:150 1:150,A:1794821611;C:1541478212;G:1552820105;T:1788655972;N:0,150,150,,,1794821611,1541478212,1552820105,1788655972,0,SRX28842021,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36234,SRR33613679,SRX28842020,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 2,NFD 2,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-2-1.fq.gz NFD-2-2.fq.gz,fastq fastq,6680197200.0,22267324.0,NFD 2 1.fq.gz,0:150 1:150,A:1810744167;C:1526383805;G:1539949310;T:1803119918;N:0,150,150,,,1810744167,1526383805,1539949310,1803119918,0,SRX28842020,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 36235,SRR33613680,SRX28842019,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 1,NFD 1,Total RNA was extracted digested with DNase I and mRNA enriched. post fragmentation cDNA synthesis and library construction the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-1-1.fq.gz NFD-1-2.fq.gz,fastq fastq,6587923800.0,21959746.0,NFD 1 1.fq.gz,0:150 1:150,A:1773646514;C:1516320091;G:1530275621;T:1767681574;N:0,150,150,,,1773646514,1516320091,1530275621,1767681574,0,SRX28842019,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure 38032,SRR1299129,SRX553173,SRS620472,SRP042111,PRJNA248169,Danio rerio strain:Wild Transcriptome or Gene expression,PRJNA248169,Other,Differential transcriptome map of Zebrafish Caudal fin,,,Seven days time post treatment,,7DZF,,breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:7 days time point|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Transcriptome or Gene expression,Danio rerioPRJNA248169 6,1,TruSeq adapter were used.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2000,2020Application ReadForward11Application ReadReverse102,SRP042111,,,7DZF-Danio_rerio_1R.fastq.bz2 7DZF-Danio_rerio_2R.fastq.bz2,fastq fastq,6699100124.0,33163862.0,7DZF,0:101 1:101,A:1884401354;C:1480292513;G:1459626078;T:1874377806;N:402373,101,101,,,1884401354,1480292513,1459626078,1874377806,402373,SRX553173,SRS620472,SRA166158,CCMB|CCMB,CCMB,2,0.92782,0.93012,0.08953,0.09016,0.72512,0.72693,0.50289,0.50368,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,India,2015-05-01,Adult,Adult,Fin,Surface Structure 38033,SRR1299128,SRX553172,SRS620471,SRP042111,PRJNA248169,Danio rerio strain:Wild Transcriptome or Gene expression,PRJNA248169,Other,Differential transcriptome map of Zebrafish Caudal fin,,,Three days time post treatment,,3DZF,,breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:3e days time point|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Transcriptome or Gene expression,Danio rerioPRJNA248169 5,1,TruSeq adapter were used.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2000,2020Application ReadForward11Application ReadReverse102,SRP042111,,,3DZF-Danio_rerio_1R.fastq.bz2 3DZF-Danio_rerio_2R.fastq.bz2,fastq fastq,6020171862.0,29802831.0,3DZF,0:101 1:101,A:1658934475;C:1364088259;G:1346830828;T:1649957848;N:360452,101,101,,,1658934475,1364088259,1346830828,1649957848,360452,SRX553172,SRS620471,SRA166158,CCMB|CCMB,CCMB,2,0.93196,0.93157,0.09004,0.09098,0.71906,0.72157,0.48732,0.4861,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,India,2014-05-27,Adult,Adult,Fin,Surface Structure 38034,SRR1299127,SRX553171,SRS620470,SRP042111,PRJNA248169,Danio rerio strain:Wild Transcriptome or Gene expression,PRJNA248169,Other,Differential transcriptome map of Zebrafish Caudal fin,,,Two days time post treatment,,2DZF,,breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:2 days time point|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Transcriptome or Gene expression,Danio rerioPRJNA248169 4,1,TruSeq adapter were used.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2000,2020Application ReadForward11Application ReadReverse102,SRP042111,,,2DZF-Danio_rerio_1R.fastq.bz2 2DZF-Danio_rerio_2R.fastq.bz2,fastq fastq,6925437084.0,34284342.0,2DZF,0:101 1:101,A:1948705184;C:1527739911;G:1509464867;T:1939201870;N:325252,101,101,,,1948705184,1527739911,1509464867,1939201870,325252,SRX553171,SRS620470,SRA166158,CCMB|CCMB,CCMB,2,0.92094,0.9222,0.08397,0.08467,0.73322,0.73499,0.49436,0.4896,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,India,2015-05-01,Adult,Adult,Fin,Surface Structure 38035,SRR1299126,SRX553170,SRS620469,SRP042111,PRJNA248169,Danio rerio strain:Wild Transcriptome or Gene expression,PRJNA248169,Other,Differential transcriptome map of Zebrafish Caudal fin,,,One day time post treatment,,1DZF,,breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:1 day time point|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Transcriptome or Gene expression,Danio rerioPRJNA248169 3,1,TruSeq adapter were used.