rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
174,DRR084198,DRX078029,DRS086523,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo testosterone treatment,zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq  replicate2],SAMD00073605,,sample name:TES1 4th|replicate:biological replicate 2,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073605,DRX078029,zebrafish ovary isolated from adult fish in vivo testosterone treatment. [RNAseq  replicate2],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073605,,,,1382763132.0,38410087.0,DRR084198,0:36,A:314367195;C:333340483;G:353519828;T:378654329;N:2881297,36,,,,314367195,333340483,353519828,378654329,2881297,DRX078029,DRS086523,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.90366,,0.02033,,0.77104,,0.46543,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
176,DRR084196,DRX078027,DRS086521,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo ethanol treatment,zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq  replicate2],SAMD00073603,,sample name:Et 4th|replicate:biological replicate 2,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073603,DRX078027,zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq  replicate2],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073603,,,,1456791660.0,40466435.0,DRR084196,0:36,A:336533534;C:355126203;G:368021063;T:394179246;N:2931614,36,,,,336533534,355126203,368021063,394179246,2931614,DRX078027,DRS086521,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.89408,,0.02082,,0.77027,,0.45866,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
177,DRR084195,DRX078026,DRS086520,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,natural paring late sample,zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq  replicate2],SAMD00073602,,sample name:O 4th|replicate:biological replicate 2,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073602,DRX078026,zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq  replicate2],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073602,,,,1627945092.0,45220697.0,DRR084195,0:36,A:381205209;C:392853175;G:410714269;T:439790560;N:3381879,36,,,,381205209,392853175,410714269,439790560,3381879,DRX078026,DRS086520,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.89419,,0.02159,,0.76848,,0.46407,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
178,DRR084194,DRX078025,DRS086519,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo maturation inducing hormone DHP treatment,zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq  replicate2],SAMD00073601,,sample name:DHP 4th|replicate:biological replicate 2,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073601,DRX078025,zebrafish ovary isolated from adult fish in vivo maturation inducing hormone DHP treatment. [RNAseq  replicate2],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073601,,,,969680196.0,26935561.0,DRR084194,0:36,A:223558856;C:233793515;G:244712298;T:265549055;N:2066472,36,,,,223558856,233793515,244712298,265549055,2066472,DRX078025,DRS086519,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.90178,,0.02203,,0.76579,,0.46491,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
179,DRR084193,DRX078024,DRS086518,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo diethylstilbestrol DES treatment,zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq  replicate2],SAMD00073600,,sample name:DES 4th|replicate:biological replicate 2,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073600,DRX078024,zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq  replicate2],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073600,,,,825301296.0,22925036.0,DRR084193,0:36,A:189771874;C:198593952;G:209666041;T:225480165;N:1789264,36,,,,189771874,198593952,209666041,225480165,1789264,DRX078024,DRS086518,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.90036,,0.0197,,0.7721,,0.45773,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
180,DRR084192,DRX078023,DRS086517,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,natural paring late sample,zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq  replicate1],SAMD00073599,,sample name:O|replicate:biological replicate 1,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073599,DRX078023,zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq  replicate1],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073599,,,,1474870356.0,40968621.0,DRR084192,0:36,A:334130826;C:361572335;G:369758908;T:409173431;N:234856,36,,,,334130826,361572335,369758908,409173431,234856,DRX078023,DRS086517,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91516,,0.02086,,0.76792,,0.47914,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
182,DRR084190,DRX078021,DRS086515,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo maturation inducing hormone DHP treatment,zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq  replicate1],SAMD00073597,,sample name:DHP|replicate:biological replicate 1,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073597,DRX078021,zebrafish ovary isolated from adult fish in vivo maturation inducing hormone DHP treatment. [RNAseq  replicate1],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073597,,,,1527194556.0,42422071.0,DRR084190,0:36,A:352068936;C:371030475;G:383086948;T:420761508;N:246689,36,,,,352068936,371030475,383086948,420761508,246689,DRX078021,DRS086515,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91815,,0.02248,,0.76209,,0.46867,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
183,DRR084189,DRX078020,DRS086514,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo testosterone treatment,zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq  replicate1],SAMD00073596,,sample name:TES|replicate:biological replicate 1,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073596,DRX078020,zebrafish ovary isolated from adult fish in vivo testosterone treatment. [RNAseq  replicate1],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073596,,,,1403618796.0,38989411.0,DRR084189,0:36,A:321063874;C:342718133;G:352434647;T:387171455;N:230687,36,,,,321063874,342718133,352434647,387171455,230687,DRX078020,DRS086514,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91583,,0.02212,,0.76073,,0.47596,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
184,DRR084188,DRX078019,DRS086513,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo diethylstilbestrol DES treatment,zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq  replicate1],SAMD00073595,,sample name:DES|replicate:biological replicate 1,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073595,DRX078019,zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq  replicate1],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073595,,,,1532053512.0,42557042.0,DRR084188,0:36,A:342701220;C:372650449;G:392432461;T:424025702;N:243680,36,,,,342701220,372650449,392432461,424025702,243680,DRX078019,DRS086513,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.91276,,0.01965,,0.77358,,0.46461,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
185,DRR084187,DRX078018,DRS086512,DRP004758,PRJDB5490,Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish,DRP004758,Other,Two essential processes  oocyte maturation and ovulation  before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid  17  20 beta dihydroxy 4 pregnen 3 one 17  20 beta DHP  in teleost  the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation  the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way  ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project  ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.,,,in vivo ethanol treatment,zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq  replicate1],SAMD00073594,,sample name:EtOH|replicate:biological replicate 1,,,,,,,,,Illumina HiSeq 2500 sequencing of SAMD00073594,DRX078018,zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq  replicate1],1,Agilent SureSelect Strand Specific RNA Prep Kit,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP004758,Illumina HiSeq 2500 sequencing of SAMD00073594,,,,1152032724.0,32000909.0,DRR084187,0:36,A:265166034;C:279617628;G:285136940;T:321928656;N:183466,36,,,,265166034,279617628,285136940,321928656,183466,DRX078018,DRS086512,DRA005484,SHIZUOKA|Shizuoka University,Shizuoka University,1,0.90791,,0.02405,,0.75972,,0.48931,,36,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-01-23,Adult,Adult,Gonad,Reproductive System
29187,SRR8176747,SRX4996876,SRS4031879,SRP480945,PRJNA1055160,Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain,PRJNA1055160,Other,We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf,,pubmed:38529407,,Nadia 19dpf ZZ Gonad Single Cell RNA Seq,Nadia 19dpf ZZ Gonad Single Cell RNA Seq,,strain:Nadia|age:19 dpf provider:John H. Postlethwait  University of Oregon|genotype:ZZ|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of Danio rerio: Nadia 19dpf ZZ gonad,Nadia 19dpf ZZ gonad,Nadia 19dpf ZZ gonad,A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP480945,,loader:fastq load.py,,,15090036999.0,107021539.0,zz 19NAmale I1 001.fastq.gz,0:8 1:133,A:4154103253;C:3402890354;G:3765557416;T:3755723849;N:11762127,8,133,,,4154103253,3402890354,3765557416,3755723849,11762127,SRX4996876,SRS4031879,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,,,,,,,,,,,,T,B,sc-like readlen,illumina,nextseq,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,United States,2018-11-08,Larval,Larval,Gonad,Reproductive System
