rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
125,DRR189379,DRX179844,DRS200410,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of EMX3  /  larval zebrafish 5dpf 3,SAMD00182222,,sample name:Emx3     Larva body 3|genotype:Emx3 / |tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182222,DRX179844,Emx3 /  Larva body 3,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182222,,,,1759409208.0,48872478.0,DRR189379,0:36,A:401147348;C:424523813;G:426350919;T:507310828;N:76300,36,,,,401147348,424523813,426350919,507310828,76300,DRX179844,DRS200410,DRA008857,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.90975,,0.11439,,0.66076,,0.47775,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure
126,DRR189378,DRX179843,DRS200409,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of EMX3  /  larval zebrafish 5dpf 2,SAMD00182221,,sample name:Emx3     Larva body 2|genotype:Emx3 / |tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182221,DRX179843,Emx3 /  Larva body 2,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182221,,,,1318201020.0,36616695.0,DRR189378,0:36,A:297850068;C:316786585;G:323717530;T:379789606;N:57231,36,,,,297850068,316786585,323717530,379789606,57231,DRX179843,DRS200409,DRA008857,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.9116,,0.11269,,0.65837,,0.46733,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure
127,DRR189377,DRX179842,DRS200408,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of EMX3  /  larval zebrafish 5dpf 1,SAMD00182220,,sample name:Emx3     Larva body 1|genotype:Emx3 / |tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182220,DRX179842,Emx3 /  Larva body 1,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182220,,,,812483964.0,22568999.0,DRR189377,0:36,A:185173338;C:197790160;G:197482964;T:232000884;N:36618,36,,,,185173338,197790160,197482964,232000884,36618,DRX179842,DRS200408,DRA008857,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.91107,,0.1171,,0.65981,,0.47458,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure
128,DRR189376,DRX179841,DRS200449,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of wild type larval zebrafish 5dpf 3,SAMD00182219,,sample name:WT Larva body 3|genotype:wild type|tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182219,DRX179841,WT Larva body 3,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182219,,,,4030038144.0,111945504.0,DRR189376,0:36,A:943709984;C:971756680;G:977594500;T:1136798448;N:178532,36,,,,943709984,971756680,977594500,1136798448,178532,DRX179841,DRS200449,DRA008856,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.89574,,0.12331,,0.65831,,0.48096,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure
129,DRR189375,DRX179840,DRS200448,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of wild type larval zebrafish 5dpf 2,SAMD00182218,,sample name:WT Larva body 2|genotype:wild type|tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182218,DRX179840,WT Larva body 2,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182218,,,,1991670804.0,55324189.0,DRR189375,0:36,A:454367176;C:479012055;G:488407231;T:569793674;N:90668,36,,,,454367176,479012055,488407231,569793674,90668,DRX179840,DRS200448,DRA008856,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.90911,,0.12455,,0.65494,,0.47971,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure
130,DRR189374,DRX179839,DRS200447,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,,Whole body of wild type larval zebrafish 5dpf 1,SAMD00182217,,sample name:WT Larva body 1|genotype:wild type|tissue:whole body,,,,,,,,,Illumina HiSeq 3000 sequencing of SAMD00182217,DRX179839,WT Larva body 1,1,SureSelect Strand Specific RNA Library Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 3000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 3000 sequencing of SAMD00182217,,,,1018340100.0,28287225.0,DRR189374,0:36,A:233370050;C:244140659;G:247795084;T:292989542;N:44765,36,,,,233370050,244140659,247795084,292989542,44765,DRX179839,DRS200447,DRA008856,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),1,0.91078,,0.12578,,0.6524,,0.48016,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2021-08-08,Larval,Larval,Trunk,Surface Structure
33125,SRR29811637,SRX25310837,SRS21984646,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,long term LAP leachate 3,LLAP3,,breed:AB|age:120 hours 9|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1471A,LR240511O 1471A,mRNA seq of Danio rerio  relication 3 of LLAP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,LR3.R2.fq.gz LR3.R1.fq.gz,fastq fastq,7498719600.0,24995732.0,LR3.R1.fq.gz,0:150 1:150,A:1840764729;C:1818513353;G:1983502172;T:1855787349;N:151997,150,150,,,1840764729,1818513353,1983502172,1855787349,151997,SRX25310837,SRS21984646,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.9136,0.89307,0.07212,0.07059,0.6646,0.66661,0.47616,0.47357,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33126,SRR29811638,SRX25310836,SRS21984651,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,long term LAP leachate 2,LLAP2,,breed:AB|age:120 hours 8|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1470A,LR240511O 1470A,mRNA seq of Danio rerio  relication 2 of LLAP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,LR2.R1.fq.gz LR2.R2.fq.gz,fastq fastq,6564182700.0,21880609.0,LR2.R1.fq.gz,0:150 1:150,A:1746763337;C:1207489067;G:1880015332;T:1729775508;N:139456,150,150,,,1746763337,1207489067,1880015332,1729775508,139456,SRX25310836,SRS21984651,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.88206,0.77219,0.15745,0.13819,0.7024,0.70473,0.50824,0.50933,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33127,SRR29811639,SRX25310835,SRS21984645,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,long term LAP leachate 1,LLAP1,,breed:AB|age:120 hours 7|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1469A,LR240511O 1469A,mRNA seq of Danio rerio  relication 1 of LLAP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,LR1.R2.fq.gz LR1.R1.fq.gz,fastq fastq,7872238200.0,26240794.0,LR1.R1.fq.gz,0:150 1:150,A:2072343735;C:1788675601;G:1954568005;T:2056488656;N:162203,150,150,,,2072343735,1788675601,1954568005,2056488656,162203,SRX25310835,SRS21984645,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.89866,0.88369,0.11023,0.10907,0.67491,0.67683,0.4824,0.48524,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33128,SRR29811640,SRX25310834,SRS21984644,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,long term TWP leachate 3,LTWP3,,breed:AB|age:120 hours 6|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1468A,LR240511O 1468A,mRNA seq of Danio rerio  relication 3 of LTWP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,MR3.R1.fq.gz MR3.R2.fq.gz,fastq fastq,6425482800.0,21418276.0,MR3.R1.fq.gz,0:150 1:150,A:1590904460;C:1556914666;G:1685823262;T:1591710906;N:129506,150,150,,,1590904460,1556914666,1685823262,1591710906,129506,SRX25310834,SRS21984644,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.91895,0.90759,0.07582,0.07534,0.67446,0.67485,0.46453,0.46627,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33129,SRR29811641,SRX25310833,SRS21984643,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,long term TWP leachate 2,LTWP2,,breed:AB|age:120 hours 5|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1467A,LR240511O 1467A,mRNA seq of Danio rerio  relication 2 of LTWP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,MR2.R1.fq.gz MR2.R2.fq.gz,fastq fastq,6383533200.0,21278444.0,MR2.R1.fq.gz,0:150 1:150,A:1717910384;C:1380510195;G:1592327928;T:1692660754;N:123939,150,150,,,1717910384,1380510195,1592327928,1692660754,123939,SRX25310833,SRS21984643,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.88766,0.86214,0.12652,0.12334,0.68631,0.68952,0.48978,0.48943,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33130,SRR29811642,SRX25310832,SRS21984642,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,long term TWP leachate 1,LTWP1,,breed:AB|age:120 hours 4|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1466A,LR240511O 1466A,mRNA seq of Danio rerio  relication 1 of LTWP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,MR1.R1.fq.gz MR1.R2.fq.gz,fastq fastq,7846995900.0,26156653.0,MR1.R1.fq.gz,0:150 