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2000,2020Application ReadForward11Application ReadReverse102,SRP042111,,,1DZF-Danio_rerio_2R.fastq.bz2 1DZF-Danio_rerio_1R.fastq.bz2,fastq fastq,6719993388.0,33267294.0,1DZF,0:101 1:101,A:1893609768;C:1482166949;G:1462366567;T:1881531262;N:318842,101,101,,,1893609768,1482166949,1462366567,1881531262,318842,SRX553170,SRS620469,SRA166158,CCMB|CCMB,CCMB,2,0.92967,0.93015,0.08097,0.08125,0.74213,0.74324,0.47392,0.48207,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,India,2014-05-27,Adult,Adult,Fin,Surface Structure 38036,SRR1299125,SRX553169,SRS620468,SRP042111,PRJNA248169,Danio rerio strain:Wild Transcriptome or Gene expression,PRJNA248169,Other,Differential transcriptome map of Zebrafish Caudal fin,,,Half day time post treatment,,1 2DZF,,breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:Half day time point|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Transcriptome or Gene expression,Danio rerioPRJNA248169 2,1,TruSeq adapter were used.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2000,2020Application ReadForward11Application ReadReverse102,SRP042111,,,1-2DZF-Danio_rerio_2R.fastq.bz2 1-2DZF-Danio_rerio_1R.fastq.bz2,fastq fastq,6236131678.0,30871939.0,1 2DZF,0:101 1:101,A:1762641472;C:1370283862;G:1350562716;T:1752265045;N:378583,101,101,,,1762641472,1370283862,1350562716,1752265045,378583,SRX553169,SRS620468,SRA166158,CCMB|CCMB,CCMB,2,0.92407,0.92539,0.08396,0.08553,0.74456,0.74716,0.50446,0.51234,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,India,2014-05-27,Adult,Adult,Fin,Surface Structure 38037,SRR1299124,SRX553168,SRS620467,SRP042111,PRJNA248169,Danio rerio strain:Wild Transcriptome or Gene expression,PRJNA248169,Other,Differential transcriptome map of Zebrafish Caudal fin,,,Zero day time post treatment,,0DZF,,breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:Zero day time point|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Transcriptome or Gene expression,Danio rerioPRJNA248169,1,Truseq adapter were used.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2000,2020Application ReadForward11Application ReadReverse102,SRP042111,,,0DZF-Danio_rerio_1R.fastq.bz2 0DZF-Danio_rerio_2R.fastq.bz2,fastq fastq,6698814092.0,33162446.0,0DZF,0:101 1:101,A:1835032668;C:1528628655;G:1505878886;T:1828956105;N:317778,101,101,,,1835032668,1528628655,1505878886,1828956105,317778,SRX553168,SRS620467,SRA166158,CCMB|CCMB,CCMB,2,0.92038,0.92069,0.08892,0.08995,0.74511,0.74686,0.44111,0.43423,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,India,2015-05-01,Adult,Adult,Fin,Surface Structure 38116,SRR1551799,SRX681419,SRS685080,SRP045504,PRJNA258223,Danio rerio strain:TL Transcriptome or Gene expression,PRJNA258223,Other,Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos,,,,keratocytes from 4dpf embryos,keratocytes from 4dpf embryos,,breed:TL|strain:TL|age:4dpf|biomaterial provider:Julie Theriot Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:4dpf|BioSampleModel:Model organism or animal,,,,,,,,,transcriptome from 4dpf keratocytes replicate 3,4dpf 3,4dpf 3,RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen. Three biological replicates were collected for each developmental stage. Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre. The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate 1mM EDTA pH 9.2 at 95 degrees. To prepare cDNA first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming and second strand synthesis was performed with DNA Polymerase I NEB. Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter. Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer’s instructions to generate 40nt single ended reads.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,400Application ReadForward1,SRP045504,,,lane4_4dpf707.fastq,fastq,1001179200.0,25029480.0,4dpf 3,0:40,A:253770714;C:242097985;G:244642013;T:260557997;N:110491,40,,,,253770714,242097985,244642013,260557997,110491,SRX681419,SRS685080,SRA179326,Stanford University|Julie Theriot,Stanford University,1,0.90546,,0.2101,,0.75185,,0.49242,,40,,B,,usable mapping rate,illumina,early_illumina,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2015-04-07,Larval,Larval,Skin,Surface Structure 38117,SRR1551798,SRX681418,SRS685080,SRP045504,PRJNA258223,Danio rerio strain:TL Transcriptome or Gene expression,PRJNA258223,Other,Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos,,,,keratocytes from 4dpf embryos,keratocytes from 4dpf embryos,,breed:TL|strain:TL|age:4dpf|biomaterial provider:Julie Theriot Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:4dpf|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome from 4dpf keratocytes replicate 2,4dpf 2,4dpf 2,RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen. Three biological replicates were collected for each developmental stage. Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre. The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate 1mM EDTA pH 9.2 at 95 degrees. To prepare cDNA first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming and second strand synthesis was performed with DNA Polymerase I NEB. Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter. Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer’s instructions to generate 40nt single ended reads.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,400Application ReadForward1,SRP045504,,,lane7_4col.fastq,fastq,1700157430.0,44740985.0,4dpf 2,0:38,A:394789834;C:418821057;G:504852317;T:369111176;N:12583046,38,,,,394789834,418821057,504852317,369111176,12583046,SRX681418,SRS685080,SRA179326,Stanford University|Julie Theriot,Stanford University,1,0.68441,,0.12529,,0.8338,,0.45494,,38,,B,,usable mapping rate,illumina,early_illumina,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2014-08-14,Larval,Larval,Skin,Surface Structure 38118,SRR1551797,SRX681417,SRS685080,SRP045504,PRJNA258223,Danio rerio strain:TL Transcriptome or Gene expression,PRJNA258223,Other,Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos,,,,keratocytes from 4dpf embryos,keratocytes from 4dpf embryos,,breed:TL|strain:TL|age:4dpf|biomaterial provider:Julie Theriot Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:4dpf|BioSampleModel:Model organism or animal,,,,,,,,,4dpf keratocyte transcriptome replicate 1,4dpf 1,4dpf 1,RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen. Three biological replicates were collected for each developmental stage. Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre. The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate 1mM EDTA pH 9.2 at 95 degrees. To prepare cDNA first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming and second strand synthesis was performed with DNA Polymerase I NEB. Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter. Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer’s instructions to generate 40nt single ended reads.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,470Application ReadForward1,SRP045504,,,lane7_1_4dpf.fastq,fastq,762138229.0,16215707.0,4dpf 1,0:47,A:183899711;C:180347476;G:190086042;T:189460942;N:18344058,47,,,,183899711,180347476,190086042,189460942,18344058,SRX681417,SRS685080,SRA179326,Stanford University|Julie Theriot,Stanford University,1,0.85884,,0.2135,,0.80077,,0.50539,,47,,B,,usable mapping rate,illumina,early_illumina,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2014-08-15,Larval,Larval,Skin,Surface Structure 38119,SRR1551796,SRX681416,SRS685079,SRP045504,PRJNA258223,Danio rerio strain:TL Transcriptome or Gene expression,PRJNA258223,Other,Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos,,,,Transcriptome from 2dpf keratocytes,keratocytes from 2dpf embryos,,breed:TL|strain:TL|age:2dpf|biomaterial provider:Julie Theriot Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:2dpf|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome from 2dpf keratocytes replicate 3,2dpf 3,2dpf 3,RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen. Three biological replicates were collected for each developmental stage. Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre. The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate 1mM EDTA pH 9.2 at 95 degrees. To prepare cDNA first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming and second strand synthesis was performed with DNA Polymerase I NEB. Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter. Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer’s instructions to generate 40nt single ended reads.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,400Application ReadForward1,SRP045504,,,lane3_2dpf629.fastq,fastq,551787520.0,13794688.0,2dpf 3,0:40,A:138660463;C:132605577;G:134640312;T:145852714;N:28454,40,,,,138660463,132605577,134640312,145852714,28454,SRX681416,SRS685079,SRA179323,Stanford University|Julie Theriot,Stanford University,1,0.91375,,0.21598,,0.75317,,0.47881,,40,,B,,usable mapping rate,illumina,early_illumina,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2014-08-14,Hatching,Embryo,Skin,Surface Structure 38120,SRR1551795,SRX681415,SRS685079,SRP045504,PRJNA258223,Danio rerio strain:TL Transcriptome or Gene expression,PRJNA258223,Other,Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos,,,,Transcriptome from 2dpf keratocytes,keratocytes from 2dpf embryos,,breed:TL|strain:TL|age:2dpf|biomaterial provider:Julie Theriot Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:2dpf|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome from 2dpf keratocytes,2dpf 2,2dpf 2,RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen. Three biological replicates were collected for each developmental stage. Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre. The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate 1mM EDTA pH 9.2 at 95 degrees. To prepare cDNA first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming and second strand synthesis was performed with DNA Polymerase I NEB. Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter. Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer’s instructions to generate 40nt single ended reads.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,400Application ReadForward1,SRP045504,,,lane1_2dpf.fastq,fastq,796874112.0,22135392.0,2dpf 2,0:36,A:209956517;C:184659684;G:185142987;T:216055902;N:1059022,36,,,,209956517,184659684,185142987,216055902,1059022,SRX681415,SRS685079,SRA179323,Stanford University|Julie Theriot,Stanford University,1,0.89178,,0.17837,,0.7609,,0.49774,,36,,B,,usable mapping rate,illumina,early_illumina,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2015-04-07,Hatching,Embryo,Skin,Surface Structure 38121,SRR1551782,SRX681402,SRS685079,SRP045504,PRJNA258223,Danio rerio strain:TL Transcriptome or Gene expression,PRJNA258223,Other,Transcriptome profiling of keratocytes derived from 2dpf and 4dpf embryos,,,,Transcriptome from 2dpf keratocytes,keratocytes from 2dpf embryos,,breed:TL|strain:TL|age:2dpf|biomaterial provider:Julie Theriot Stanford University|sex:not collected|tissue:keratocytes skin|cell type:keratocyte|dev stage:2dpf|BioSampleModel:Model organism or animal,,,,,,,,,2dpf keratocytes replicate 1,2dpf 1,2dpf 1,RNA was extracted from approximately 1 x 105 keratocytes per sample using Trizol Invitrogen. Three biological replicates were collected for each developmental stage. Ribosomal RNA was depleted using the Ribo Zero magnetic kit Epicentre. The remaining mRNA was then fragmented with 8 minutes incubation in 50mM sodium carbonate/bicarbonate 1mM EDTA pH 9.2 at 95 degrees. To prepare cDNA first strand synthesis was performed with Superscript III Invitrogen using random hexamer priming and second strand synthesis was performed with DNA Polymerase I NEB. Illumina libraries were prepared from the cDNA in an automated fashion using the Illumina TruSeq sample prep kit with TruSeq adapters on a SPRIworks System I Beckman Coulter. Sequencing reactions were performed on an Illumina Genome Analyzer IIX according to manufacturer’s instructions to generate 40nt single ended reads.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,400Application ReadForward1,SRP045504,,,lane6_2dpf.fastq,fastq,647944118.0,17051161.0,2dpf 1,0:38,A:145735255;C:167786338;G:186677806;T:141598169;N:6146550,38,,,,145735255,167786338,186677806,141598169,6146550,SRX681402,SRS685079,SRA179323,Stanford University|Julie Theriot,Stanford University,1,0.7695,,0.15816,,0.81491,,0.44972,,38,,B,,usable mapping rate,illumina,early_illumina,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2014-08-14,Hatching,Embryo,Skin,Surface Structure 47613,SRR6760977,SRX3733411,SRS2990508,SRP133266,PRJNA434353,Transcriptome assemblies 10 vertebrate species,PRJNA434353,Other,2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human mouse cow tasmanian devil chicken duck zebra finch xenopus medaka and zebrafish 4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.,,,4 replicates,,Zebrafish,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome assemblies 10 vertebrate species,zebrafish replicate2,zebrafish replicate2,Zebrafish sample replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP133266,,,Sample_imb_butter_2014_04_30_zebrafish_B_R2.fastq.gz Sample_imb_butter_2014_04_30_zebrafish_B_R1.fastq.gz,fastq fastq,8021078014.0,39708307.0,Sample imb butter 2014 04 30 zebrafish B R2.fastq.gz,0:101 1:101,A:2198831905;C:1810184353;G:1779924959;T:2210094554;N:22042243,101,101,,,2198831905,1810184353,1779924959,2210094554,22042243,SRX3733411,SRS2990508,SRA660975,Institute of Molecular Biology|Quantitative Proteomics,Institute of Molecular Biology,2,0.94194,0.93911,0.07724,0.08406,0.75724,0.75558,0.47712,0.49049,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2019-02-15,Undetermined,Undetermined,Scale,Surface Structure 47614,SRR6760978,SRX3733410,SRS2990508,SRP133266,PRJNA434353,Transcriptome assemblies 10 vertebrate species,PRJNA434353,Other,2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human mouse cow tasmanian devil chicken duck zebra finch xenopus medaka and zebrafish 4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.,,,4 replicates,,Zebrafish,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome assemblies 10 vertebrate species,zebrafish replicate1,zebrafish replicate1,Zebrafish sample replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP133266,,,Sample_imb_butter_2014_04_29_zebrafish_A_R1.fastq.gz Sample_imb_butter_2014_04_29_zebrafish_A_R2.fastq.gz,fastq fastq,7117920864.0,35237232.0,Sample imb butter 2014 04 29 zebrafish A R2.fastq.gz,0:101 1:101,A:1980152632;C:1580333689;G:1558362064;T:1979596193;N:19476286,101,101,,,1980152632,1580333689,1558362064,1979596193,19476286,SRX3733410,SRS2990508,SRA660975,Institute of Molecular Biology|Quantitative Proteomics,Institute of Molecular