29188,SRR8176753,SRX4996870,SRS4031878,SRP480945,PRJNA1055160,Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain,PRJNA1055160,Other,We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf,,pubmed:38529407,,Nadia 30dpf ZZ Gonad Single Cell RNA Seq,Nadia 30dpf ZZ Gonad Single Cell RNA Seq,,strain:Nadia|age:30 dpf provider:John H. Postlethwait  University of Oregon|genotype:ZZ|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of Danio rerio: Nadia 30dpf ZZ gonad,Nadia 30dpf ZZ gonad,Nadia 30dpf ZZ gonad,A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP480945,,loader:fastq load.py,,,23587173438.0,167284918.0,1 I1 001.fastq.gz,0:8 1:133,A:6732844252;C:4934497997;G:5685086026;T:6219863789;N:14881374,8,133,,,6732844252,4934497997,5685086026,6219863789,14881374,SRX4996870,SRS4031878,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,,,,,,,,,,,,T,B,sc-like readlen,illumina,nextseq,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,United States,2018-11-08,Juvenile,Juvenile,Gonad,Reproductive System
29189,SRR8176754,SRX4996869,SRS4031877,SRP480945,PRJNA1055160,Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain,PRJNA1055160,Other,We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf,,pubmed:38529407,,Nadia 30dpf ZW Gonad Single Cell RNA Seq,Nadia 30dpf ZW Gonad Single Cell RNA Seq,,strain:Nadia|age:30 dpf provider:John H. Postlethwait  University of Oregon|genotype:ZW|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of Danio rerio: Nadia 30dpf ZW gonad,Nadia 30dpf ZW gonad,Nadia 30dpf ZW gonad,A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP480945,,loader:fastq load.py,,,43358808480.0,307509280.0,2 I1 001.fastq.gz,0:8 1:133,A:12290612367;C:8880655083;G:10261318751;T:11898771792;N:27450487,8,133,,,12290612367,8880655083,10261318751,11898771792,27450487,SRX4996869,SRS4031877,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,,,,,,,,,,,,T,B,sc-like readlen,illumina,nextseq,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,United States,2018-11-08,Juvenile,Juvenile,Gonad,Reproductive System
29190,SRR8176756,SRX4996867,SRS4031876,SRP480945,PRJNA1055160,Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain,PRJNA1055160,Other,We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf,,pubmed:38529407,,Nadia 19dpf ZW Gonad Single Cell RNA Seq,Nadia 19dpf ZW Gonad Single Cell RNA Seq,,strain:Nadia|age:19 dpf provider:John H. Postlethwait  University of Oregon|genotype:ZW|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of Danio rerio: Nadia 19dpf ZW gonad,Nadia 19dpf ZW gonad,Nadia 19dpf ZW gonad,A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP480945,,loader:fastq load.py,,,17141425554.0,121570394.0,zw 19NAfem I1 001.fastq.gz,0:8 1:133,A:4656207219;C:3824531650;G:4322736498;T:4324676442;N:13273745,8,133,,,4656207219,3824531650,4322736498,4324676442,13273745,SRX4996867,SRS4031876,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,,,,,,,,,,,,T,B,sc-like readlen,illumina,nextseq,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,United States,2018-11-08,Larval,Larval,Gonad,Reproductive System
35501,SRR32847793,SRX28130287,SRS24485200,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 10 4,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:10 μg/L neburon 0.01% DMSO|replicate:replicate=biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 10 4,F0 10 4,neburon exposure,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_10_4_1.fq.gz F0_10_4_2.fq.gz,fastq fastq,6497409000.0,21658030.0,F0 10 4 1.fq.gz,0:150 1:150,A:1745298018;C:1515577060;G:1519077549;T:1717429364;N:27009,150,150,,,1745298018,1515577060,1519077549,1717429364,27009,SRX28130287,SRS24485200,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
35502,SRR32847794,SRX28130286,SRS24485199,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 10 3,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:10 μg/L neburon 0.01% DMSO|replicate:replicate=biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 10 3,F0 10 3,neburon exposure,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_10_3_1.fq.gz F0_10_3_2.fq.gz,fastq fastq,6705529200.0,22351764.0,F0 10 3 1.fq.gz,0:150 1:150,A:1797300651;C:1567445869;G:1568865064;T:1771896545;N:21071,150,150,,,1797300651,1567445869,1568865064,1771896545,21071,SRX28130286,SRS24485199,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
35503,SRR32847795,SRX28130285,SRS24485197,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 10 2,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:10 μg/L neburon 0.01% DMSO|replicate:replicate=biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 10 2,F0 10 2,neburon exposure,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_10_2_1.fq.gz F0_10_2_2.fq.gz,fastq fastq,6823369200.0,22744564.0,F0 10 2 1.fq.gz,0:150 1:150,A:1828401463;C:1587866904;G:1591331453;T:1815741011;N:28369,150,150,,,1828401463,1587866904,1591331453,1815741011,28369,SRX28130285,SRS24485197,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
35504,SRR32847796,SRX28130284,SRS24485198,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 10 1,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:10 μg/L neburon 0.01% DMSO|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 10 1,F0 10 1,neburon exposure,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_10_1_1.fq.gz F0_10_1_2.fq.gz,fastq fastq,6855193200.0,22850644.0,F0 10 1 1.fq.gz,0:150 1:150,A:1839056548;C:1598965863;G:1602365208;T:1814777552;N:28029,150,150,,,1839056548,1598965863,1602365208,1814777552,28029,SRX28130284,SRS24485198,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,2,0.93021,0.93183,0.02479,0.02475,0.75824,0.75751,0.48861,0.48782,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
35505,SRR32847797,SRX28130283,SRS24485196,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 0 4,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:Solvent control 0.01% DMSO|replicate:replicate=biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 0 4,F0 0 4,Solvent control,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_0_4_1.fq.gz F0_0_4_2.fq.gz,fastq fastq,6202510200.0,20675034.0,F0 0 4 1.fq.gz,0:150 1:150,A:1638935187;C:1475225232;G:1473642403;T:1614681504;N:25874,150,150,,,1638935187,1475225232,1473642403,1614681504,25874,SRX28130283,SRS24485196,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
35506,SRR32847798,SRX28130282,SRS24485195,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 0 3,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:Solvent control 0.01% DMSO|replicate:replicate=biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 0 3,F0 0 3,Solvent control,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_0_3_1.fq.gz F0_0_3_2.fq.gz,fastq fastq,6143312100.0,20477707.0,F0 0 3 1.fq.gz,0:150 1:150,A:1643045680;C:1434021639;G:1442426325;T:1623793440;N:25016,150,150,,,1643045680,1434021639,1442426325,1623793440,25016,SRX28130282,SRS24485195,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,2,0.93524,0.93689,0.02456,0.02453,0.76053,0.76023,0.49883,0.49923,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
35507,SRR32847799,SRX28130281,SRS24485194,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 0 2,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:Solvent control 0.01% DMSO|replicate:replicate=biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 0 2,F0 0 2,Solvent control,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_0_2_1.fq.gz F0_0_2_2.fq.gz,fastq fastq,6669509400.0,22231698.0,F0 0 2 1.fq.gz,0:150 1:150,A:1772820815;C:1570566452;G:1575974746;T:1750118680;N:28707,150,150,,,1772820815,1570566452,1575974746,1750118680,28707,SRX28130281,SRS24485194,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,2,0.92506,0.92548,0.02275,0.02262,0.76319,0.76299,0.48685,0.48655,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
35508,SRR32847800,SRX28130280,SRS24485193,SRP572931,PRJNA1241724,Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line,PRJNA1241724,Other,To explore the effect of neburon on the reproductive system of zebrafish females  four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.,,,,,F0 0 1,,strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:Solvent control 0.01% DMSO|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: adult female ovary,F0 0 1,F0 0 1,Solvent control,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP572931,,,F0_0_1_1.fq.gz F0_0_1_2.fq.gz,fastq fastq,6741448200.0,22471494.0,F0 0 1 1.fq.gz,0:150 1:150,A:1773536677;C:1594948330;G:1605028745;T:1767907203;N:27245,150,150,,,1773536677,1594948330,1605028745,1767907203,27245,SRX28130280,SRS24485193,SRA2099841,Xiamen University|School of Life Sciences,Xiamen University,2,0.88124,0.88271,0.02386,0.02384,0.76382,0.76351,0.48919,0.48949,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-03-25,Adult,Adult,Gonad,Reproductive System