1:150,A:1992383226;C:1863588260;G:1991793371;T:1999072963;N:158080,150,150,,,1992383226,1863588260,1991793371,1999072963,158080,SRX25310832,SRS21984642,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.9046,0.89444,0.09962,0.09876,0.67744,0.67864,0.47577,0.47304,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33131,SRR29811643,SRX25310831,SRS21984641,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,control 3,CON3,,breed:AB|age:120 hours 3|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1465A,LR240511O 1465A,mRNA seq of Danio rerio  relication 3 of CON,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,CR3.R1.fq.gz CR3.R2.fq.gz,fastq fastq,7149110700.0,23830369.0,CR3.R1.fq.gz,0:150 1:150,A:1820443769;C:1698664767;G:1803666123;T:1826190403;N:145638,150,150,,,1820443769,1698664767,1803666123,1826190403,145638,SRX25310831,SRS21984641,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.90756,0.89873,0.09562,0.09425,0.67146,0.67359,0.45981,0.46247,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33132,SRR29811644,SRX25310830,SRS21984640,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,control 2,CON2,,breed:AB|age:120 hours 2|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1464A,LR240511O 1464A,mRNA seq of Danio rerio  relication 2 of CON,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,CR2.R1.fq.gz CR2.R2.fq.gz,fastq fastq,6812733600.0,22709112.0,CR2.R1.fq.gz,0:150 1:150,A:1792158799;C:1525869738;G:1711794485;T:1782779121;N:131457,150,150,,,1792158799,1525869738,1711794485,1782779121,131457,SRX25310830,SRS21984640,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.89909,0.8788,0.10828,0.10576,0.68335,0.68603,0.46708,0.47979,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
33133,SRR29811645,SRX25310829,SRS21984639,SRP519625,PRJNA1132896,Zebrafish larvae exposed by tire wear particles leachate and latex paticles leachate,PRJNA1132896,Other,This study focuses on investigating the effects of exposure to tire wear particles leachate and latex particles leachate on zebrafish embryos. Specifically  we aim to understand how these common environmental pollutants impact the development and health of aquatic organisms  with an emphasis on physiological and developmental changes in zebrafish embryos. Our research provides valuable insights into the potential environmental risks associated with tire and latex particle pollutants  contributing to the broader field of ecotoxicology and environmental safety.,,,,control 1,CON1,,breed:AB|age:120 hours 1|collection date:2024 04 28|geo loc name:China: Qingdao|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: whole body of larvae,LR240511O 1463A,LR240511O 1463A,mRNA seq of Danio rerio  relication 1 of CON,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP519625,,,CR1.R1.fq.gz CR1.R2.fq.gz,fastq fastq,6474517800.0,21581726.0,CR1.R1.fq.gz,0:150 1:150,A:1625286788;C:1547447403;G:1668730956;T:1632920740;N:131913,150,150,,,1625286788,1547447403,1668730956,1632920740,131913,SRX25310829,SRS21984639,SRA1918576,Qingdao University of Science and Technology|College of Marine Science and biological engineeri,Qingdao University of Science and Technology,2,0.9112,0.89637,0.08986,0.08847,0.67338,0.67363,0.46785,0.46816,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-07-12,Larval,Larval,Trunk,Surface Structure
36227,SRR33613672,SRX28842027,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 3,HFD 3,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-3-1.fq.gz HFD-3-2.fq.gz,fastq fastq,6810755100.0,22702517.0,HFD 3 1.fq.gz,0:150 1:150,A:1804127778;C:1596175018;G:1609090701;T:1801361603;N:0,150,150,,,1804127778,1596175018,1609090701,1801361603,0,SRX28842027,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36228,SRR33613673,SRX28842026,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 2,HFD 2,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-2-1.fq.gz HFD-2-2.fq.gz,fastq fastq,6826358400.0,22754528.0,HFD 2 1.fq.gz,0:150 1:150,A:1826465185;C:1582322712;G:1596188986;T:1821381517;N:0,150,150,,,1826465185,1582322712,1596188986,1821381517,0,SRX28842026,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36229,SRR33613674,SRX28842025,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 1,HFD 1,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-1-1.fq.gz HFD-1-2.fq.gz,fastq fastq,6598410300.0,21994701.0,HFD 1 1.fq.gz,0:150 1:150,A:1765905584;C:1529581410;G:1542056821;T:1760866485;N:0,150,150,,,1765905584,1529581410,1542056821,1760866485,0,SRX28842025,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36230,SRR33613675,SRX28842024,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 3,HFD10 3,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-3-1.fq.gz HFD10-3-2.fq.gz,fastq fastq,6609153300.0,22030511.0,HFD10 3 1.fq.gz,0:150 1:150,A:1780787716;C:1521027085;G:1532800826;T:1774537673;N:0,150,150,,,1780787716,1521027085,1532800826,1774537673,0,SRX28842024,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36231,SRR33613676,SRX28842023,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 2,HFD10 2,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-2-1.fq.gz HFD10-2-2.fq.gz,fastq fastq,6605145900.0,22017153.0,HFD10 2 1.fq.gz,0:150 1:150,A:1765731508;C:1533254667;G:1545960098;T:1760199627;N:0,150,150,,,1765731508,1533254667,1545960098,1760199627,0,SRX28842023,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36232,SRR33613677,SRX28842022,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 1,HFD10 1,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-1-1.fq.gz HFD10-1-2.fq.gz,fastq fastq,6780056700.0,22600189.0,HFD10 1 1.fq.gz,0:150 1:150,A:1819443100;C:1566081115;G:1580525465;T:1814007020;N:0,150,150,,,1819443100,1566081115,1580525465,1814007020,0,SRX28842022,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36233,SRR33613678,SRX28842021,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 3,NFD 3,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-3-1.fq.gz NFD-3-2.fq.gz,fastq fastq,6677775900.0,22259253.0,NFD 3 1.fq.gz,0:150 1:150,A:1794821611;C:1541478212;G:1552820105;T:1788655972;N:0,150,150,,,1794821611,1541478212,1552820105,1788655972,0,SRX28842021,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36234,SRR33613679,SRX28842020,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 2,NFD 2,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-2-1.fq.gz NFD-2-2.fq.gz,fastq fastq,6680197200.0,22267324.0,NFD 2 1.fq.gz,0:150 1:150,A:1810744167;C:1526383805;G:1539949310;T:1803119918;N:0,150,150,,,1810744167,1526383805,1539949310,1803119918,0,SRX28842020,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36235,SRR33613680,SRX28842019,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 1,NFD 1,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-1-1.fq.gz NFD-1-2.fq.gz,fastq fastq,6587923800.0,21959746.0,NFD 1 1.fq.gz,0:150 1:150,A:1773646514;C:1516320091;G:1530275621;T:1767681574;N:0,150,150,,,1773646514,1516320091,1530275621,1767681574,0,SRX28842019,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection &amp; Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
53654,SRR10010335,SRX6748603,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 11,35dpf nr5a1a nr5a1b double mutant 11,35dpf nr5a1a nr5a1b double mutant 11,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-11_combined_R1.fq.gz nr5a1ab35dmut-11_combined_R2.fq.gz,fastq fastq,5464020164.0,18092782.0,nr5a1ab35dmut 11 combined R1.fq.gz,0:151 1:151,A:1417197935;C:1238763491;G:1264099371;T:1543026312;N:933055,151,151,,,1417197935,1238763491,1264099371,1543026312,933055,SRX6748603,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82573,0.85627,0.0768,0.06148,0.75704,0.76017,0.49566,0.58424,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53655,SRR10010336,SRX6748602,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 7,35dpf nr5a1b mutant 7,35dpf nr5a1b mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-7_combined_R1.fq.gz nr5a1b35dmut-7_combined_R2.fq.gz,fastq fastq,2116406940.0,7007970.0,nr5a1b35dmut 7 combined R1.fq.gz,0:151 1:151,A:534677619;C:494553805;G:503529167;T:583343323;N:303026,151,151,,,534677619,494553805,503529167,583343323,303026,SRX6748602,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89953,0.9204,0.08475,0.06359,0.75069,0.75615,0.5203,0.5919,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53656,SRR10010337,SRX6748601,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 10,35dpf nr5a1a nr5a1b double mutant 10,35dpf