Biology,2,0.9342,0.93044,0.08741,0.09642,0.75674,0.75497,0.49192,0.46492,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2018-02-22,Undetermined,Undetermined,Scale,Surface Structure 47615,SRR6760981,SRX3733407,SRS2990508,SRP133266,PRJNA434353,Transcriptome assemblies 10 vertebrate species,PRJNA434353,Other,2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human mouse cow tasmanian devil chicken duck zebra finch xenopus medaka and zebrafish 4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.,,,4 replicates,,Zebrafish,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome assemblies 10 vertebrate species,zebrafish replicate4,zebrafish replicate4,Zebrafish sample replicate 4,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP133266,,,Sample_imb_butter_2014_04_32_zebrafish_D_R1.fastq.gz Sample_imb_butter_2014_04_32_zebrafish_D_R2.fastq.gz,fastq fastq,8570683654.0,42429127.0,Sample imb butter 2014 04 32 zebrafish D R1.fastq.gz,0:101 1:101,A:2343151377;C:1943560489;G:1909682494;T:2350658549;N:23630745,101,101,,,2343151377,1943560489,1909682494,2350658549,23630745,SRX3733407,SRS2990508,SRA660975,Institute of Molecular Biology|Quantitative Proteomics,Institute of Molecular Biology,2,0.94036,0.94349,0.0838,0.0779,0.75538,0.75737,0.4881,0.48296,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2019-02-15,Undetermined,Undetermined,Scale,Surface Structure 47616,SRR6760982,SRX3733406,SRS2990508,SRP133266,PRJNA434353,Transcriptome assemblies 10 vertebrate species,PRJNA434353,Other,2 types of content: a Raw RNA seq files from cell lines of 10 vertebrate species human mouse cow tasmanian devil chicken duck zebra finch xenopus medaka and zebrafish 4 replicates per species. b Refined transcriptomes post combining with paired proteomics data and data curation.,,,4 replicates,,Zebrafish,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:missing|tissue:scale|cell line:BRF41|cell type:fibroblast|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome assemblies 10 vertebrate species,zebrafish replicate3,zebrafish replicate3,Zebrafish sample replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP133266,,,Sample_imb_butter_2014_04_31_zebrafish_C_R1.fastq.gz Sample_imb_butter_2014_04_31_zebrafish_C_R2.fastq.gz,fastq fastq,5889796416.0,29157408.0,Sample imb butter 2014 04 31 zebrafish C R1.fastq.gz,0:101 1:101,A:1629550499;C:1313886355;G:1293890602;T:1636478119;N:15990841,101,101,,,1629550499,1313886355,1293890602,1636478119,15990841,SRX3733406,SRS2990508,SRA660975,Institute of Molecular Biology|Quantitative Proteomics,Institute of Molecular Biology,2,0.93285,0.93628,0.09745,0.0871,0.7586,0.7611,0.47374,0.47763,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2018-02-22,Undetermined,Undetermined,Scale,Surface Structure 53654,SRR10010335,SRX6748603,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 11,35dpf nr5a1a nr5a1b double mutant 11,35dpf nr5a1a nr5a1b double mutant 11,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-11_combined_R1.fq.gz nr5a1ab35dmut-11_combined_R2.fq.gz,fastq fastq,5464020164.0,18092782.0,nr5a1ab35dmut 11 combined R1.fq.gz,0:151 1:151,A:1417197935;C:1238763491;G:1264099371;T:1543026312;N:933055,151,151,,,1417197935,1238763491,1264099371,1543026312,933055,SRX6748603,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82573,0.85627,0.0768,0.06148,0.75704,0.76017,0.49566,0.58424,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53655,SRR10010336,SRX6748602,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 7,35dpf nr5a1b mutant 7,35dpf nr5a1b mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-7_combined_R1.fq.gz nr5a1b35dmut-7_combined_R2.fq.gz,fastq fastq,2116406940.0,7007970.0,nr5a1b35dmut 7 combined R1.fq.gz,0:151 1:151,A:534677619;C:494553805;G:503529167;T:583343323;N:303026,151,151,,,534677619,494553805,503529167,583343323,303026,SRX6748602,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89953,0.9204,0.08475,0.06359,0.75069,0.75615,0.5203,0.5919,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53656,SRR10010337,SRX6748601,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 10,35dpf nr5a1a nr5a1b double mutant 10,35dpf nr5a1a nr5a1b double mutant 10,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-10_combined_R1.fq.gz nr5a1ab35dmut-10_combined_R2.fq.gz,fastq fastq,3016366034.0,9987967.0,nr5a1ab35dmut 10 combined R1.fq.gz,0:151 1:151,A:752733986;C:720025699;G:731849549;T:811247600;N:509200,151,151,,,752733986,720025699,731849549,811247600,509200,SRX6748601,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90615,0.91707,0.11046,0.07981,0.74651,0.74966,0.49676,0.60165,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53657,SRR10010338,SRX6748600,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 9,35dpf nr5a1a nr5a1b double mutant 9,35dpf nr5a1a nr5a1b double mutant 9,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-9_combined_R1.fq.gz nr5a1ab35dmut-9_combined_R2.fq.gz,fastq