40708,SRR3420428,SRX1660366,SRS1360334,SRP072296,PRJNA316313,Codon optimality and mRNA decay in zebrafish and Xenopus,PRJNA316313,Other,Cellular transitions require dramatic changes in gene expression that are supported by regulated mRNA decay and new transcription. The maternal to zygotic transition is a conserved developmental progression during which thousands of maternal mRNAs are cleared by posttranscriptional mechanisms. Although some maternal mRNAs are targeted for degradation by microRNAs  this pathway does not fully explain mRNA clearance. Because the ribosome constitutes the main ribonucleoprotein complex decoding the mRNA  we investigated how codon identity and translation affect mRNA stability during development and homeostasis. Using an in vivo selection strategy  we show that the codon triplet contains translation dependent regulatory information that influences transcript decay. We find that codon composition shapes maternal mRNA clearance during the maternal to zygotic transition in zebrafish  Xenopus  mouse and Drosophila  and gene expression during homeostasis across human tissues. Codon composition affects both polyadenylation status and translation efficiency. Thus  the ribosome interprets two codes within the mRNA  the genetic code which specifies the amino acid sequence  and a conserved “codon optimality code” that shapes mRNA stability and translation efficiency across vertebrates.,,,,,AG01296 testis,,strain:TUAB|age:adult|sex:pooled male and female|tissue:Testis|BioSampleModel:Model organism or animal,,,,,,,,,AG01296 testis,AG01296 testis,1,1,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,SINGLE,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>75</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP072296,,,AG01296_SEQ0273_R1.fastq.gz,fastq,708117840.0,9317340.0,AG01296 run 1,0:76,A:188728168;C:160744436;G:154540381;T:204071817;N:33038,76,,,,188728168,160744436,154540381,204071817,33038,SRX1660366,SRS1360334,SRA395141,Yale University|Giraldez Lab,Yale University,1,0.93648,,0.13514,,0.61302,,0.4884,,76,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2016-06-17,Adult,Adult,Gonad,Reproductive System
50606,SRR8176748,SRX4996875,SRS4031874,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Ovary RNA Seq,Nadia Ovary RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZW|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZW ovary 6,Nadia ovary 6,Nadia ovary 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,2526133546.0,15988187.0,ovary6 TGAACTGG S7 R1 001.fastq.gz,0:79 1:79,A:657355119;C:595457526;G:623921016;T:649336614;N:63271,79,79,,,657355119,595457526,623921016,649336614,63271,SRX4996875,SRS4031874,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84475,0.83339,0.04288,0.04092,0.75603,0.75919,0.50123,0.5057,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50607,SRR8176749,SRX4996874,SRS4031875,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Testis RNA Seq,Nadia Testis RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZZ|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZZ testis 11,Nadia testis 11,Nadia testis 11,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1721218820.0,10893790.0,testis11 TCGAGCGT S11 R1 001.fastq.gz,0:79 1:79,A:459108490;C:394396990;G:412251655;T:455420798;N:40887,79,79,,,459108490,394396990,412251655,455420798,40887,SRX4996874,SRS4031875,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83918,0.82807,0.15135,0.14675,0.65309,0.66011,0.53104,0.53739,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50608,SRR8176750,SRX4996873,SRS4031875,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Testis RNA Seq,Nadia Testis RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZZ|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZZ testis 12,Nadia testis 12,Nadia testis 12,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,2309548884.0,14617398.0,testis12 CGATGTTT S12 R1 001.fastq.gz,0:79 1:79,A:619255750;C:527718671;G:550854739;T:611664017;N:55707,79,79,,,619255750,527718671,550854739,611664017,55707,SRX4996873,SRS4031875,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83656,0.82559,0.1791,0.17626,0.67409,0.68103,0.54375,0.54735,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50609,SRR8176751,SRX4996872,SRS4031874,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Ovary RNA Seq,Nadia Ovary RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZW|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZW ovary 4,Nadia ovary 4,Nadia ovary 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1349110334.0,8538673.0,ovary4 TGAAGCCA S6 R1 001.fastq.gz,0:79 1:79,A:351675915;C:318327782;G:333254253;T:345819219;N:33165,79,79,,,351675915,318327782,333254253,345819219,33165,SRX4996872,SRS4031874,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.85194,0.84255,0.04389,0.04124,0.75759,0.76075,0.49459,0.48855,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50610,SRR8176752,SRX4996871,SRS4031875,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Testis RNA Seq,Nadia Testis RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZZ|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZZ testis 8,Nadia testis 8,Nadia testis 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1766900412.0,11182914.0,testis8 TCTGCTGT S9 R1 001.fastq.gz,0:79 1:79,A:472133204;C:404123547;G:423581171;T:467019329;N:43161,79,79,,,472133204,404123547,423581171,467019329,43161,SRX4996871,SRS4031875,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84005,0.8296,0.1457,0.14305,0.65675,0.66446,0.53125,0.52768,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50611,SRR8176755,SRX4996868,SRS4031874,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Ovary RNA Seq,Nadia Ovary RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZW|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZW ovary 3,Nadia ovary 3,Nadia ovary 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1092861036.0,6916842.0,ovary3 GGCTACAG S5 R1 001.fastq.gz,0:79 1:79,A:277743962;C:263618484;G:276634303;T:274839154;N:25133,79,79,,,277743962,263618484,276634303,274839154,25133,SRX4996868,SRS4031874,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.85299,0.84324,0.03814,0.03621,0.76128,0.76475,0.50823,0.50889,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50612,SRR8176757,SRX4996866,SRS4031875,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Testis RNA Seq,Nadia Testis RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZZ|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZZ testis 7,Nadia testis 7,Nadia testis 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1567584992.0,9921424.0,testis7 GTACATCT S8 R1 001.fastq.gz,0:79 1:79,A:418694817;C:358272212;G:375519309;T:415060203;N:38451,79,79,,,418694817,358272212,375519309,415060203,38451,SRX4996866,SRS4031875,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83978,0.83023,0.13806,0.13491,0.65906,0.66645,0.52399,0.53148,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50613,SRR8176758,SRX4996865,SRS4031875,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Testis RNA Seq,Nadia Testis RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZZ|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZZ testis 9,Nadia testis 9,Nadia testis 9,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1534697292.0,9713274.0,testis9 TAGCTTGT S10 R1 001.fastq.gz,0:79 1:79,A:412476407;C:348503407;G:364951260;T:408730135;N:36083,79,79,,,412476407,348503407,364951260,408730135,36083,SRX4996865,SRS4031875,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83138,0.82285,0.14758,0.14389,0.6574,0.66413,0.52953,0.52739,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50614,SRR8176759,SRX4996864,SRS4031874,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Ovary RNA Seq,Nadia Ovary RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZW|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZW ovary 1,Nadia ovary 1,Nadia ovary 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1071608456.0,6782332.0,ovary1 TTCTGTGT S3 R1 001.fastq.gz,0:79 1:79,A:274516983;C:256355100;G:269033426;T:271676618;N:26329,79,79,,,274516983,256355100,269033426,271676618,26329,SRX4996864,SRS4031874,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84619,0.84097,0.04695,0.04389,0.76067,0.76447,0.50582,0.50708,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
50615,SRR8176760,SRX4996863,SRS4031874,SRP168249,PRJNA504448,RNA Seq of Zebrafish Gonads from the Nadia Strain,PRJNA504448,Transcriptome Analysis,The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.,,pubmed:38466753,,Nadia Ovary RNA Seq,Nadia Ovary RNA Seq,,strain:Nadia|age:3 mpf provider:John H. Postlethwait  University of Oregon|genotype:ZW|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: Nadia ZW ovary 2,Nadia ovary 2,Nadia ovary 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP168249,,,,,1576311490.0,9976655.0,ovary2 TGCTGATA S4 R1 001.fastq.gz,0:79 1:79,A:405771336;C:375502214;G:393737952;T:401262052;N:37936,79,79,,,405771336,375502214,393737952,401262052,37936,SRX4996863,SRS4031874,SRA807619,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84668,0.83664,0.03988,0.03778,0.75818,0.76126,0.50397,0.51091,79,79,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2018-11-08,Adult,Adult,Gonad,Reproductive System