nr5a1a nr5a1b double mutant 10,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-10_combined_R1.fq.gz nr5a1ab35dmut-10_combined_R2.fq.gz,fastq fastq,3016366034.0,9987967.0,nr5a1ab35dmut 10 combined R1.fq.gz,0:151 1:151,A:752733986;C:720025699;G:731849549;T:811247600;N:509200,151,151,,,752733986,720025699,731849549,811247600,509200,SRX6748601,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90615,0.91707,0.11046,0.07981,0.74651,0.74966,0.49676,0.60165,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53657,SRR10010338,SRX6748600,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 9,35dpf nr5a1a nr5a1b double mutant 9,35dpf nr5a1a nr5a1b double mutant 9,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-9_combined_R1.fq.gz nr5a1ab35dmut-9_combined_R2.fq.gz,fastq fastq,3569050194.0,11818047.0,nr5a1ab35dmut 9 combined R1.fq.gz,0:151 1:151,A:899915774;C:849832234;G:859458329;T:959242263;N:601594,151,151,,,899915774,849832234,859458329,959242263,601594,SRX6748600,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88978,0.9004,0.09772,0.07218,0.74799,0.74968,0.51174,0.6088,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53658,SRR10010339,SRX6748599,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 2,35dpf nr5a1a nr5a1b double mutant 2,35dpf nr5a1a nr5a1b double mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-2_combined_R1.fq.gz nr5a1ab35dmut-2_combined_R2.fq.gz,fastq fastq,2828323922.0,9365311.0,nr5a1ab35dmut 2 combined R1.fq.gz,0:151 1:151,A:691090279;C:673032167;G:684529355;T:779155559;N:516562,151,151,,,691090279,673032167,684529355,779155559,516562,SRX6748599,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8834,0.9068,0.11546,0.07455,0.75503,0.75615,0.51068,0.61929,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53659,SRR10010340,SRX6748598,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 1,35dpf nr5a1a nr5a1b double mutant 1,35dpf nr5a1a nr5a1b double mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-1_combined_R1.fq.gz nr5a1ab35dmut-1_combined_R2.fq.gz,fastq fastq,3461567790.0,11462145.0,nr5a1ab35dmut 1 combined R1.fq.gz,0:151 1:151,A:863912807;C:826288038;G:844009627;T:926819831;N:537487,151,151,,,863912807,826288038,844009627,926819831,537487,SRX6748598,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90732,0.91778,0.10103,0.06771,0.74026,0.74619,0.50631,0.59632,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53660,SRR10010341,SRX6748597,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 4,35dpf nr5a1b mutant 4,35dpf nr5a1b mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-4_combined_R1.fq.gz nr5a1b35dmut-4_combined_R2.fq.gz,fastq fastq,2823289582.0,9348641.0,nr5a1b35dmut 4 combined R1.fq.gz,0:151 1:151,A:692918043;C:667773087;G:683991041;T:778117057;N:490354,151,151,,,692918043,667773087,683991041,778117057,490354,SRX6748597,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89649,0.92027,0.09415,0.06385,0.75463,0.75883,0.48098,0.58128,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53661,SRR10010342,SRX6748596,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 14,35dpf nr5a1a nr5a1b double mutant 14,35dpf nr5a1a nr5a1b double mutant 14,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-14_combined_R1.fq.gz nr5a1ab35dmut-14_combined_R2.fq.gz,fastq fastq,2662720410.0,8816955.0,nr5a1ab35dmut 14 combined R1.fq.gz,0:151 1:151,A:665577500;C:635869780;G:647241076;T:713592928;N:439126,151,151,,,665577500,635869780,647241076,713592928,439126,SRX6748596,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90062,0.91305,0.1132,0.08326,0.75339,0.7555,0.49702,0.59781,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53662,SRR10010343,SRX6748595,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 7,21dpf nr5a1b mutant 7,21dpf nr5a1b mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-7_combined_R1.fq.gz nr5a1b21dmut-7_combined_R2.fq.gz,fastq fastq,3413772968.0,11303884.0,nr5a1b21dmut 7 combined R1.fq.gz,0:151 1:151,A:866277297;C:793136535;G:808490993;T:945306139;N:562004,151,151,,,866277297,793136535,808490993,945306139,562004,SRX6748595,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90038,0.9162,0.09303,0.06982,0.74637,0.74738,0.49835,0.58029,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53663,SRR10010344,SRX6748594,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 8,21dpf nr5a1b mutant 8,21dpf nr5a1b mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-8_combined_R1.fq.gz nr5a1b21dmut-8_combined_R2.fq.gz,fastq fastq,4840911718.0,16029509.0,nr5a1b21dmut 8 combined R1.fq.gz,0:151 1:151,A:1202544092;C:1166760381;G:1186843611;T:1283964664;N:798970,151,151,,,1202544092,1166760381,1186843611,1283964664,798970,SRX6748594,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.9056,0.91348,0.12201,0.08631,0.72845,0.73336,0.45147,0.53636,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53664,SRR10010345,SRX6748593,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 1,35dpf nr5a1b mutant 1,35dpf nr5a1b mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-1_combined_R1.fq.gz nr5a1b35dmut-1_combined_R2.fq.gz,fastq fastq,3080371310.0,10199905.0,nr5a1b35dmut 1 combined R1.fq.gz,0:151 1:151,A:749979603;C:751889973;G:770422909;T:807597821;N:481004,151,151,,,749979603,751889973,770422909,807597821,481004,SRX6748593,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91959,0.93095,0.11586,0.07628,0.76187,0.76562,0.49454,0.57785,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53665,SRR10010346,SRX6748592,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 2,35dpf nr5a1b mutant 2,35dpf nr5a1b mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-2_combined_R1.fq.gz nr5a1b35dmut-2_combined_R2.fq.gz,fastq fastq,3633938820.0,12032910.0,nr5a1b35dmut 2 combined R1.fq.gz,0:151 1:151,A:905316417;C:865468187;G:876812140;T:985720508;N:621568,151,151,,,905316417,865468187,876812140,985720508,621568,SRX6748592,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8972,0.91027,0.11437,0.07781,0.74099,0.74446,0.4981,0.60461,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53666,SRR10010347,SRX6748591,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 3,21dpf nr5a1b mutant 3,21dpf nr5a1b mutant 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-3_combined_R1.fq.gz nr5a1b21dmut-3_combined_R2.fq.gz,fastq fastq,2010998370.0,6658935.0,nr5a1b21dmut 3 combined R1.fq.gz,0:151 1:151,A:510741274;C:461058309;G:465853553;T:573016929;N:328305,151,151,,,510741274,461058309,465853553,573016929,328305,SRX6748591,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87512,0.8951,0.10891,0.08286,0.74759,0.74882,0.51531,0.57614,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53667,SRR10010348,SRX6748590,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 4,21dpf nr5a1b mutant 4,21dpf nr5a1b mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-4_combined_R1.fq.gz nr5a1b21dmut-4_combined_R2.fq.gz,fastq fastq,2838303512.0,9398356.0,nr5a1b21dmut 4 combined R1.fq.gz,0:151 1:151,A:696399092;C:677565241;G:694174849;T:769657171;N:507159,151,151,,,696399092,677565241,694174849,769657171,507159,SRX6748590,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88814,0.90692,0.10219,0.06896,0.74207,0.74186,0.47224,0.56972,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53668,SRR10010349,SRX6748589,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 7,21dpf nr5a1a nr5a1b double mutant 7,21dpf nr5a1a nr5a1b double mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-7_combined_R1.fq.gz nr5a1ab21dmut-7_combined_R2.fq.gz,fastq fastq,4301143494.0,14242197.0,nr5a1ab21dmut 7 combined R1.fq.gz,0:151 1:151,A:1037292424;C:1070782216;G:1085961255;T:1106426728;N:680871,151,151,,,1037292424,1070782216,1085961255,1106426728,680871,SRX6748589,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.92203,0.92848,0.14359,0.09024,0.76449,0.76852,0.45779,0.57313,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53669,SRR10010350,SRX6748588,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 8,21dpf nr5a1a nr5a1b double mutant 8,21dpf nr5a1a nr5a1b double mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-8_combined_R1.fq.gz nr5a1ab21dmut-8_combined_R2.fq.gz,fastq fastq,3463183188.0,11467494.0,nr5a1ab21dmut 8 combined R1.fq.gz,0:151 