fastq,3569050194.0,11818047.0,nr5a1ab35dmut 9 combined R1.fq.gz,0:151 1:151,A:899915774;C:849832234;G:859458329;T:959242263;N:601594,151,151,,,899915774,849832234,859458329,959242263,601594,SRX6748600,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88978,0.9004,0.09772,0.07218,0.74799,0.74968,0.51174,0.6088,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53658,SRR10010339,SRX6748599,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 2,35dpf nr5a1a nr5a1b double mutant 2,35dpf nr5a1a nr5a1b double mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-2_combined_R1.fq.gz nr5a1ab35dmut-2_combined_R2.fq.gz,fastq fastq,2828323922.0,9365311.0,nr5a1ab35dmut 2 combined R1.fq.gz,0:151 1:151,A:691090279;C:673032167;G:684529355;T:779155559;N:516562,151,151,,,691090279,673032167,684529355,779155559,516562,SRX6748599,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8834,0.9068,0.11546,0.07455,0.75503,0.75615,0.51068,0.61929,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53659,SRR10010340,SRX6748598,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 1,35dpf nr5a1a nr5a1b double mutant 1,35dpf nr5a1a nr5a1b double mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-1_combined_R1.fq.gz nr5a1ab35dmut-1_combined_R2.fq.gz,fastq fastq,3461567790.0,11462145.0,nr5a1ab35dmut 1 combined R1.fq.gz,0:151 1:151,A:863912807;C:826288038;G:844009627;T:926819831;N:537487,151,151,,,863912807,826288038,844009627,926819831,537487,SRX6748598,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90732,0.91778,0.10103,0.06771,0.74026,0.74619,0.50631,0.59632,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53660,SRR10010341,SRX6748597,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 4,35dpf nr5a1b mutant 4,35dpf nr5a1b mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-4_combined_R1.fq.gz nr5a1b35dmut-4_combined_R2.fq.gz,fastq fastq,2823289582.0,9348641.0,nr5a1b35dmut 4 combined R1.fq.gz,0:151 1:151,A:692918043;C:667773087;G:683991041;T:778117057;N:490354,151,151,,,692918043,667773087,683991041,778117057,490354,SRX6748597,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89649,0.92027,0.09415,0.06385,0.75463,0.75883,0.48098,0.58128,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53661,SRR10010342,SRX6748596,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 14,35dpf nr5a1a nr5a1b double mutant 14,35dpf nr5a1a nr5a1b double mutant 14,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-14_combined_R1.fq.gz nr5a1ab35dmut-14_combined_R2.fq.gz,fastq fastq,2662720410.0,8816955.0,nr5a1ab35dmut 14 combined R1.fq.gz,0:151 1:151,A:665577500;C:635869780;G:647241076;T:713592928;N:439126,151,151,,,665577500,635869780,647241076,713592928,439126,SRX6748596,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90062,0.91305,0.1132,0.08326,0.75339,0.7555,0.49702,0.59781,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53662,SRR10010343,SRX6748595,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 7,21dpf nr5a1b mutant 7,21dpf nr5a1b mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-7_combined_R1.fq.gz nr5a1b21dmut-7_combined_R2.fq.gz,fastq fastq,3413772968.0,11303884.0,nr5a1b21dmut 7 combined R1.fq.gz,0:151 1:151,A:866277297;C:793136535;G:808490993;T:945306139;N:562004,151,151,,,866277297,793136535,808490993,945306139,562004,SRX6748595,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90038,0.9162,0.09303,0.06982,0.74637,0.74738,0.49835,0.58029,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53663,SRR10010344,SRX6748594,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 8,21dpf nr5a1b mutant 8,21dpf nr5a1b mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-8_combined_R1.fq.gz nr5a1b21dmut-8_combined_R2.fq.gz,fastq fastq,4840911718.0,16029509.0,nr5a1b21dmut 8 combined R1.fq.gz,0:151 1:151,A:1202544092;C:1166760381;G:1186843611;T:1283964664;N:798970,151,151,,,1202544092,1166760381,1186843611,1283964664,798970,SRX6748594,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.9056,0.91348,0.12201,0.08631,0.72845,0.73336,0.45147,0.53636,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53664,SRR10010345,SRX6748593,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 1,35dpf nr5a1b mutant 1,35dpf nr5a1b mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-1_combined_R1.fq.gz nr5a1b35dmut-1_combined_R2.fq.gz,fastq fastq,3080371310.0,10199905.0,nr5a1b35dmut 1 combined R1.fq.gz,0:151 1:151,A:749979603;C:751889973;G:770422909;T:807597821;N:481004,151,151,,,749979603,751889973,770422909,807597821,481004,SRX6748593,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91959,0.93095,0.11586,0.07628,0.76187,0.76562,0.49454,0.57785,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53665,SRR10010346,SRX6748592,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 2,35dpf nr5a1b mutant 2,35dpf nr5a1b mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-2_combined_R1.fq.gz nr5a1b35dmut-2_combined_R2.fq.gz,fastq