53430,SRR9875014,SRX6627775,SRS5187274,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT male ZZ 2,NA I LT male ZZ 2,NA I LT male ZZ 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_M_ZZ_2_S26_L003_R2_001.fastq.gz NA_I_LT_M_ZZ_2_S26_L003_R1_001.fastq.gz,fastq fastq,1172048410.0,3880955.0,NA I LT M ZZ 2 S26 L003 R1 001.fastq.gz,0:151 1:151,A:303777521;C:269121101;G:281279387;T:317654364;N:216037,151,151,,,303777521,269121101,281279387,317654364,216037,SRX6627775,SRS5187274,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83782,0.85031,0.12499,0.11617,0.66827,0.67779,0.48987,0.53823,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53431,SRR9875015,SRX6627774,SRS5187274,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT male ZZ 1,NA I LT male ZZ 1,NA I LT male ZZ 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_M_ZZ_1_S25_L003_R1_001.fastq.gz NA_I_LT_M_ZZ_1_S25_L003_R2_001.fastq.gz,fastq fastq,1262754714.0,4181307.0,NA I LT M ZZ 1 S25 L003 R1 001.fastq.gz,0:151 1:151,A:327506426;C:291427032;G:305046130;T:338544693;N:230433,151,151,,,327506426,291427032,305046130,338544693,230433,SRX6627774,SRS5187274,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84333,0.85309,0.11752,0.10767,0.6784,0.68952,0.49474,0.54244,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53432,SRR9875016,SRX6627773,SRS5187267,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT female ZW 4,NA I LT female ZW 4,NA I LT female ZW 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_F_ZW_4_S12_L003_R1_001.fastq.gz NA_I_LT_F_ZW_4_S12_L003_R2_001.fastq.gz,fastq fastq,3142658206.0,10406153.0,NA I LT F ZW 4 S12 L003 R1 001.fastq.gz,0:151 1:151,A:803643290;C:741672825;G:773732722;T:823029025;N:580344,151,151,,,803643290,741672825,773732722,823029025,580344,SRX6627773,SRS5187267,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.85445,0.8663,0.02726,0.02576,0.75077,0.75637,0.51842,0.53326,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53433,SRR9875017,SRX6627772,SRS5187267,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT female ZW 3,NA I LT female ZW 3,NA I LT female ZW 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_F_ZW_3_S11_L003_R1_001.fastq.gz NA_I_LT_F_ZW_3_S11_L003_R2_001.fastq.gz,fastq fastq,2972327186.0,9842143.0,NA I LT F ZW 3 S11 L003 R1 001.fastq.gz,0:151 1:151,A:772664996;C:682505738;G:712485622;T:804106200;N:564630,151,151,,,772664996,682505738,712485622,804106200,564630,SRX6627772,SRS5187267,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84597,0.85833,0.03181,0.03076,0.74667,0.75243,0.46115,0.54017,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53434,SRR9875018,SRX6627771,SRS5187273,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT neomale ZW 2,NA I LT neomale ZW 2,NA I LT neomale ZW 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_NM_ZW_2_S30_L003_R2_001.fastq.gz NA_I_LT_NM_ZW_2_S30_L003_R1_001.fastq.gz,fastq fastq,1388131524.0,4596462.0,NA I LT NM ZW 2 S30 L003 R1 001.fastq.gz,0:151 1:151,A:364448184;C:318113393;G:331439463;T:373875285;N:255199,151,151,,,364448184,318113393,331439463,373875285,255199,SRX6627771,SRS5187273,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83159,0.83772,0.11329,0.10386,0.66845,0.67971,0.43992,0.54354,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53435,SRR9875019,SRX6627770,SRS5187273,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT neomale ZW 1,NA I LT neomale ZW 1,NA I LT neomale ZW 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_NM_ZW_1_S29_L003_R1_001.fastq.gz NA_I_LT_NM_ZW_1_S29_L003_R2_001.fastq.gz,fastq fastq,1367141920.0,4526960.0,NA I LT NM ZW 1 S29 L003 R1 001.fastq.gz,0:151 1:151,A:355472353;C:315601966;G:328252816;T:367560010;N:254775,151,151,,,355472353,315601966,328252816,367560010,254775,SRX6627770,SRS5187273,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82721,0.83543,0.12314,0.11296,0.66168,0.66991,0.48974,0.54682,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53436,SRR9875020,SRX6627769,SRS5187274,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT male ZZ 4,NA I LT male ZZ 4,NA I LT male ZZ 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_M_ZZ_4_S28_L003_R1_001.fastq.gz NA_I_LT_M_ZZ_4_S28_L003_R2_001.fastq.gz,fastq fastq,1365836374.0,4522637.0,NA I LT M ZZ 4 S28 L003 R1 001.fastq.gz,0:151 1:151,A:359008023;C:311741908;G:325484573;T:369355002;N:246868,151,151,,,359008023,311741908,325484573,369355002,246868,SRX6627769,SRS5187274,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84371,0.85078,0.12305,0.11555,0.67099,0.68387,0.51573,0.55027,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53437,SRR9875021,SRX6627768,SRS5187274,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT male ZZ 3,NA I LT male ZZ 3,NA I LT male ZZ 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_M_ZZ_3_S27_L003_R2_001.fastq.gz NA_I_LT_M_ZZ_3_S27_L003_R1_001.fastq.gz,fastq fastq,3359129088.0,11122944.0,NA I LT M ZZ 3 S27 L003 R1 001.fastq.gz,0:151 1:151,A:886542415;C:762896281;G:795735380;T:913345561;N:609451,151,151,,,886542415,762896281,795735380,913345561,609451,SRX6627768,SRS5187274,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83447,0.83971,0.12934,0.12096,0.66434,0.67596,0.49873,0.54409,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53438,SRR9875022,SRX6627767,SRS5187273,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT neomale ZW 4,NA I LT neomale ZW 4,NA I LT neomale ZW 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_NM_ZW_4_S32_L003_R2_001.fastq.gz NA_I_LT_NM_ZW_4_S32_L003_R1_001.fastq.gz,fastq fastq,1571536426.0,5203763.0,NA I LT NM ZW 4 S32 L003 R1 001.fastq.gz,0:151 1:151,A:412349187;C:356867868;G:373811327;T:428220032;N:288012,151,151,,,412349187,356867868,373811327,428220032,288012,SRX6627767,SRS5187273,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84259,0.85116,0.11975,0.11158,0.6588,0.6733,0.49032,0.53195,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53439,SRR9875023,SRX6627766,SRS5187273,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT neomale ZW 3,NA I LT neomale ZW 3,NA I LT neomale ZW 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_NM_ZW_3_S31_L003_R1_001.fastq.gz NA_I_LT_NM_ZW_3_S31_L003_R2_001.fastq.gz,fastq fastq,708049268.0,2344534.0,NA I LT NM ZW 3 S31 L003 R1 001.fastq.gz,0:151 1:151,A:187682393;C:160644598;G:167023665;T:192569320;N:129292,151,151,,,187682393,160644598,167023665,192569320,129292,SRX6627766,SRS5187273,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83306,0.8307,0.10791,0.09912,0.66736,0.68075,0.44399,0.52942,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53440,SRR9875024,SRX6627765,SRS5187264,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT neomale ZW 1,NA II HT neomale ZW 1,NA II HT neomale ZW 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZW_1_S49_L003_R1_001.fastq.gz NA_II_HT_M_ZW_1_S49_L003_R2_001.fastq.gz,fastq fastq,866947776.0,2870688.0,NA II HT M ZW 1 S49 L003 R1 001.fastq.gz,0:151 1:151,A:231683021;C:191944405;G:199270471;T:243895438;N:154441,151,151,,,231683021,191944405,199270471,243895438,154441,SRX6627765,SRS5187264,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.81935,0.8315,0.11248,0.10853,0.66362,0.68254,0.48789,0.52559,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53441,SRR9875025,SRX6627764,SRS5187264,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT neomale ZW 2,NA II HT neomale ZW 2,NA II HT neomale ZW 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZW_2_S50_L003_R1_001.fastq.gz NA_II_HT_M_ZW_2_S50_L003_R2_001.fastq.gz,fastq fastq,1238622196.0,4101398.0,NA II HT M ZW 2 S50 L003 R1 001.fastq.gz,0:151 1:151,A:326765637;C:281525180;G:292771467;T:337327822;N:232090,151,151,,,326765637,281525180,292771467,337327822,232090,SRX6627764,SRS5187264,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.81744,0.81778,0.1321,0.11944,0.6715,0.68061,0.48308,0.5461,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53442,SRR9875026,SRX6627763,SRS5187271,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35231 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35231|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 3,NA II HT female ZW 3,NA II HT female ZW 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_3_S19_L003_R1_001.fastq.gz NA_II_HT_F_ZW_3_S19_L003_R2_001.fastq.gz,fastq fastq,4332789470.0,14346985.0,NA II HT F ZW 3 S19 L003 R1 001.fastq.gz,0:151 1:151,A:1121567479;C:1001393901;G:1051112515;T:1157922069;N:793506,151,151,,,1121567479,1001393901,1051112515,1157922069,793506,SRX6627763,SRS5187271,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84537,0.85684,0.02978,0.02883,0.74519,0.75103,0.49815,0.51029,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53443,SRR9875027,SRX6627762,SRS5187271,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35231 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35231|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 4,NA II HT female ZW 4,NA II HT female ZW 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_4_S20_L003_R1_001.fastq.gz NA_II_HT_F_ZW_4_S20_L003_R2_001.fastq.gz,fastq fastq,2504902760.0,8294380.0,NA II HT F ZW 4 S20 L003 R1 001.fastq.gz,0:151 