1:151,A:873871340;C:824464048;G:837882345;T:926409947;N:555508,151,151,,,873871340,824464048,837882345,926409947,555508,SRX6748588,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90477,0.9091,0.09733,0.07335,0.73768,0.74083,0.47337,0.54642,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53670,SRR10010351,SRX6748587,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 5,21dpf nr5a1a nr5a1b double mutant 5,21dpf nr5a1a nr5a1b double mutant 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-5_combined_R1.fq.gz nr5a1ab21dmut-5_combined_R2.fq.gz,fastq fastq,2105581146.0,6972123.0,nr5a1ab21dmut 5 combined R1.fq.gz,0:151 1:151,A:539297149;C:475252041;G:487324441;T:603338432;N:369083,151,151,,,539297149,475252041,487324441,603338432,369083,SRX6748587,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83588,0.86367,0.07285,0.05907,0.74795,0.74789,0.50471,0.57306,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53671,SRR10010352,SRX6748586,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 6,21dpf nr5a1a nr5a1b double mutant 6,21dpf nr5a1a nr5a1b double mutant 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-6_combined_R1.fq.gz nr5a1ab21dmut-6_combined_R2.fq.gz,fastq fastq,2160567192.0,7154196.0,nr5a1ab21dmut 6 combined R1.fq.gz,0:151 1:151,A:549656125;C:499912370;G:508304192;T:602348154;N:346351,151,151,,,549656125,499912370,508304192,602348154,346351,SRX6748586,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88824,0.90531,0.11055,0.0875,0.70554,0.70859,0.48379,0.54732,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53672,SRR10010353,SRX6748585,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 3,21dpf nr5a1a nr5a1b double mutant 3,21dpf nr5a1a nr5a1b double mutant 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-3_combined_R1.fq.gz nr5a1ab21dmut-3_combined_R2.fq.gz,fastq fastq,1850334974.0,6126937.0,nr5a1ab21dmut 3 combined R1.fq.gz,0:151 1:151,A:470148849;C:425157376;G:428614793;T:526090487;N:323469,151,151,,,470148849,425157376,428614793,526090487,323469,SRX6748585,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.86747,0.88781,0.13442,0.09954,0.7514,0.75091,0.4841,0.58575,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53673,SRR10010354,SRX6748584,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 4,21dpf nr5a1a nr5a1b double mutant 4,21dpf nr5a1a nr5a1b double mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-4_combined_R1.fq.gz nr5a1ab21dmut-4_combined_R2.fq.gz,fastq fastq,4174074276.0,13821438.0,nr5a1ab21dmut 4 combined R1.fq.gz,0:151 1:151,A:1056833741;C:976094817;G:994472897;T:1145958470;N:714351,151,151,,,1056833741,976094817,994472897,1145958470,714351,SRX6748584,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89035,0.89997,0.10027,0.07415,0.7264,0.72829,0.48572,0.57325,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53674,SRR10010355,SRX6748583,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 1,21dpf nr5a1a nr5a1b double mutant 1,21dpf nr5a1a nr5a1b double mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-1_combined_R1.fq.gz nr5a1ab21dmut-1_combined_R2.fq.gz,fastq fastq,2417465606.0,8004853.0,nr5a1ab21dmut 1 combined R1.fq.gz,0:151 1:151,A:581742121;C:593490135;G:604923946;T:636944229;N:365175,151,151,,,581742121,593490135,604923946,636944229,365175,SRX6748583,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91256,0.92768,0.16171,0.10389,0.7525,0.75645,0.41647,0.53108,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53675,SRR10010356,SRX6748582,SRS5298723,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a nr5a1b double mutant 2,21dpf nr5a1a nr5a1b double mutant 2,21dpf nr5a1a nr5a1b double mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab21dmut-2_combined_R1.fq.gz nr5a1ab21dmut-2_combined_R2.fq.gz,fastq fastq,3285689634.0,10879767.0,nr5a1ab21dmut 2 combined R1.fq.gz,0:151 1:151,A:808126419;C:794634133;G:804858824;T:877512631;N:557627,151,151,,,808126419,794634133,804858824,877512631,557627,SRX6748582,SRS5298723,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90624,0.91945,0.14324,0.09474,0.74556,0.74901,0.46293,0.60218,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53676,SRR10010357,SRX6748581,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 7,35dpf nr5a1a mutant 7,35dpf nr5a1a mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-7_combined_R1.fq.gz nr5a1a35dmut-7_combined_R2.fq.gz,fastq fastq,2969897294.0,9834097.0,nr5a1a35dmut 7 combined R1.fq.gz,0:151 1:151,A:752593200;C:695994377;G:707935979;T:812884925;N:488813,151,151,,,752593200,695994377,707935979,812884925,488813,SRX6748581,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89218,0.906,0.09342,0.07022,0.73795,0.73898,0.51281,0.5911,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53677,SRR10010358,SRX6748580,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 8,35dpf nr5a1a mutant 8,35dpf nr5a1a mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-8_combined_R1.fq.gz nr5a1a35dmut-8_combined_R2.fq.gz,fastq fastq,6225038118.0,20612709.0,nr5a1a35dmut 8 combined R1.fq.gz,0:151 1:151,A:1559098665;C:1505493891;G:1534176065;T:1625255981;N:1013516,151,151,,,1559098665,1505493891,1534176065,1625255981,1013516,SRX6748580,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90023,0.90282,0.09369,0.06592,0.73525,0.73854,0.50906,0.59368,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53678,SRR10010359,SRX6748579,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 2,35dpf wild type 2,35dpf wild type 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-2_combined_R1.fq.gz nr5a1_35day_WT-2_combined_R2.fq.gz,fastq fastq,4142275186.0,13716143.0,nr5a1 35day WT 2 combined R1.fq.gz,0:151 1:151,A:1055251193;C:967398418;G:984879234;T:1134062187;N:684154,151,151,,,1055251193,967398418,984879234,1134062187,684154,SRX6748579,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89791,0.91014,0.09157,0.06806,0.73927,0.74067,0.515,0.58656,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53679,SRR10010360,SRX6748578,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 3,35dpf wild type 3,35dpf wild type 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-3_combined_R2.fq.gz nr5a1_35day_WT-3_combined_R1.fq.gz,fastq fastq,2471376532.0,8183366.0,nr5a1 35day WT 3 combined R1.fq.gz,0:151 1:151,A:615088670;C:576161730;G:582945558;T:696743565;N:437009,151,151,,,615088670,576161730,582945558,696743565,437009,SRX6748578,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87753,0.90284,0.1111,0.07857,0.72563,0.72794,0.50927,0.59766,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53680,SRR10010361,SRX6748577,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 4,35dpf wild type 4,35dpf wild type 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-4_combined_R1.fq.gz nr5a1_35day_WT-4_combined_R2.fq.gz,fastq fastq,2116363754.0,7007827.0,nr5a1 35day WT 4 combined R1.fq.gz,0:151 1:151,A:517886726;C:489788898;G:502421580;T:605882187;N:384363,151,151,,,517886726,489788898,502421580,605882187,384363,SRX6748577,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87446,0.91282,0.08961,0.06167,0.75325,0.75363,0.50444,0.58991,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53681,SRR10010362,SRX6748576,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 5,35dpf wild type 5,35dpf wild type 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-5_combined_R1.fq.gz nr5a1_35day_WT-5_combined_R2.fq.gz,fastq fastq,2730512464.0,9041432.0,nr5a1 35day WT 5 combined R1.fq.gz,0:151 1:151,A:676487187;C:641297195;G:648646413;T:763575356;N:506313,151,151,,,676487187,641297195,648646413,763575356,506313,SRX6748576,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87293,0.89776,0.08726,0.06177,0.7727,0.77402,0.47624,0.58994,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53682,SRR10010363,SRX6748575,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 6,35dpf wild type 6,35dpf wild type 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-6_combined_R1.fq.gz nr5a1_35day_WT-6_combined_R2.fq.gz,fastq fastq,2539526758.0,8409029.0,nr5a1 35day WT 6 combined R1.fq.gz,0:151 1:151,A:654061696;C:592950317;G:606528343;T:685572585;N:413817,151,151,,,654061696,592950317,606528343,685572585,413817,SRX6748575,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88978,0.89645,0.09493,0.07075,0.73509,0.73965,0.53187,0.55068,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53683,SRR10010364,SRX6748574,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 9,35dpf wild type 9,35dpf