rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
40984,SRR3521412,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,S1_replicate1.fq.gz,fastq,3198275111.0,46580204.0,S1 replicate 1,0:4 1:64.66,A:903404566;C:767156853;G:800702475;T:727011217;N:0,4,64,,,903404566,767156853,800702475,727011217,0,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.72262,,0.05785,,0.76552,,0.50263,,61,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40985,SRR3521413,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,S1_replicate2.fq.gz,fastq,3458893385.0,48723018.0,S1 replicate 2,0:4 1:66.99,A:1012209805;C:783264940;G:815198929;T:848219711;N:0,4,66,,,1012209805,783264940,815198929,848219711,0,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.80213,,0.06798,,0.76836,,0.50977,,64,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2017-05-16,Pharyngula,Embryo,Whole Organism,All anatomical structures
40986,SRR3521414,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,S1_replicate3.fq.gz,fastq,2246373759.0,27629374.0,S1 replicate 3,0:4 1:77.30,A:680882972;C:506454752;G:543187806;T:515848229;N:0,4,77,,,680882972,506454752,543187806,515848229,0,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.75362,,0.08102,,0.80874,,0.50576,,43,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40987,SRR3521415,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,,,3113059012.0,39573890.0,S1 replicate 4,0:4 1:74.66,A:917116196;C:724979517;G:776099987;T:694863312;N:0,4,74,,,917116196,724979517,776099987,694863312,0,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.75652,,0.07876,,0.81385,,0.50701,,69,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40988,SRR3521416,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,S1_replicate5.fq.gz,fastq,3997589784.0,50540637.0,S1 replicate 5,0:4 1:75.10,A:1185172057;C:921610580;G:981479162;T:909327985;N:0,4,75,,,1185172057,921610580,981479162,909327985,0,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.77298,,0.08278,,0.80196,,0.50419,,122,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40989,SRR3521417,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,loader:fastq load.py,S1_nonCodingRNA1.fq.gz,fastq,2515453735.0,26514293.0,S1 non coding RNA 1,0:94.87,A:545495988;C:609885515;G:774432484;T:585639748;N:0,94,,,,545495988,609885515,774432484,585639748,0,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.00845,,0.0053,,0.9976,,0.34551,,112,,T,,under 1.2% mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2017-10-02,Pharyngula,Embryo,Whole Organism,All anatomical structures
40990,SRR3521418,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,loader:fastq load.py,,,923856697.0,17302758.0,S1 non coding RNA 2,0:53.39,A:249661089;C:215235054;G:243253253;T:215639847;N:67454,53,,,,249661089,215235054,243253253,215639847,67454,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.10161,,0.02132,,0.98435,,0.29096,,51,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2017-10-02,Pharyngula,Embryo,Whole Organism,All anatomical structures
40991,SRR3521419,SRX1763130,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio: S1 data,S1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,,,797557294.0,14312934.0,S1 non coding RNA 3,0:4 1:51.72,A:215288442;C:189620793;G:209773713;T:182874346;N:0,4,51,,,215288442,189620793,209773713,182874346,0,SRX1763130,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.09688,,0.01835,,0.98027,,0.29048,,75,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40992,SRR3521405,SRX1763129,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio,V1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,V1_replicate1.fq.gz,fastq,4530127185.0,55155258.0,V1 replicate 1,0:4 1:78.13,A:1262427584;C:1070775955;G:1144547430;T:1052376216;N:0,4,78,,,1262427584,1070775955,1144547430,1052376216,0,SRX1763129,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.74907,,0.09071,,0.7876,,0.57031,,5,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40993,SRR3521406,SRX1763129,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio,V1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,V1_replicate2.fq.gz,fastq,1189043570.0,25178053.0,V1 replicate 2,0:4 1:43.23,A:319718349;C:286808587;G:313734800;T:268781834;N:0,4,43,,,319718349,286808587,313734800,268781834,0,SRX1763129,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.45251,,0.06891,,0.80385,,0.50742,,143,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40994,SRR3521407,SRX1763129,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio,V1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,V1_replicate3.fq.gz,fastq,3554365020.0,38155820.0,V1 replicate 3,0:4 1:89.15,A:1029602890;C:801334700;G:876594681;T:846832749;N:0,4,89,,,1029602890,801334700,876594681,846832749,0,SRX1763129,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.68437,,0.09576,,0.81688,,0.53109,,94,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2017-05-16,Pharyngula,Embryo,Whole Organism,All anatomical structures
40995,SRR3521408,SRX1763129,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio,V1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,,,4005348870.0,44573054.0,V1 replicate 4,0:4 1:85.86,A:1152986833;C:913529601;G:1003588263;T:935244173;N:0,4,85,,,1152986833,913529601,1003588263,935244173,0,SRX1763129,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.65253,,0.09144,,0.82726,,0.52272,,87,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2016-05-17,Pharyngula,Embryo,Whole Organism,All anatomical structures
40996,SRR3521409,SRX1763129,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio,V1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,,V1_replicate5.fq.gz,fastq,3724196991.0,41897201.0,V1 replicate 5,0:4 1:84.89,A:1058600798;C:857924228;G:938831956;T:868840009;N:0,4,84,,,1058600798,857924228,938831956,868840009,0,SRX1763129,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.6539,,0.08809,,0.82264,,0.525,,60,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2017-05-16,Pharyngula,Embryo,Whole Organism,All anatomical structures
40997,SRR3521410,SRX1763129,SRS1437887,SRP075186,PRJNA321644,Danio rerio RNA structure,PRJNA321644,Whole Genome Sequencing,RNA structure of Danio rerio to understand role of secondary structure dynamics,,,,Danio rerio transcriptome secondary structure,ASWT RNA structure,,strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal,,,,,,,,,Structure dynamics of zebrafish transcriptome using PAR CLIP,RNA structure of Danio rerio,V1,1,,,OTHER,TRANSCRIPTOMIC,PolyA,SINGLE,ION_TORRENT,Ion Torrent Proton,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP075186,,loader:fastq load.py,V1_nonCodingRNA.fq.gz,fastq,1824118507.0,29210555.0,V1 non coding RNA,0:62.45,A:473289902;C:444879325;G:490109158;T:415840122;N:0,62,,,,473289902,444879325,490109158,415840122,0,SRX1763129,SRS1437887,SRA425688,CSIR-IGIB,CSIR- Institute of Genomics and Integrative Biology,1,0.08263,,0.01578,,0.98021,,0.34484,,62,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,poly_a,unknown,bulk,unknown,unknown,,India,2017-10-02,Pharyngula,Embryo,Whole Organism,All anatomical structures