1:151,A:644063437;C:585139726;G:612494174;T:662732706;N:472717,151,151,,,644063437,585139726,612494174,662732706,472717,SRX6627762,SRS5187271,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84081,0.85447,0.02676,0.02539,0.75221,0.75735,0.50871,0.52577,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53444,SRR9875028,SRX6627761,SRS5187272,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 1,NA II HT female ZW 1,NA II HT female ZW 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_1_S17_L003_R2_001.fastq.gz NA_II_HT_F_ZW_1_S17_L003_R1_001.fastq.gz,fastq fastq,1736596036.0,5750318.0,NA II HT F ZW 1 S17 L003 R1 001.fastq.gz,0:151 1:151,A:445448229;C:406499984;G:426338448;T:458000590;N:308785,151,151,,,445448229,406499984,426338448,458000590,308785,SRX6627761,SRS5187272,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83645,0.84885,0.02338,0.02377,0.76181,0.77179,0.50147,0.51518,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53445,SRR9875029,SRX6627760,SRS5187271,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35231 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35231|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 2,NA II HT female ZW 2,NA II HT female ZW 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_2_S18_L003_R1_001.fastq.gz NA_II_HT_F_ZW_2_S18_L003_R2_001.fastq.gz,fastq fastq,2236262284.0,7404842.0,NA II HT F ZW 2 S18 L003 R1 001.fastq.gz,0:151 1:151,A:579456096;C:517791260;G:542824435;T:595784792;N:405701,151,151,,,579456096,517791260,542824435,595784792,405701,SRX6627760,SRS5187271,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84842,0.86331,0.03018,0.02879,0.74533,0.75284,0.50735,0.5179,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53446,SRR9875030,SRX6627759,SRS5187270,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35233 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35233|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 7,NA II HT female ZW 7,NA II HT female ZW 7,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_7_S23_L003_R1_001.fastq.gz NA_II_HT_F_ZW_7_S23_L003_R2_001.fastq.gz,fastq fastq,4374023644.0,14483522.0,NA II HT F ZW 7 S23 L003 R1 001.fastq.gz,0:151 1:151,A:1124428490;C:1022998262;G:1067040224;T:1158743925;N:812743,151,151,,,1124428490,1022998262,1067040224,1158743925,812743,SRX6627759,SRS5187270,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84531,0.85451,0.02933,0.02831,0.74781,0.75268,0.50283,0.51946,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53447,SRR9875031,SRX6627758,SRS5187270,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35233 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35233|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 8,NA II HT female ZW 8,NA II HT female ZW 8,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_8_S24_L003_R1_001.fastq.gz NA_II_HT_F_ZW_8_S24_L003_R2_001.fastq.gz,fastq fastq,2254992022.0,7466861.0,NA II HT F ZW 8 S24 L003 R1 001.fastq.gz,0:151 1:151,A:572485761;C:532768891;G:559608333;T:589709152;N:419885,151,151,,,572485761,532768891,559608333,589709152,419885,SRX6627758,SRS5187270,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83569,0.84924,0.03057,0.02989,0.75566,0.76039,0.49404,0.50869,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53448,SRR9875032,SRX6627757,SRS5187270,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35233 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35233|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 5,NA II HT female ZW 5,NA II HT female ZW 5,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_5_S21_L003_R2_001.fastq.gz NA_II_HT_F_ZW_5_S21_L003_R1_001.fastq.gz,fastq fastq,2724335054.0,9020977.0,NA II HT F ZW 5 S21 L003 R1 001.fastq.gz,0:151 1:151,A:703079271;C:633677990;G:664164772;T:722907914;N:505107,151,151,,,703079271,633677990,664164772,722907914,505107,SRX6627757,SRS5187270,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83901,0.84962,0.0312,0.03084,0.74105,0.74653,0.50721,0.52334,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53449,SRR9875033,SRX6627756,SRS5187270,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35233 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35233|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT female ZW 6,NA II HT female ZW 6,NA II HT female ZW 6,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_F_ZW_6_S22_L003_R1_001.fastq.gz NA_II_HT_F_ZW_6_S22_L003_R2_001.fastq.gz,fastq fastq,2606443616.0,8630608.0,NA II HT F ZW 6 S22 L003 R1 001.fastq.gz,0:151 1:151,A:673760471;C:606196676;G:634265991;T:691738470;N:482008,151,151,,,673760471,606196676,634265991,691738470,482008,SRX6627756,SRS5187270,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84587,0.85525,0.03449,0.03295,0.74172,0.74748,0.51773,0.53608,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53450,SRR9875034,SRX6627755,SRS5187269,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT neomale ZW 1,NA II LT neomale ZW 1,NA II LT neomale ZW 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZW_1_S33_L003_R1_001.fastq.gz NA_II_LT_M_ZW_1_S33_L003_R2_001.fastq.gz,fastq fastq,1357711366.0,4495733.0,NA II LT M ZW 1 S33 L003 R1 001.fastq.gz,0:151 1:151,A:358839496;C:303639822;G:318677702;T:376311671;N:242675,151,151,,,358839496,303639822,318677702,376311671,242675,SRX6627755,SRS5187269,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82749,0.84168,0.10104,0.09776,0.66665,0.67706,0.50176,0.52822,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53451,SRR9875035,SRX6627754,SRS5187269,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT neomale ZW 2,NA II LT neomale ZW 2,NA II LT neomale ZW 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZW_2_S34_L003_R1_001.fastq.gz NA_II_LT_M_ZW_2_S34_L003_R2_001.fastq.gz,fastq fastq,1079038148.0,3572974.0,NA II LT M ZW 2 S34 L003 R1 001.fastq.gz,0:151 1:151,A:284225595;C:242609321;G:252807823;T:299195973;N:199436,151,151,,,284225595,242609321,252807823,299195973,199436,SRX6627754,SRS5187269,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8249,0.83852,0.12503,0.1145,0.66787,0.67907,0.49177,0.54123,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53452,SRR9875036,SRX6627753,SRS5187269,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT neomale ZW 3,NA II LT neomale ZW 3,NA II LT neomale ZW 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZW_3_S35_L003_R2_001.fastq.gz NA_II_LT_M_ZW_3_S35_L003_R1_001.fastq.gz,fastq fastq,2282644350.0,7558425.0,NA II LT M ZW 3 S35 L003 R1 001.fastq.gz,0:151 1:151,A:607545184;C:507924138;G:532513071;T:634242294;N:419663,151,151,,,607545184,507924138,532513071,634242294,419663,SRX6627753,SRS5187269,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.81283,0.8258,0.11617,0.1097,0.65689,0.66569,0.49773,0.52947,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53453,SRR9875037,SRX6627752,SRS5187269,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT neomale ZW 4,NA II LT neomale ZW 4,NA II LT neomale ZW 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZW_4_S36_L003_R1_001.fastq.gz NA_II_LT_M_ZW_4_S36_L003_R2_001.fastq.gz,fastq fastq,2086507430.0,6908965.0,NA II LT M ZW 4 S36 L003 R1 001.fastq.gz,0:151 1:151,A:538604539;C:480340952;G:499613332;T:567569684;N:378923,151,151,,,538604539,480340952,499613332,567569684,378923,SRX6627752,SRS5187269,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83381,0.84464,0.12553,0.11185,0.66346,0.6743,0.48592,0.54627,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53454,SRR9875038,SRX6627751,SRS5187268,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT male ZZ 1,NA II LT male ZZ 1,NA II LT male ZZ 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZZ_1_S37_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_1_S37_L003_R2_001.fastq.gz,fastq fastq,3125472896.0,10349248.0,NA II LT M ZZ 1 S37 L003 R1 001.fastq.gz,0:151 1:151,A:826449700;C:708899305;G:733394083;T:856152498;N:577310,151,151,,,826449700,708899305,733394083,856152498,577310,SRX6627751,SRS5187268,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82658,0.83272,0.12623,0.1163,0.65756,0.66722,0.48097,0.53128,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53455,SRR9875039,SRX6627750,SRS5187268,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT male ZZ 2,NA II LT male ZZ 2,NA II LT male ZZ 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZZ_2_S38_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_2_S38_L003_R2_001.fastq.gz,fastq fastq,2054902526.0,6804313.0,NA II LT M ZZ 2 S38 L003 R1 001.fastq.gz,0:151 1:151,A:531226544;C:477661282;G:496881812;T:548754535;N:378353,151,151,,,531226544,477661282,496881812,548754535,378353,SRX6627750,SRS5187268,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82889,0.83299,0.12553,0.112,0.67231,0.67963,0.48585,0.55425,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53456,SRR9875040,SRX6627749,SRS5187268,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT male ZZ 3,NA II LT male ZZ 3,NA II LT male ZZ 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZZ_3_S39_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_3_S39_L003_R2_001.fastq.gz,fastq fastq,2114157946.0,7000523.0,NA II LT M ZZ 3 S39 L003 R1 001.fastq.gz,0:151 1:151,A:550987311;C:480876975;G:502310453;T:579594583;N:388624,151,151,,,550987311,480876975,502310453,579594583,388624,SRX6627749,SRS5187268,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.81833,0.8296,0.11739,0.10808,0.67182,0.67844,0.48149,0.5418,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53457,SRR9875041,SRX6627748,SRS5187268,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT male ZZ 4,NA II LT male ZZ 4,NA II LT male ZZ 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_M_ZZ_4_S40_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_4_S40_L003_R2_001.fastq.gz,fastq fastq,1495067308.0,4950554.0,NA II LT M ZZ 4 S40 L003 R1 001.fastq.gz,0:151 1:151,A:390009825;C:338696774;G:352130264;T:413947694;N:282751,151,151,,,390009825,338696774,352130264,413947694,282751,SRX6627748,SRS5187268,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8249,0.84026,0.10326,0.09647,0.6729,0.68176,0.49745,0.53215,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53458,SRR9875042,SRX6627747,SRS5187267,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT female ZW 2,NA I LT female ZW 2,NA I LT female ZW 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_F_ZW_2_S10_L003_R1_001.fastq.gz NA_I_LT_F_ZW_2_S10_L003_R2_001.fastq.gz,fastq fastq,3034833334.0,10049117.0,NA I LT F ZW 2 S10 L003 R1 001.fastq.gz,0:151 1:151,A:774988052;C:708380465;G:741374235;T:809523019;N:567563,151,151,,,774988052,708380465,741374235,809523019,567563,SRX6627747,SRS5187267,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8428,0.85733,0.02408,0.02325,0.7502,0.75444,0.50904,0.52136,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53459,SRR9875043,SRX6627746,SRS5187267,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S32366 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I LT female ZW 1,NA I LT female ZW 1,NA I LT female ZW 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_LT_F_ZW_1_S9_L003_R1_001.fastq.gz NA_I_LT_F_ZW_1_S9_L003_R2_001.fastq.gz,fastq fastq,2125350972.0,7037586.0,NA I LT F ZW 1 S9 L003 R1 001.fastq.gz,0:151 1:151,A:545614513;C:497333512;G:519240116;T:562771287;N:391544,151,151,,,545614513,497333512,519240116,562771287,391544,SRX6627746,SRS5187267,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82461,0.83743,0.02141,0.02062,0.75394,0.7595,0.48916,0.51164,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53460,SRR9875044,SRX6627745,SRS5187266,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT neomale ZW 2,NA I HT neomale ZW 2,NA I HT neomale ZW 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZW_2_S46_L003_R1_001.fastq.gz NA_I_HT_M_ZW_2_S46_L003_R2_001.fastq.gz,fastq fastq,1806321494.0,5981197.0,NA I HT M ZW 2 S46 L003 R1 001.fastq.gz,0:151 1:151,A:475635210;C:409795334;G:421841520;T:498713602;N:335828,151,151,,,475635210,409795334,421841520,498713602,335828,SRX6627745,SRS5187266,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84633,0.85265,0.11305,0.10352,0.66949,0.67988,0.51289,0.54556,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53461,SRR9875045,SRX6627744,SRS5187266,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT neomale ZW 1,NA I HT neomale ZW 1,NA I HT neomale ZW 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZW_1_S45_L003_R1_001.fastq.gz NA_I_HT_M_ZW_1_S45_L003_R2_001.fastq.gz,fastq fastq,1785467186.0,5912143.0,NA I HT M ZW 1 S45 L003 R1 001.fastq.gz,0:151 1:151,A:458130008;C:419048292;G:433123403;T:474834704;N:330779,151,151,,,458130008,419048292,433123403,474834704,330779,SRX6627744,SRS5187266,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82063,0.82213,0.10291,0.09434,0.67292,0.68302,0.49008,0.54662,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53462,SRR9875046,SRX6627743,SRS5187266,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT neomale ZW 4,NA I HT neomale ZW 4,NA I HT neomale ZW 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZW_4_S48_L003_R2_001.fastq.gz NA_I_HT_M_ZW_4_S48_L003_R1_001.fastq.gz,fastq fastq,1721739146.0,5701123.0,NA I HT M ZW 4 S48 L003 R1 001.fastq.gz,0:151 1:151,A:457579053;C:387246239;G:402046929;T:474553811;N:313114,151,151,,,457579053,387246239,402046929,474553811,313114,SRX6627743,SRS5187266,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83132,0.84076,0.10303,0.09716,0.67278,0.67971,0.51397,0.54201,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53463,SRR9875047,SRX6627742,SRS5187266,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT neomale ZW 3,NA I HT neomale ZW 3,NA I HT neomale ZW 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZW_3_S47_L003_R1_001.fastq.gz NA_I_HT_M_ZW_3_S47_L003_R2_001.fastq.gz,fastq fastq,1864038224.0,6172312.0,NA I HT M ZW 3 S47 L003 R1 001.fastq.gz,0:151 1:151,A:488182037;C:418744893;G:435328272;T:521434960;N:348062,151,151,,,488182037,418744893,435328272,521434960,348062,SRX6627742,SRS5187266,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82491,0.84075,0.10296,0.09613,0.67032,0.67939,0.4924,0.5357,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53464,SRR9875048,SRX6627741,SRS5187265,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT male ZZ 2,NA I HT male ZZ 2,NA I HT male ZZ 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZZ_2_S42_L003_R2_001.fastq.gz NA_I_HT_M_ZZ_2_S42_L003_R1_001.fastq.gz,fastq fastq,2056499200.0,6809600.0,NA I HT M ZZ 2 S42 L003 R1 001.fastq.gz,0:151 1:151,A:538336279;C:472717996;G:488512293;T:556554652;N:377980,151,151,,,538336279,472717996,488512293,556554652,377980,SRX6627741,SRS5187265,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83126,0.84204,0.107,0.10077,0.67073,0.67831,0.49524,0.53134,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53465,SRR9875049,SRX6627740,SRS5187265,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT male ZZ 1,NA I HT male ZZ 1,NA I HT male ZZ 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZZ_1_S41_L003_R1_001.fastq.gz NA_I_HT_M_ZZ_1_S41_L003_R2_001.fastq.gz,fastq fastq,1365412366.0,4521233.0,NA I HT M ZZ 1 S41 L003 R1 001.fastq.gz,0:151 1:151,A:355480646;C:309546887;G:320575933;T:379562206;N:246694,151,151,,,355480646,309546887,320575933,379562206,246694,SRX6627740,SRS5187265,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83473,0.84725,0.10882,0.10201,0.66421,0.6762,0.50362,0.53357,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53466,SRR9875050,SRX6627739,SRS5187265,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT male ZZ 4,NA I HT male ZZ 4,NA I HT male ZZ 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZZ_4_S44_L003_R1_001.fastq.gz NA_I_HT_M_ZZ_4_S44_L003_R2_001.fastq.gz,fastq fastq,2913929748.0,9648774.0,NA I HT M ZZ 4 S44 L003 R1 001.fastq.gz,0:151 1:151,A:754611935;C:673613964;G:694334777;T:790819457;N:549615,151,151,,,754611935,673613964,694334777,790819457,549615,SRX6627739,SRS5187265,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84367,0.849,0.09149,0.08242,0.67207,0.68022,0.49473,0.54294,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53467,SRR9875051,SRX6627738,SRS5187265,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S32366 36C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:36°C|Stock:S32366|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA I HT male ZZ 3,NA I HT male ZZ 3,NA I HT male ZZ 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_I_HT_M_ZZ_3_S43_L003_R1_001.fastq.gz NA_I_HT_M_ZZ_3_S43_L003_R2_001.fastq.gz,fastq fastq,1847515804.0,6117602.0,NA I HT M ZZ 3 S43 L003 R1 001.fastq.gz,0:151 1:151,A:482681863;C:418051930;G:432751376;T:513690111;N:340524,151,151,,,482681863,418051930,432751376,513690111,340524,SRX6627738,SRS5187265,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83211,0.842,0.10026,0.09236,0.67211,0.68093,0.49535,0.53213,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53468,SRR9875052,SRX6627737,SRS5187262,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT female ZW 4,NA II LT female ZW 4,NA II LT female ZW 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_F_ZW_4_S16_L003_R1_001.fastq.gz NA_II_LT_F_ZW_4_S16_L003_R2_001.fastq.gz,fastq fastq,3220410824.0,10663612.0,NA II LT F ZW 4 S16 L003 R1 001.fastq.gz,0:151 1:151,A:821518938;C:761183396;G:793393852;T:843716812;N:597826,151,151,,,821518938,761183396,793393852,843716812,597826,SRX6627737,SRS5187262,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8413,0.85256,0.02501,0.0238,0.74966,0.75556,0.50159,0.52008,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53469,SRR9875053,SRX6627736,SRS5187262,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT female ZW 3,NA II LT female ZW 3,NA II LT female ZW 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_F_ZW_3_S15_L003_R1_001.fastq.gz NA_II_LT_F_ZW_3_S15_L003_R2_001.fastq.gz,fastq fastq,2845167066.0,9421083.0,NA II LT F ZW 3 S15 L003 R1 001.fastq.gz,0:151 1:151,A:728473162;C:665785810;G:698014630;T:752369136;N:524328,151,151,,,728473162,665785810,698014630,752369136,524328,SRX6627736,SRS5187262,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84878,0.86228,0.02745,0.02607,0.75191,0.75769,0.50354,0.52065,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53470,SRR9875054,SRX6627735,SRS5187264,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT neomale ZW 4,NA II HT neomale ZW 4,NA II HT neomale ZW 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZW_4_S52_L003_R1_001.fastq.gz NA_II_HT_M_ZW_4_S52_L003_R2_001.fastq.gz,fastq fastq,1748851196.0,5790898.0,NA II HT M ZW 4 S52 L003 R1 001.fastq.gz,0:151 1:151,A:453103739;C:399124717;G:415809420;T:480488752;N:324568,151,151,,,453103739,399124717,415809420,480488752,324568,SRX6627735,SRS5187264,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82727,0.84009,0.12956,0.11808,0.67209,0.68241,0.48691,0.54595,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53471,SRR9875055,SRX6627734,SRS5187264,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA neomale S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT neomale ZW 3,NA II HT neomale ZW 3,NA II HT neomale ZW 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZW_3_S51_L003_R1_001.fastq.gz NA_II_HT_M_ZW_3_S51_L003_R2_001.fastq.gz,fastq fastq,1423809804.0,4714602.0,NA II HT M ZW 3 S51 L003 R1 001.fastq.gz,0:151 1:151,A:369849507;C:327636581;G:340380495;T:385675721;N:267500,151,151,,,369849507,327636581,340380495,385675721,267500,SRX6627734,SRS5187264,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.83684,0.84439,0.1337,0.11897,0.67071,0.67923,0.47897,0.5467,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53472,SRR9875056,SRX6627733,SRS5187263,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT male ZZ 2,NA II HT male ZZ 2,NA II HT male ZZ 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZZ_2_S54_L003_R2_001.fastq.gz NA_II_HT_M_ZZ_2_S54_L003_R1_001.fastq.gz,fastq fastq,1357808308.0,4496054.0,NA II HT M ZZ 2 S54 L003 R1 001.fastq.gz,0:151 1:151,A:368185082;C:300053394;G:309250883;T:380079888;N:239061,151,151,,,368185082,300053394,309250883,380079888,239061,SRX6627733,SRS5187263,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82938,0.83196,0.15304,0.14574,0.65527,0.68789,0.49161,0.5465,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53473,SRR9875057,SRX6627732,SRS5187263,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT male ZZ 1,NA II HT male ZZ 1,NA II HT male ZZ 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZZ_1_S53_L003_R1_001.fastq.gz NA_II_HT_M_ZZ_1_S53_L003_R2_001.fastq.gz,fastq fastq,1634133174.0,5411037.0,NA II HT M ZZ 1 S53 L003 R1 001.fastq.gz,0:151 1:151,A:436483988;C:366023166;G:381257189;T:450055228;N:313603,151,151,,,436483988,366023166,381257189,450055228,313603,SRX6627732,SRS5187263,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.79603,0.79505,0.11794,0.10877,0.66318,0.66994,0.44714,0.53953,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53474,SRR9875058,SRX6627731,SRS5187263,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT male ZZ 4,NA II HT male ZZ 4,NA II HT male ZZ 4,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZZ_4_S56_L003_R2_001.fastq.gz NA_II_HT_M_ZZ_4_S56_L003_R1_001.fastq.gz,fastq fastq,1883910730.0,6238115.0,NA II HT M ZZ 4 S56 L003 R1 001.fastq.gz,0:151 1:151,A:495423095;C:424615591;G:443714130;T:519807712;N:350202,151,151,,,495423095,424615591,443714130,519807712,350202,SRX6627731,SRS5187263,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8286,0.83747,0.11822,0.11035,0.67385,0.68237,0.49035,0.52038,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53475,SRR9875059,SRX6627730,SRS5187263,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA male S35232 34C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:male|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZZ|treatment:34°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II HT male ZZ 3,NA II HT male ZZ 3,NA II HT male ZZ 3,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_HT_M_ZZ_3_S55_L003_R1_001.fastq.gz NA_II_HT_M_ZZ_3_S55_L003_R2_001.fastq.gz,fastq fastq,2340416648.0,7749724.0,NA II HT M ZZ 3 S55 L003 R1 001.fastq.gz,0:151 1:151,A:613484653;C:531562814;G:551930055;T:643006924;N:432202,151,151,,,613484653,531562814,551930055,643006924,432202,SRX6627730,SRS5187263,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.82905,0.83646,0.12739,0.11633,0.66687,0.67675,0.47544,0.52774,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53476,SRR9875060,SRX6627729,SRS5187262,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT female ZW 2,NA II LT female ZW 2,NA II LT female ZW 2,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_F_ZW_2_S14_L003_R1_001.fastq.gz NA_II_LT_F_ZW_2_S14_L003_R2_001.fastq.gz,fastq fastq,3634056298.0,12033299.0,NA II LT F ZW 2 S14 L003 R1 001.fastq.gz,0:151 1:151,A:931115370;C:854959901;G:890343355;T:956948734;N:688938,151,151,,,931115370,854959901,890343355,956948734,688938,SRX6627729,SRS5187262,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.8473,0.85879,0.03289,0.03091,0.74442,0.74953,0.50941,0.52493,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
53477,SRR9875061,SRX6627728,SRS5187262,SRP216974,PRJNA557435,RNA seq of Danio rerio gonads exposed to elevated temperature during development,PRJNA557435,Transcriptome Analysis,Zebrafish of the Nadia strain were raised at 28.5°C  34°C  or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.,,,,,NA female S35232 28C,,strain:Nadia|age:90 dpf|dev stage:adult|sex:female|tissue:gonad|biomaterial provider:John H. Postlethwait  University of Oregon|genotype:ZW|treatment:28°C|Stock:S35232|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: NA II LT female ZW 1,NA II LT female ZW 1,NA II LT female ZW 1,Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP216974,,,NA_II_LT_F_ZW_1_S13_L003_R1_001.fastq.gz NA_II_LT_F_ZW_1_S13_L003_R2_001.fastq.gz,fastq fastq,2455418852.0,8130526.0,NA II LT F ZW 1 S13 L003 R1 001.fastq.gz,0:151 1:151,A:623606538;C:582997106;G:608663760;T:639692291;N:459157,151,151,,,623606538,582997106,608663760,639692291,459157,SRX6627728,SRS5187262,SRA929643,University of Oregon|Institute of Neuroscience,University of Oregon,2,0.84721,0.8574,0.02968,0.02825,0.75022,0.75574,0.51102,0.52174,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2019-07-31,Adult,Adult,Gonad,Reproductive System
70107,SRR19561927,SRX15614023,SRS13314708,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr27 2,Dr27 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 7 27 2 ovary,7 27 2 ovary,7 27 2 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6007 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,7-27-2-ovary-RNA_R1.fq.gz 7-27-2-ovary-RNA_R2.fq.gz,fastq fastq,6966496500.0,23221655.0,7 27 2 ovary RNA R1.fq.gz,0:150 1:150,A:1784852772;C:1676888545;G:1685222280;T:1819390747;N:142156,150,150,,,1784852772,1676888545,1685222280,1819390747,142156,SRX15614023,SRS13314708,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.93216,0.93055,0.01749,0.01668,0.75471,0.75726,0.4877,0.48889,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70114,SRR19561934,SRX15614016,SRS13314715,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr13 3,Dr13 3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 42 13 3 ovary,42 13 3 ovary,42 13 3 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6049 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,42-13-3-ovary-RNA_R1.fq.gz 42-13-3-ovary-RNA_R2.fq.gz,fastq fastq,8315953800.0,27719846.0,42 13 3 ovary RNA R1.fq.gz,0:150 1:150,A:2113845666;C:2013021948;G:2030561324;T:2158373576;N:151286,150,150,,,2113845666,2013021948,2030561324,2158373576,151286,SRX15614016,SRS13314715,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.9325,0.93211,0.01498,0.01482,0.75627,0.76163,0.4678,0.46603,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70120,SRR19561940,SRX15614010,SRS13314714,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr13 2,Dr13 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 37 13 2 ovary,37 13 2 ovary,37 13 2 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6043 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,37-13-2-ovary-RNA_R1.fq.gz 37-13-2-ovary-RNA_R2.fq.gz,fastq fastq,10671303300.0,35571011.0,37 13 2 ovary RNA R1.fq.gz,0:150 1:150,A:2704549797;C:2589885874;G:2606829122;T:2769845305;N:193202,150,150,,,2704549797,2589885874,2606829122,2769845305,193202,SRX15614010,SRS13314714,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.9364,0.934,0.01462,0.01457,0.75609,0.76128,0.4657,0.47185,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70127,SRR19561947,SRX15614003,SRS13314713,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr13 1,Dr13 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 32 13 1 ovary,32 13 1 ovary,32 13 1 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6037 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,32-13-1-ovary-RNA_R1.fq.gz 32-13-1-ovary-RNA_R2.fq.gz,fastq fastq,7793077200.0,25976924.0,32 13 1 ovary RNA R1.fq.gz,0:150 1:150,A:1968202669;C:1898498061;G:1904799202;T:2021425841;N:151427,150,150,,,1968202669,1898498061,1904799202,2021425841,151427,SRX15614003,SRS13314713,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.93599,0.9342,0.01657,0.01693,0.75189,0.75599,0.47812,0.47528,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70133,SRR19561953,SRX15613997,SRS13314712,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr18 3,Dr18 3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 27 18 3 ovary,27 18 3 ovary,27 18 3 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6031 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,27-18-3-ovary-RNA_R1.fq.gz 27-18-3-ovary-RNA_R2.fq.gz,fastq fastq,7124234400.0,23747448.0,27 18 3 ovary RNA R1.fq.gz,0:150 