wild type 9,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-9_combined_R1.fq.gz nr5a1_35day_WT-9_combined_R2.fq.gz,fastq fastq,2585156844.0,8560122.0,nr5a1 35day WT 9 combined R1.fq.gz,0:151 1:151,A:659256640;C:603793032;G:616048994;T:705643382;N:414796,151,151,,,659256640,603793032,616048994,705643382,414796,SRX6748574,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90219,0.91318,0.11237,0.08413,0.74472,0.74799,0.52565,0.61427,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53684,SRR10010365,SRX6748573,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 1,21dpf nr5a1a mutant 1,21dpf nr5a1a mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-1_combined_R1.fq.gz nr5a1a21dmut-1_combined_R2.fq.gz,fastq fastq,4068155326.0,13470713.0,nr5a1a21dmut 1 combined R1.fq.gz,0:151 1:151,A:1017223225;C:976375957;G:994219587;T:1079701810;N:634747,151,151,,,1017223225,976375957,994219587,1079701810,634747,SRX6748573,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.9093,0.91636,0.11458,0.0805,0.74592,0.74767,0.47751,0.56844,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53685,SRR10010366,SRX6748572,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 2,21dpf nr5a1a mutant 2,21dpf nr5a1a mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-2_combined_R1.fq.gz nr5a1a21dmut-2_combined_R2.fq.gz,fastq fastq,2505906608.0,8297704.0,nr5a1a21dmut 2 combined R1.fq.gz,0:151 1:151,A:628340326;C:582556533;G:591788311;T:702775119;N:446319,151,151,,,628340326,582556533,591788311,702775119,446319,SRX6748572,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.86347,0.88795,0.12164,0.08953,0.73395,0.73419,0.46039,0.56191,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53686,SRR10010367,SRX6748571,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 3,21dpf nr5a1a mutant 3,21dpf nr5a1a mutant 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-3_combined_R1.fq.gz nr5a1a21dmut-3_combined_R2.fq.gz,fastq fastq,5177865500.0,17145250.0,nr5a1a21dmut 3 combined R1.fq.gz,0:151 1:151,A:1314291498;C:1203926598;G:1215376030;T:1443474497;N:796877,151,151,,,1314291498,1203926598,1215376030,1443474497,796877,SRX6748571,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88608,0.89825,0.10844,0.08157,0.74744,0.75073,0.49195,0.55116,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53687,SRR10010368,SRX6748570,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 4,21dpf nr5a1a mutant 4,21dpf nr5a1a mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-4_combined_R1.fq.gz nr5a1a21dmut-4_combined_R2.fq.gz,fastq fastq,2110370866.0,6987983.0,nr5a1a21dmut 4 combined R1.fq.gz,0:151 1:151,A:522374283;C:482991859;G:494663937;T:609971148;N:369639,151,151,,,522374283,482991859,494663937,609971148,369639,SRX6748570,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.86441,0.90249,0.09677,0.0767,0.7401,0.74046,0.43194,0.54853,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53688,SRR10010369,SRX6748569,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 8,35dpf nr5a1b mutant 8,35dpf nr5a1b mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-8_combined_R1.fq.gz nr5a1b35dmut-8_combined_R2.fq.gz,fastq fastq,3225498920.0,10680460.0,nr5a1b35dmut 8 combined R1.fq.gz,0:151 1:151,A:810589172;C:772659409;G:785398777;T:856326001;N:525561,151,151,,,810589172,772659409,785398777,856326001,525561,SRX6748569,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.9048,0.9133,0.0825,0.05993,0.74627,0.74933,0.52212,0.58896,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53689,SRR10010370,SRX6748568,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 5,21dpf nr5a1b mutant 5,21dpf nr5a1b mutant 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-5_combined_R1.fq.gz nr5a1b21dmut-5_combined_R2.fq.gz,fastq fastq,2397758898.0,7939599.0,nr5a1b21dmut 5 combined R1.fq.gz,0:151 1:151,A:615206092;C:551215873;G:563698041;T:667222159;N:416733,151,151,,,615206092,551215873,563698041,667222159,416733,SRX6748568,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.85518,0.87383,0.07575,0.062,0.7433,0.74302,0.48889,0.54776,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53690,SRR10010371,SRX6748567,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 5,21dpf wild type 5,21dpf wild type 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-5_combined_R1.fq.gz nr5a1_21day_WT-5_combined_R2.fq.gz,fastq fastq,1875926152.0,6211676.0,nr5a1 21day WT 5 combined R1.fq.gz,0:151 1:151,A:477701808;C:436167533;G:445970379;T:515756259;N:330173,151,151,,,477701808,436167533,445970379,515756259,330173,SRX6748567,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.86641,0.88274,0.07822,0.06302,0.74065,0.74268,0.49044,0.53592,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53691,SRR10010372,SRX6748566,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 6,21dpf wild type 6,21dpf wild type 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-6_combined_R1.fq.gz nr5a1_21day_WT-6_combined_R2.fq.gz,fastq fastq,3892257238.0,12888269.0,nr5a1 21day WT 6 combined R1.fq.gz,0:151 1:151,A:977107658;C:920939016;G:939376756;T:1054183786;N:650022,151,151,,,977107658,920939016,939376756,1054183786,650022,SRX6748566,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90581,0.91407,0.09238,0.06994,0.72928,0.7316,0.47464,0.54022,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53692,SRR10010373,SRX6748565,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 7,21dpf wild type 7,21dpf wild type 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-7_combined_R1.fq.gz nr5a1_21day_WT-7_combined_R2.fq.gz,fastq fastq,2540194480.0,8411240.0,nr5a1 21day WT 7 combined R1.fq.gz,0:151 1:151,A:643088594;C:592170077;G:602584725;T:701928622;N:422462,151,151,,,643088594,592170077,602584725,701928622,422462,SRX6748565,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90208,0.91776,0.10234,0.07684,0.74381,0.74793,0.50627,0.5718,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53693,SRR10010374,SRX6748564,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 8,21dpf wild type 8,21dpf wild type 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-8_combined_R1.fq.gz nr5a1_21day_WT-8_combined_R2.fq.gz,fastq fastq,3311633548.0,10965674.0,nr5a1 21day WT 8 combined R1.fq.gz,0:151 1:151,A:823322153;C:788459107;G:803264255;T:896048885;N:539148,151,151,,,823322153,788459107,803264255,896048885,539148,SRX6748564,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89814,0.91328,0.10771,0.07611,0.74456,0.74736,0.46236,0.55982,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53694,SRR10010375,SRX6748563,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 1,21dpf wild type 1,21dpf wild type 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-1_combined_R1.fq.gz nr5a1_21day_WT-1_combined_R2.fq.gz,fastq fastq,4233284094.0,14017497.0,nr5a1 21day WT 1 combined R1.fq.gz,0:151 1:151,A:1019536917;C:1019670795;G:1048583808;T:1144823115;N:669459,151,151,,,1019536917,1019670795,1048583808,1144823115,669459,SRX6748563,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90465,0.92862,0.12949,0.08548,0.75759,0.76134,0.46256,0.54131,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53695,SRR10010376,SRX6748562,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 2,21dpf wild type 2,21dpf wild type 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-2_combined_R1.fq.gz nr5a1_21day_WT-2_combined_R2.fq.gz,fastq fastq,3045409978.0,10084139.0,nr5a1 21day WT 2 combined R1.fq.gz,0:151 1:151,A:750366581;C:741452134;G:747756768;T:805335602;N:498893,151,151,,,750366581,741452134,747756768,805335602,498893,SRX6748562,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91038,0.91898,0.12816,0.0853,0.7475,0.75063,0.45891,0.5815,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53696,SRR10010377,SRX6748561,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 3,21dpf wild type 3,21dpf wild type 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-3_combined_R1.fq.gz nr5a1_21day_WT-3_combined_R2.fq.gz,fastq fastq,2883771122.0,9548911.0,nr5a1 21day WT 3 combined R1.fq.gz,0:151 1:151,A:720580530;C:687030945;G:693106513;T:782554064;N:499070,151,151,,,720580530,687030945,693106513,782554064,499070,SRX6748561,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89664,0.90411,0.09857,0.07143,0.73742,0.73852,0.47183,0.55193,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53697,SRR10010378,SRX6748560,SRS5298722,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf wildtype,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf wild type 4,21dpf wild type 4,21dpf wild type 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_21day_WT-4_combined_R1.fq.gz nr5a1_21day_WT-4_combined_R2.fq.gz,fastq fastq,1669634784.0,5528592.0,nr5a1 21day WT 4 combined R1.fq.gz,0:151 1:151,A:412697030;C:395937730;G:404509253;T:456214241;N:276530,151,151,,,412697030,395937730,404509253,456214241,276530,SRX6748560,SRS5298722,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87728,0.89949,0.10088,0.07121,0.75383,0.75521,0.46951,0.57045,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53698,SRR10010379,SRX6748559,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 10,35dpf wild type 10,35dpf wild type 10,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-10_combined_R1.fq.gz nr5a1_35day_WT-10_combined_R2.fq.gz,fastq fastq,3038724000.0,10062000.0,nr5a1 35day WT 10 combined R1.fq.gz,0:151 1:151,A:764571339;C:715912069;G:728730982;T:828987265;N:522345,151,151,,,764571339,715912069,728730982,828987265,522345,SRX6748559,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87838,0.89181,0.08908,0.06618,0.7484,0.7485,0.53115,0.59993,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53699,SRR10010380,SRX6748558,SRS5298721,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf wildtype,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf wild type 1,35dpf wild type 1,35dpf wild type 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1_35day_WT-1_combined_R1.fq.gz nr5a1_35day_WT-1_combined_R2.fq.gz,fastq fastq,3598780584.0,11916492.0,nr5a1 35day WT 1 combined R1.fq.gz,0:151 1:151,A:886857565;C:874550481;G:894991137;T:941808129;N:573272,151,151,,,886857565,874550481,894991137,941808129,573272,SRX6748558,SRS5298721,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.9139,0.92164,0.10525,0.06463,0.75057,0.75211,0.49642,0.57074,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53700,SRR10010381,SRX6748557,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 6,35dpf nr5a1b mutant 6,35dpf nr5a1b mutant 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-6_combined_R1.fq.gz nr5a1b35dmut-6_combined_R2.fq.gz,fastq fastq,4476352418.0,14822359.0,nr5a1b35dmut 6 combined R1.fq.gz,0:151 1:151,A:1120206233;C:1067519728;G:1089929887;T:1197971503;N:725067,151,151,,,1120206233,1067519728,1089929887,1197971503,725067,SRX6748557,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91501,0.91912,0.08509,0.05807,0.74663,0.7488,0.51898,0.57667,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53701,SRR10010382,SRX6748556,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 5,35dpf nr5a1b mutant 5,35dpf nr5a1b mutant 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-5_combined_R1.fq.gz nr5a1b35dmut-5_combined_R2.fq.gz,fastq fastq,4009328142.0,13275921.0,nr5a1b35dmut 5 combined R1.fq.gz,0:151 1:151,A:1067904920;C:901186174;G:923523205;T:1116013227;N:700616,151,151,,,1067904920,901186174,923523205,1116013227,700616,SRX6748556,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.80761,0.83261,0.06793,0.05143,0.75911,0.76114,0.55479,0.61755,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53702,SRR10010383,SRX6748555,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 2,21dpf nr5a1b mutant 2,21dpf nr5a1b mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-2_combined_R1.fq.gz nr5a1b21dmut-2_combined_R2.fq.gz,fastq fastq,2264787392.0,7499296.0,nr5a1b21dmut 2 combined R1.fq.gz,0:151 1:151,A:577188441;C:509507826;G:516653827;T:661021300;N:415998,151,151,,,577188441,509507826,516653827,661021300,415998,SRX6748555,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.85013,0.88233,0.10196,0.07899,0.72762,0.72768,0.50451,0.57721,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53703,SRR10010384,SRX6748554,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 1,21dpf nr5a1b mutant 1,21dpf nr5a1b mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-1_combined_R1.fq.gz nr5a1b21dmut-1_combined_R2.fq.gz,fastq fastq,5900631530.0,19538515.0,nr5a1b21dmut 1 combined R1.fq.gz,0:151 1:151,A:1457892768;C:1433320625;G:1464136662;T:1544328487;N:952988,151,151,,,1457892768,1433320625,1464136662,1544328487,952988,SRX6748554,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90637,0.91209,0.14421,0.09815,0.73673,0.73959,0.45526,0.58028,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53704,SRR10010385,SRX6748553,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 6,35dpf nr5a1a mutant 6,35dpf nr5a1a mutant 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-6_combined_R1.fq.gz nr5a1a35dmut-6_combined_R2.fq.gz,fastq fastq,3073492354.0,10177127.0,nr5a1a35dmut 6 combined R1.fq.gz,0:151 1:151,A:789160217;C:716824009;G:740200723;T:826797684;N:509721,151,151,,,789160217,716824009,740200723,826797684,509721,SRX6748553,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.87516,0.88431,0.09065,0.07016,0.74588,0.74726,0.53057,0.60951,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53705,SRR10010386,SRX6748552,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 5,35dpf nr5a1a mutant 5,35dpf nr5a1a mutant 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-5_combined_R1.fq.gz nr5a1a35dmut-5_combined_R2.fq.gz,fastq fastq,3240379668.0,10729734.0,nr5a1a35dmut 5 combined R1.fq.gz,0:151 1:151,A:850546438;C:745212890;G:765395973;T:878658019;N:566348,151,151,,,850546438,745212890,765395973,878658019,566348,SRX6748552,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.81872,0.83649,0.07435,0.05495,0.75225,0.75461,0.51257,0.58856,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53706,SRR10010387,SRX6748551,SRS5298720,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1b,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1b mutant 6,21dpf nr5a1b mutant 6,21dpf nr5a1b mutant 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b21dmut-6_combined_R1.fq.gz nr5a1b21dmut-6_combined_R2.fq.gz,fastq fastq,3384770096.0,11207848.0,nr5a1b21dmut 6 combined R1.fq.gz,0:151 1:151,A:861183234;C:797950851;G:807513834;T:917578636;N:543541,151,151,,,861183234,797950851,807513834,917578636,543541,SRX6748551,SRS5298720,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90245,0.90886,0.09636,0.07472,0.74004,0.743,0.46058,0.53685,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53707,SRR10010388,SRX6748550,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 2,35dpf nr5a1a mutant 2,35dpf nr5a1a mutant 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-2_combined_R1.fq.gz nr5a1a35dmut-2_combined_R2.fq.gz,fastq fastq,1239380518.0,4103909.0,nr5a1a35dmut 2 combined R1.fq.gz,0:151 1:151,A:309089709;C:300159914;G:303434072;T:326498923;N:197900,151,151,,,309089709,300159914,303434072,326498923,197900,SRX6748550,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91546,0.92068,0.11935,0.07796,0.74397,0.7474,0.48962,0.61439,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53708,SRR10010389,SRX6748549,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 1,35dpf nr5a1a mutant 1,35dpf nr5a1a mutant 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-1_combined_R1.fq.gz nr5a1a35dmut-1_combined_R2.fq.gz,fastq fastq,2224834906.0,7367003.0,nr5a1a35dmut 1 combined R1.fq.gz,0:151 1:151,A:541266079;C:545117817;G:559850378;T:578249036;N:351596,151,151,,,541266079,545117817,559850378,578249036,351596,SRX6748549,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91337,0.9214,0.12797,0.08298,0.74961,0.75483,0.45923,0.54594,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53709,SRR10010390,SRX6748548,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 4,35dpf nr5a1a mutant 4,35dpf nr5a1a mutant 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-4_combined_R1.fq.gz nr5a1a35dmut-4_combined_R2.fq.gz,fastq fastq,2564347836.0,8491218.0,nr5a1a35dmut 4 combined R1.fq.gz,0:151 1:151,A:626506801;C:604109158;G:622843659;T:710461729;N:426489,151,151,,,626506801,604109158,622843659,710461729,426489,SRX6748548,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88743,0.91434,0.08038,0.05675,0.75562,0.75676,0.47736,0.57787,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53710,SRR10010391,SRX6748547,SRS5298719,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a mutant 3,35dpf nr5a1a mutant 3,35dpf nr5a1a mutant 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a35dmut-3_combined_R1.fq.gz