fastq,3633938820.0,12032910.0,nr5a1b35dmut 2 combined R1.fq.gz,0:151 1:151,A:905316417;C:865468187;G:876812140;T:985720508;N:621568,151,151,,,905316417,865468187,876812140,985720508,621568,SRX6748592,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8972,0.91027,0.11437,0.07781,0.74099,0.74446,0.4981,0.60461,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53666,SRR10010347,SRX6748591,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 3,21dpf nr5a1b mutant 3,21dpf nr5a1b mutant 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-3_combined_R1.fq.gz nr5a1b21dmut-3_combined_R2.fq.gz,fastq fastq,2010998370.0,6658935.0,nr5a1b21dmut 3 combined R1.fq.gz,0:151 1:151,A:510741274;C:461058309;G:465853553;T:573016929;N:328305,151,151,,,510741274,461058309,465853553,573016929,328305,SRX6748591,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87512,0.8951,0.10891,0.08286,0.74759,0.74882,0.51531,0.57614,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53667,SRR10010348,SRX6748590,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 4,21dpf nr5a1b mutant 4,21dpf nr5a1b mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-4_combined_R1.fq.gz nr5a1b21dmut-4_combined_R2.fq.gz,fastq fastq,2838303512.0,9398356.0,nr5a1b21dmut 4 combined R1.fq.gz,0:151 1:151,A:696399092;C:677565241;G:694174849;T:769657171;N:507159,151,151,,,696399092,677565241,694174849,769657171,507159,SRX6748590,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88814,0.90692,0.10219,0.06896,0.74207,0.74186,0.47224,0.56972,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53668,SRR10010349,SRX6748589,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 7,21dpf nr5a1a nr5a1b double mutant 7,21dpf nr5a1a nr5a1b double mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-7_combined_R1.fq.gz nr5a1ab21dmut-7_combined_R2.fq.gz,fastq fastq,4301143494.0,14242197.0,nr5a1ab21dmut 7 combined R1.fq.gz,0:151 1:151,A:1037292424;C:1070782216;G:1085961255;T:1106426728;N:680871,151,151,,,1037292424,1070782216,1085961255,1106426728,680871,SRX6748589,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.92203,0.92848,0.14359,0.09024,0.76449,0.76852,0.45779,0.57313,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53669,SRR10010350,SRX6748588,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 8,21dpf nr5a1a nr5a1b double mutant 8,21dpf nr5a1a nr5a1b double mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-8_combined_R1.fq.gz nr5a1ab21dmut-8_combined_R2.fq.gz,fastq fastq,3463183188.0,11467494.0,nr5a1ab21dmut 8 combined R1.fq.gz,0:151 1:151,A:873871340;C:824464048;G:837882345;T:926409947;N:555508,151,151,,,873871340,824464048,837882345,926409947,555508,SRX6748588,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90477,0.9091,0.09733,0.07335,0.73768,0.74083,0.47337,0.54642,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53670,SRR10010351,SRX6748587,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 5,21dpf nr5a1a nr5a1b double mutant 5,21dpf nr5a1a nr5a1b double mutant 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-5_combined_R1.fq.gz nr5a1ab21dmut-5_combined_R2.fq.gz,fastq fastq,2105581146.0,6972123.0,nr5a1ab21dmut 5 combined R1.fq.gz,0:151 1:151,A:539297149;C:475252041;G:487324441;T:603338432;N:369083,151,151,,,539297149,475252041,487324441,603338432,369083,SRX6748587,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83588,0.86367,0.07285,0.05907,0.74795,0.74789,0.50471,0.57306,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53671,SRR10010352,SRX6748586,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 6,21dpf nr5a1a nr5a1b double mutant 6,21dpf nr5a1a nr5a1b double mutant 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-6_combined_R1.fq.gz nr5a1ab21dmut-6_combined_R2.fq.gz,fastq fastq,2160567192.0,7154196.0,nr5a1ab21dmut 6 combined R1.fq.gz,0:151 1:151,A:549656125;C:499912370;G:508304192;T:602348154;N:346351,151,151,,,549656125,499912370,508304192,602348154,346351,SRX6748586,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88824,0.90531,0.11055,0.0875,0.70554,0.70859,0.48379,0.54732,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53672,SRR10010353,SRX6748585,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 3,21dpf nr5a1a nr5a1b double mutant 3,21dpf nr5a1a nr5a1b double mutant 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-3_combined_R1.fq.gz nr5a1ab21dmut-3_combined_R2.fq.gz,fastq fastq,1850334974.0,6126937.0,nr5a1ab21dmut 3 combined R1.fq.gz,0:151 1:151,A:470148849;C:425157376;G:428614793;T:526090487;N:323469,151,151,,,470148849,425157376,428614793,526090487,323469,SRX6748585,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.86747,0.88781,0.13442,0.09954,0.7514,0.75091,0.4841,0.58575,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53673,SRR10010354,SRX6748584,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 4,21dpf nr5a1a nr5a1b