1:150,A:1796883339;C:1737042072;G:1753365220;T:1836804245;N:139524,150,150,,,1796883339,1737042072,1753365220,1836804245,139524,SRX15613997,SRS13314712,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.93502,0.93824,0.01518,0.01539,0.75047,0.75383,0.47032,0.46666,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70140,SRR19561960,SRX15613990,SRS13314711,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr18 2,Dr18 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 22 18 2 ovary,22 18 2 ovary,22 18 2 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6025 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,22-18-2-ovary-RNA_R1.fq.gz 22-18-2-ovary-RNA_R2.fq.gz,fastq fastq,7099932300.0,23666441.0,22 18 2 ovary RNA R1.fq.gz,0:150 1:150,A:1797931340;C:1723404082;G:1743428459;T:1835029062;N:139357,150,150,,,1797931340,1723404082,1743428459,1835029062,139357,SRX15613990,SRS13314711,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.93288,0.93529,0.01597,0.01626,0.7539,0.75808,0.46947,0.47752,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70147,SRR19561967,SRX15613983,SRS13314710,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr18 1,Dr18 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 17 18 1 ovary,17 18 1 ovary,17 18 1 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6019 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,17-18-1-ovary-RNA_R1.fq.gz 17-18-1-ovary-RNA_R2.fq.gz,fastq fastq,8008588200.0,26695294.0,17 18 1 ovary RNA R1.fq.gz,0:150 1:150,A:2021818549;C:1946471492;G:1957729236;T:2082410352;N:158571,150,150,,,2021818549,1946471492,1957729236,2082410352,158571,SRX15613983,SRS13314710,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.93122,0.92495,0.01366,0.01312,0.75609,0.76128,0.47394,0.4716,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70153,SRR19561973,SRX15613977,SRS13314709,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr27 3,Dr27 3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 12 27 3 ovary,12 27 3 ovary,12 27 3 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6013 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,12-27-3-ovary-RNA_R1.fq.gz 12-27-3-ovary-RNA_R2.fq.gz,fastq fastq,7533353100.0,25111177.0,12 27 3 ovary RNA R1.fq.gz,0:150 1:150,A:1907565137;C:1829000535;G:1846316394;T:1950319115;N:151919,150,150,,,1907565137,1829000535,1846316394,1950319115,151919,SRX15613977,SRS13314709,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.93863,0.93775,0.01361,0.01336,0.75501,0.75854,0.4667,0.47208,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
70157,SRR19561977,SRX15613973,SRS13314707,SRP378802,PRJNA846110,Danio rerio Raw sequence reads,PRJNA846110,Other,Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio,,,,Dr27 1,Dr27 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: adult female 2 27 1 ovary,2 27 1 ovary,2 27 1 ovary,All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2  Vazyme Biotech Co.  Ltd  NR612 02  and subjected to 150bp paired end sequencing on a Novaseq 6001 illumina platform.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP378802,,,2-27-1-ovary-RNA_R1.fq.gz 2-27-1-ovary-RNA_R2.fq.gz,fastq fastq,7210844100.0,24036147.0,2 27 1 ovary RNA R1.fq.gz,0:150 1:150,A:1833886811;C:1743095370;G:1761088965;T:1872626910;N:146044,150,150,,,1833886811,1743095370,1761088965,1872626910,146044,SRX15613973,SRS13314707,SRA1432943,shanghai ocean university|College of Fisheries and Life Science,shanghai ocean university,2,0.93275,0.93077,0.01644,0.01637,0.75284,0.75619,0.47261,0.47523,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-06-07,Adult,Adult,Gonad,Reproductive System
77261,SRR25434203,SRX21168298,SRS18429832,SRP451673,PRJNA999043,The transcription analysis of gonad in zebrafish,PRJNA999043,Other,To screen out the female biased genes,,,,,dmrt / 2,,isolate:not applicable|age:80days|dev stage:Adult|collection date:2021|geo loc name:China:Wuhan|sex:female|tissue:Gonad|replicate:replicate = biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of gonad,dmrt2,dmrt2,screen out the key genes,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP451673,,,dmrt2_R1_.fastq.gz dmrt2_R2.fastq.gz,fastq fastq,5751045000.0,19170150.0,dmrt2 R1 .fastq.gz,0:150 1:150,A:1488645455;C:1371887358;G:1405356847;T:1485112991;N:42349,150,150,,,1488645455,1371887358,1405356847,1485112991,42349,SRX21168298,SRS18429832,SRA1681175,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.91589,0.91745,0.01703,0.01705,0.7637,0.76402,0.47113,0.46945,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-07-27,Multi-stage,Multi-stage,Gonad,Reproductive System
77262,SRR25434204,SRX21168297,SRS18429831,SRP451673,PRJNA999043,The transcription analysis of gonad in zebrafish,PRJNA999043,Other,To screen out the female biased genes,,,,,dmrt / 1,,isolate:not applicable|age:80days|dev stage:Adult|collection date:2021|geo loc name:China:Wuhan|sex:female|tissue:Gonad|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of gonad,dmrt1,dmrt1,screen out the key genes,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP451673,,,dmrt1_R2.fastq.gz dmrt1_R1.fastq.gz,fastq fastq,7183531200.0,23945104.0,dmrt1 R1.fastq.gz,0:150 1:150,A:1847909835;C:1724710101;G:1769658622;T:1841199904;N:52738,150,150,,,1847909835,1724710101,1769658622,1841199904,52738,SRX21168297,SRS18429831,SRA1681175,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.92259,0.92339,0.01692,0.01663,0.76558,0.76589,0.46917,0.46678,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-07-27,Multi-stage,Multi-stage,Gonad,Reproductive System
77263,SRR25434205,SRX21168296,SRS18429830,SRP451673,PRJNA999043,The transcription analysis of gonad in zebrafish,PRJNA999043,Other,To screen out the female biased genes,,,,,cyp17a1 / ;dmrt1 / 2,,isolate:not applicable|age:80days|dev stage:Adult|collection date:2021|geo loc name:China:Wuhan|sex:female|tissue:Gonad|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of gonad,dko2,dko2,screen out the key genes,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP451673,,,dko2_R2.fastq.gz dko2_R1.fastq.gz,fastq fastq,6765257700.0,22550859.0,dko2 R1.fastq.gz,0:150 1:150,A:1746873541;C:1617601783;G:1668365344;T:1732367309;N:49723,150,150,,,1746873541,1617601783,1668365344,1732367309,49723,SRX21168296,SRS18429830,SRA1681175,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.90858,0.90858,0.02015,0.01977,0.7612,0.76213,0.46791,0.47242,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-07-27,Multi-stage,Multi-stage,Gonad,Reproductive System
77264,SRR25434206,SRX21168295,SRS18429829,SRP451673,PRJNA999043,The transcription analysis of gonad in zebrafish,PRJNA999043,Other,To screen out the female biased genes,,,,,cyp17a1 / ;dmrt1 / 1,,isolate:not applicable|age:80days|dev stage:Adult|collection date:2021|geo loc name:China:Wuhan|sex:female|tissue:Gonad|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of gonad,dko1,dko1,screen out the key genes,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP451673,,,dko1_R1.fastq.gz dko1_R2.fastq.gz,fastq fastq,6638354100.0,22127847.0,dko1 R1.fastq.gz,0:150 1:150,A:1713258874;C:1593272953;G:1635070441;T:1696702837;N:48995,150,150,,,1713258874,1593272953,1635070441,1696702837,48995,SRX21168295,SRS18429829,SRA1681175,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.9182,0.91984,0.022,0.02186,0.76118,0.76167,0.47656,0.48847,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-07-27,Multi-stage,Multi-stage,Gonad,Reproductive System
77265,SRR25434207,SRX21168294,SRS18429828,SRP451673,PRJNA999043,The transcription analysis of gonad in zebrafish,PRJNA999043,Other,To screen out the female biased genes,,,,,Control2,,isolate:not applicable|age:80days|dev stage:Adult|collection date:2021|geo loc name:China:Wuhan|sex:female|tissue:Gonad|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of gonad,conf2,conf2,screen out the key genes,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP451673,,,conf2_R1.fastq.gz conf2_R2.fastq.gz,fastq fastq,6223727700.0,20745759.0,conf2 R1.fastq.gz,0:150 1:150,A:1590221936;C:1500196214;G:1554765877;T:1578496570;N:47103,150,150,,,1590221936,1500196214,1554765877,1578496570,47103,SRX21168294,SRS18429828,SRA1681175,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.92354,0.92626,0.01495,0.01561,0.76398,0.76418,0.47103,0.46492,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-07-27,Multi-stage,Multi-stage,Gonad,Reproductive System
77266,SRR25434208,SRX21168293,SRS18429827,SRP451673,PRJNA999043,The transcription analysis of gonad in zebrafish,PRJNA999043,Other,To screen out the female biased genes,,,,,Control1,,isolate:not applicable|age:80days|dev stage:Adult|collection date:2021|geo loc name:China:Wuhan|sex:female|tissue:Gonad|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of gonad,conf1,conf1,screen out the key genes,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP451673,,,conf1_R1.fastq.gz conf1_R2.fastq.gz,fastq fastq,6799767600.0,22665892.0,conf1 R1.fastq.gz,0:150 1:150,A:1740276620;C:1642790185;G:1671812697;T:1744859854;N:28244,150,150,,,1740276620,1642790185,1671812697,1744859854,28244,SRX21168293,SRS18429827,SRA1681175,Chinese Academy of Sciences|Institute of Hydrology,Chinese Academy of Sciences,2,0.93305,0.93328,0.01522,0.01517,0.76477,0.76627,0.47519,0.47422,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-07-27,Multi-stage,Multi-stage,Gonad,Reproductive System