nr5a1a35dmut-3_combined_R2.fq.gz,fastq fastq,2109532212.0,6985206.0,nr5a1a35dmut 3 combined R1.fq.gz,0:151 1:151,A:523059463;C:502631876;G:510494846;T:572988523;N:357504,151,151,,,523059463,502631876,510494846,572988523,357504,SRX6748547,SRS5298719,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.89446,0.90702,0.08692,0.06146,0.75049,0.75312,0.5212,0.57721,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53711,SRR10010392,SRX6748546,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 6,21dpf nr5a1a mutant 6,21dpf nr5a1a mutant 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-6_combined_R1.fq.gz nr5a1a21dmut-6_combined_R2.fq.gz,fastq fastq,2094501672.0,6935436.0,nr5a1a21dmut 6 combined R1.fq.gz,0:151 1:151,A:522046863;C:501034595;G:506909098;T:564180097;N:331019,151,151,,,522046863,501034595,506909098,564180097,331019,SRX6748546,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90679,0.91646,0.11189,0.07897,0.74428,0.74771,0.44274,0.53352,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53712,SRR10010393,SRX6748545,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 5,21dpf nr5a1a mutant 5,21dpf nr5a1a mutant 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-5_combined_R1.fq.gz nr5a1a21dmut-5_combined_R2.fq.gz,fastq fastq,2104404856.0,6968228.0,nr5a1a21dmut 5 combined R1.fq.gz,0:151 1:151,A:536145551;C:492187666;G:501143675;T:574557684;N:370280,151,151,,,536145551,492187666,501143675,574557684,370280,SRX6748545,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.86941,0.88309,0.08729,0.0711,0.72857,0.73048,0.47555,0.52991,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53713,SRR10010394,SRX6748544,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 8,21dpf nr5a1a mutant 8,21dpf nr5a1a mutant 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-8_combined_R1.fq.gz nr5a1a21dmut-8_combined_R2.fq.gz,fastq fastq,2266701468.0,7505634.0,nr5a1a21dmut 8 combined R1.fq.gz,0:151 1:151,A:573714272;C:538051325;G:547611130;T:606957830;N:366911,151,151,,,573714272,538051325,547611130,606957830,366911,SRX6748544,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.9024,0.90712,0.10447,0.08144,0.71687,0.72066,0.46792,0.53188,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53714,SRR10010395,SRX6748543,SRS5298718,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,21dpf nr5a1a,,strain:AB|age:21 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b +/+|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 21dpf nr5a1a mutant 7,21dpf nr5a1a mutant 7,21dpf nr5a1a mutant 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1a21dmut-7_combined_R1.fq.gz nr5a1a21dmut-7_combined_R2.fq.gz,fastq fastq,2754530826.0,9120963.0,nr5a1a21dmut 7 combined R1.fq.gz,0:151 1:151,A:694171422;C:632458248;G:643565340;T:783901287;N:434529,151,151,,,694171422,632458248,643565340,783901287,434529,SRX6748543,SRS5298718,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.88557,0.91232,0.10743,0.08366,0.73896,0.74081,0.42454,0.58309,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Larval,Larval,Trunk,Surface Structure
53715,SRR10010396,SRX6748542,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 13,35dpf nr5a1a nr5a1b double mutant 13,35dpf nr5a1a nr5a1b double mutant 13,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-13_combined_R1.fq.gz nr5a1ab35dmut-13_combined_R2.fq.gz,fastq fastq,4623122002.0,15308351.0,nr5a1ab35dmut 13 combined R1.fq.gz,0:151 1:151,A:1157235877;C:1116162876;G:1129874932;T:1219134272;N:714045,151,151,,,1157235877,1116162876,1129874932,1219134272,714045,SRX6748542,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.91894,0.92533,0.11425,0.08034,0.75635,0.76023,0.50951,0.61492,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53716,SRR10010397,SRX6748541,SRS5298717,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1a nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a  /  ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1a nr5a1b double mutant 12,35dpf nr5a1a nr5a1b double mutant 12,35dpf nr5a1a nr5a1b double mutant 12,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1ab35dmut-12_combined_R1.fq.gz nr5a1ab35dmut-12_combined_R2.fq.gz,fastq fastq,2610452666.0,8643883.0,nr5a1ab35dmut 12 combined R1.fq.gz,0:151 1:151,A:648839778;C:629525229;G:642133919;T:689532605;N:421135,151,151,,,648839778,629525229,642133919,689532605,421135,SRX6748541,SRS5298717,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90931,0.91675,0.11029,0.07732,0.74584,0.74937,0.48342,0.59544,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
53717,SRR10010398,SRX6748540,SRS5298716,SRP219014,PRJNA561212,RNA Seq of nr5a1a and nr5a1b mutant zebrafish,PRJNA561212,Transcriptome Analysis,Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of theanimals by removing the anterior of the fish from just posterior of the pectoral finand removing the caudal peduncle posterior to the anus. Trunks were individuallyhomogenized in 200ul Trizol. Total RNA was extracted using the Ribopure RNAPurification Kit ThermoFisher. Total RNA was enriched for mRNA using DynabeadsrOligodt25 ThermoFisher. We constructed indexed  strand specific cDNA sequencinglibraries using the NEXTflextm qRNA seq kit BIOO Scientific. Libraryconcentrations were quantified using a Qubitr fluorometer Life Technologies normalized to a concentration of 2.3nM  and multiplexed. Prior to sequencing  wefurther evaluated the quality of the multiplexed library by quantitative real timePCR using the Kapa Library Quantification Kit Kapa Biosystems. Two lanes ofpaired end 150 base pair bp sequencing were performed on an Illumina HiSeq 4000.,,,,,35dpf nr5a1b,,strain:AB|age:35 dpf|sex:not applicable|tissue:trunk|biomaterial provider:Postlethwait lab  University of Oregon|genotype:nr5a1a +/+ ; nr5a1b  / |BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 35dpf nr5a1b mutant 3,35dpf nr5a1b mutant 3,35dpf nr5a1b mutant 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP219014,,,nr5a1b35dmut-3_combined_R1.fq.gz nr5a1b35dmut-3_combined_R2.fq.gz,fastq fastq,1943393556.0,6435078.0,nr5a1b35dmut 3 combined R1.fq.gz,0:151 1:151,A:475436905;C:468830275;G:477482918;T:521312410;N:331048,151,151,,,475436905,468830275,477482918,521312410,331048,SRX6748540,SRS5298716,SRA946180,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.90426,0.92131,0.09556,0.06323,0.75327,0.75292,0.50371,0.57748,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-08-21,Juvenile,Juvenile,Trunk,Surface Structure
67535,SRR17191184,SRX13373023,SRS11277345,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LT2 5 1,LT2 5 1,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body10|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LT2 5 1,LT2 5 1,The cDNA librarie was constructed from zebrafish larvae treated by low concentration tire wear particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6006 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LT2_5_1_1.fq.gz LT2_5_1_2.fq.gz,fastq fastq,6355172100.0,21183907.0,LT2 5 1 1.fq.gz,0:150 1:150,A:1692532186;C:1495123900;G:1493518955;T:1673652858;N:344201,150,150,,,1692532186,1495123900,1493518955,1673652858,344201,SRX13373023,SRS11277345,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.94919,0.94714,0.08463,0.08356,0.65553,0.65715,0.47802,0.48303,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67536,SRR17191185,SRX13373022,SRS11277346,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LM100 3,LM100 3,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body9|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LM100 3,LM100 3,The cDNA librarie was constructed from zebrafish larvae treated by high concentration road particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6005 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LM100_3_1.fq.gz LM100_3_2.fq.gz,fastq fastq,6993427200.0,23311424.0,LM100 3 1.fq.gz,0:150 1:150,A:1840660966;C:1658361838;G:1666920090;T:1827424421;N:59885,150,150,,,1840660966,1658361838,1666920090,1827424421,59885,SRX13373022,SRS11277346,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95677,0.95477,0.06791,0.06756,0.65531,0.6552,0.49085,0.49017,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67537,SRR17191186,SRX13373021,SRS11277344,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LM100 2,LM100 2,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body8|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LM100 2,LM100 2,The cDNA librarie was constructed from zebrafish larvae treated by high concentration road particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6004 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LM100_2_1.fq.gz LM100_2_2.fq.gz,fastq fastq,6428993400.0,21429978.0,LM100 2 1.fq.gz,0:150 1:150,A:1701794239;C:1523306298;G:1520155501;T:1683386473;N:350889,150,150,,,1701794239,1523306298,1520155501,1683386473,350889,SRX13373021,SRS11277344,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95457,0.95198,0.07446,0.07392,0.65484,0.65547,0.4943,0.49318,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67538,SRR17191187,SRX13373020,SRS11277342,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LM100 1,LM100 1,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body7|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LM100 1,LM100 1,The cDNA librarie was constructed from zebrafish larvae treated by high concentration road particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6003 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LM100_1_1.fq.gz LM100_1_2.fq.gz,fastq fastq,6678576600.0,22261922.0,LM100 1 1.fq.gz,0:150 1:150,A:1773351023;C:1578046234;G:1574674518;T:1752136583;N:368242,150,150,,,1773351023,1578046234,1574674518,1752136583,368242,SRX13373020,SRS11277342,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95268,0.94949,0.08246,0.0821,0.65744,0.66011,0.49051,0.49276,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67539,SRR17191188,SRX13373019,SRS11277341,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LM10 3,LM10 3,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body6|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LM10 3,LM10 3,The cDNA librarie was constructed from zebrafish larvae treated by low concentration road particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6002 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LM10_3_1.fq.gz LM10_3_2.fq.gz,fastq fastq,6825978000.0,22753260.0,LM10 3 1.fq.gz,0:150 1:150,A:1812535717;C:1612480097;G:1606739928;T:1793839846;N:382412,150,150,,,1812535717,1612480097,1606739928,1793839846,382412,SRX13373019,SRS11277341,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95382,0.95278,0.07718,0.07712,0.6562,0.6561,0.48018,0.48034,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67540,SRR17191189,SRX13373018,SRS11277343,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LM10 2,LM10 2,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LM10 2,LM10 2,The cDNA librarie was constructed from zebrafish larvae treated by low concentration road particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6001 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LM10_2_1.fq.gz LM10_2_2.fq.gz,fastq fastq,6274853400.0,20916178.0,LM10 2 1.fq.gz,0:150 1:150,A:1670545321;C:1478346621;G:1473194830;T:1652427844;N:338784,150,150,,,1670545321,1478346621,1473194830,1652427844,338784,SRX13373018,SRS11277343,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95255,0.9416,0.08061,0.07916,0.65598,0.65776,0.48378,0.48631,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67541,SRR17191190,SRX13373017,SRS11277338,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LM10 1,LM10 1,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LM10 1,LM10 1,The cDNA librarie was constructed from zebrafish larvae treated by low concentration road particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6000 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LM10_1_1.fq.gz LM10_1_2.fq.gz,fastq fastq,6634350000.0,22114500.0,LM10 1 1.fq.gz,0:150 1:150,A:1764979073;C:1564650554;G:1560184813;T:1744173580;N:361980,150,150,,,1764979073,1564650554,1560184813,1744173580,361980,SRX13373017,SRS11277338,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95247,0.94962,0.07678,0.07606,0.65648,0.65837,0.48867,0.48222,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67542,SRR17191191,SRX13373016,SRS11277340,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,CK3,CK3,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,CK3,CK3,The cDNA librarie was constructed from control group zebrafish larvae. The libraries were sequenced using an Illumina Novaseq 6002 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,CK3_1.fq.gz CK3_2.fq.gz,fastq fastq,6442858800.0,21476196.0,CK3 1.fq.gz,0:150 1:150,A:1709894381;C:1522924138;G:1523272496;T:1686418644;N:349141,150,150,,,1709894381,1522924138,1523272496,1686418644,349141,SRX13373016,SRS11277340,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.9629,0.94845,0.04492,0.04355,0.73752,0.74089,0.48412,0.48472,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67543,SRR17191192,SRX13373015,SRS11277339,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LT25 3,LT25 3,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body15|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LT25 3,LT25 3,The cDNA librarie was constructed from zebrafish larvae treated by high concentration tire wear particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6011 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LT25_3_1.fq.gz LT25_3_2.fq.gz,fastq fastq,6649696800.0,22165656.0,LT25 3 1.fq.gz,0:150 1:150,A:1773928092;C:1552739246;G:1555610815;T:1767054104;N:364543,150,150,,,1773928092,1552739246,1555610815,1767054104,364543,SRX13373015,SRS11277339,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.94632,0.9444,0.04887,0.04847,0.75702,0.75763,0.45747,0.47867,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67544,SRR17191193,SRX13373014,SRS11277337,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LT25 2,LT25 2,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body14|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LT25 2,LT25 2,The cDNA librarie was constructed from zebrafish larvae treated by high concentration tire wear particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6010 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LT25_2_1.fq.gz LT25_2_2.fq.gz,fastq fastq,7081101000.0,23603670.0,LT25 2 1.fq.gz,0:150 1:150,A:1854482058;C:1695572359;G:1695167836;T:1835494035;N:384712,150,150,,,1854482058,1695572359,1695167836,1835494035,384712,SRX13373014,SRS11277337,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95537,0.95349,0.07622,0.0755,0.6566,0.6574,0.49112,0.4885,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67545,SRR17191194,SRX13373013,SRS11277333,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LT25 1,LT25 1,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body13|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LT25 1,LT25 1,The cDNA librarie was constructed from zebrafish larvae treated by high concentration tire wear particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6009 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LT25_1_1.fq.gz LT25_1_2.fq.gz,fastq fastq,6667605600.0,22225352.0,LT25 1 1.fq.gz,0:150 1:150,A:1740379719;C:1600230796;G:1601983926;T:1724655312;N:355847,150,150,,,1740379719,1600230796,1601983926,1724655312,355847,SRX13373013,SRS11277333,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95447,0.9529,0.0792,0.07864,0.65498,0.65502,0.48602,0.48538,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure
67546,SRR17191195,SRX13373012,SRS11277336,SRP350168,PRJNA787741,The effects of tire wear particles on zebrafish eyes,PRJNA787741,Other,The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles,,,,LT2 5 3,LT2 5 3,,isolate:larvae|age:5 days|sex:not determined|tissue:whole body12|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio larvea,LT2 5 3,LT2 5 3,The cDNA librarie was constructed from zebrafish larvae treated by low concentration tire wear particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6008 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350168,,,LT2_5_3_1.fq.gz LT2_5_3_2.fq.gz,fastq fastq,6828759900.0,22762533.0,LT2 5 3 1.fq.gz,0:150 1:150,A:1812242219;C:1614183257;G:1611383597;T:1790226183;N:724644,150,150,,,1812242219,1614183257,1611383597,1790226183,724644,SRX13373012,SRS11277336,SRA1341542,Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES,Chinese Academy of Sciences,2,0.95078,0.94825,0.08641,0.08506,0.66306,0.66316,0.49287,0.49262,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-10,Larval,Larval,Trunk,Surface Structure