double mutant 4,21dpf nr5a1a nr5a1b double mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-4_combined_R1.fq.gz nr5a1ab21dmut-4_combined_R2.fq.gz,fastq fastq,4174074276.0,13821438.0,nr5a1ab21dmut 4 combined R1.fq.gz,0:151 1:151,A:1056833741;C:976094817;G:994472897;T:1145958470;N:714351,151,151,,,1056833741,976094817,994472897,1145958470,714351,SRX6748584,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89035,0.89997,0.10027,0.07415,0.7264,0.72829,0.48572,0.57325,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53674,SRR10010355,SRX6748583,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 1,21dpf nr5a1a nr5a1b double mutant 1,21dpf nr5a1a nr5a1b double mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-1_combined_R1.fq.gz nr5a1ab21dmut-1_combined_R2.fq.gz,fastq fastq,2417465606.0,8004853.0,nr5a1ab21dmut 1 combined R1.fq.gz,0:151 1:151,A:581742121;C:593490135;G:604923946;T:636944229;N:365175,151,151,,,581742121,593490135,604923946,636944229,365175,SRX6748583,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91256,0.92768,0.16171,0.10389,0.7525,0.75645,0.41647,0.53108,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53675,SRR10010356,SRX6748582,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 2,21dpf nr5a1a nr5a1b double mutant 2,21dpf nr5a1a nr5a1b double mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-2_combined_R1.fq.gz nr5a1ab21dmut-2_combined_R2.fq.gz,fastq fastq,3285689634.0,10879767.0,nr5a1ab21dmut 2 combined R1.fq.gz,0:151 1:151,A:808126419;C:794634133;G:804858824;T:877512631;N:557627,151,151,,,808126419,794634133,804858824,877512631,557627,SRX6748582,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90624,0.91945,0.14324,0.09474,0.74556,0.74901,0.46293,0.60218,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure 53676,SRR10010357,SRX6748581,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 7,35dpf nr5a1a mutant 7,35dpf nr5a1a mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-7_combined_R1.fq.gz nr5a1a35dmut-7_combined_R2.fq.gz,fastq fastq,2969897294.0,9834097.0,nr5a1a35dmut 7 combined R1.fq.gz,0:151 1:151,A:752593200;C:695994377;G:707935979;T:812884925;N:488813,151,151,,,752593200,695994377,707935979,812884925,488813,SRX6748581,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89218,0.906,0.09342,0.07022,0.73795,0.73898,0.51281,0.5911,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53677,SRR10010358,SRX6748580,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a / ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 8,35dpf nr5a1a mutant 8,35dpf nr5a1a mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-8_combined_R1.fq.gz nr5a1a35dmut-8_combined_R2.fq.gz,fastq fastq,6225038118.0,20612709.0,nr5a1a35dmut 8 combined R1.fq.gz,0:151 1:151,A:1559098665;C:1505493891;G:1534176065;T:1625255981;N:1013516,151,151,,,1559098665,1505493891,1534176065,1625255981,1013516,SRX6748580,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90023,0.90282,0.09369,0.06592,0.73525,0.73854,0.50906,0.59368,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53678,SRR10010359,SRX6748579,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 2,35dpf wild type 2,35dpf wild type 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-2_combined_R1.fq.gz nr5a1_35day_WT-2_combined_R2.fq.gz,fastq fastq,4142275186.0,13716143.0,nr5a1 35day WT 2 combined R1.fq.gz,0:151 1:151,A:1055251193;C:967398418;G:984879234;T:1134062187;N:684154,151,151,,,1055251193,967398418,984879234,1134062187,684154,SRX6748579,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89791,0.91014,0.09157,0.06806,0.73927,0.74067,0.515,0.58656,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53679,SRR10010360,SRX6748578,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 3,35dpf wild type 3,35dpf wild type 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-3_combined_R2.fq.gz nr5a1_35day_WT-3_combined_R1.fq.gz,fastq fastq,2471376532.0,8183366.0,nr5a1 35day WT 3 combined R1.fq.gz,0:151 1:151,A:615088670;C:576161730;G:582945558;T:696743565;N:437009,151,151,,,615088670,576161730,582945558,696743565,437009,SRX6748578,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87753,0.90284,0.1111,0.07857,0.72563,0.72794,0.50927,0.59766,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure 53680,SRR10010361,SRX6748577,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 4,35dpf wild type 4,35dpf wild type 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-4_combined_R1.fq.gz nr5a1_35day_WT-4_combined_R2.fq.gz,fastq fastq,2116363754.0,7007827.0,nr5a1 35day WT 4 combined R1.fq.gz,0:151 1:151,A:517886726;C:489788898;G:502421580;T:605882187;N:384363,151,151,,,517886726,489788898,502421580,605882187,384363,SRX6748577,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87446,0.91282,0.08961,0.06167,0.75325,0.75363,0.50444,0.58991,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure