rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
31980,SRR28892728,SRX24451189,SRS21204958,SRP505641,PRJNA1107713,Tea polyphenols induce hepatotoxicity by interfering with adult zebrafish lipid metabolism and gut microbiota through the gut liver axis,PRJNA1107713,Other,High dose tea polyphenols may promote fatty acid absorption by hepatocytes by up regulating FABP  CD36 and SRB1 genes  inhibiting fatty acid efflux by down regulating ABCA1 genes  and inhibiting fatty acid beta oxidation by down regulating CPT1 and ACAA2 genes  resulting in fat accumulation in hepatocytes  upregulation of inflammatory pathways  and increased expression of pro inflammatory factors TNF a and IL1 b.,,,,,TP3,,strain:not applicable|isolate:not applicable|breed:not collected|cultivar:not applicable|ecotype:AB ecotype|age:5 month|collection date:2022 11 24|geo loc name:China|sex:male|tissue:liver|replicate:replicate=biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,Adult zebrafish liver,TP3,TP3,mRNAseq of zebrafish liver  replication 3 of TP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP505641,,,TP3_1.fq.gz TP3_2.fq.gz,fastq fastq,6657069900.0,22190233.0,TP3 1.fq.gz,0:150 1:150,A:1808410149;C:1512668682;G:1536153888;T:1799837181;N:0,150,150,,,1808410149,1512668682,1536153888,1799837181,0,SRX24451189,SRS21204958,SRA1858747,Beibu Gulf University|college of Food Engineering,Beibu Gulf University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-05-04,Adult,Adult,Liver,Liver and Biliary System
31981,SRR28892729,SRX24451188,SRS21204959,SRP505641,PRJNA1107713,Tea polyphenols induce hepatotoxicity by interfering with adult zebrafish lipid metabolism and gut microbiota through the gut liver axis,PRJNA1107713,Other,High dose tea polyphenols may promote fatty acid absorption by hepatocytes by up regulating FABP  CD36 and SRB1 genes  inhibiting fatty acid efflux by down regulating ABCA1 genes  and inhibiting fatty acid beta oxidation by down regulating CPT1 and ACAA2 genes  resulting in fat accumulation in hepatocytes  upregulation of inflammatory pathways  and increased expression of pro inflammatory factors TNF a and IL1 b.,,,,,TP2,,strain:not applicable|isolate:not applicable|breed:not collected|cultivar:not applicable|ecotype:AB ecotype|age:5 month|collection date:2022 11 24|geo loc name:China|sex:male|tissue:liver|replicate:replicate=biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,Adult zebrafish liver,TP2,TP2,mRNAseq of zebrafish liver  replication 2 of TP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP505641,,,TP2_1.fq.gz TP2_2.fq.gz,fastq fastq,6617368500.0,22057895.0,TP2 1.fq.gz,0:150 1:150,A:1799646726;C:1503407966;G:1523443584;T:1790870224;N:0,150,150,,,1799646726,1503407966,1523443584,1790870224,0,SRX24451188,SRS21204959,SRA1858747,Beibu Gulf University|college of Food Engineering,Beibu Gulf University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-05-04,Adult,Adult,Liver,Liver and Biliary System
31982,SRR28892730,SRX24451187,SRS21204956,SRP505641,PRJNA1107713,Tea polyphenols induce hepatotoxicity by interfering with adult zebrafish lipid metabolism and gut microbiota through the gut liver axis,PRJNA1107713,Other,High dose tea polyphenols may promote fatty acid absorption by hepatocytes by up regulating FABP  CD36 and SRB1 genes  inhibiting fatty acid efflux by down regulating ABCA1 genes  and inhibiting fatty acid beta oxidation by down regulating CPT1 and ACAA2 genes  resulting in fat accumulation in hepatocytes  upregulation of inflammatory pathways  and increased expression of pro inflammatory factors TNF a and IL1 b.,,,,,TP1,,strain:not applicable|isolate:not applicable|breed:not collected|cultivar:not applicable|ecotype:AB ecotype|age:5 month|collection date:2022 11 24|geo loc name:China|sex:male|tissue:liver|replicate:replicate=biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,Adult zebrafish liver,TP1,TP1,mRNAseq of zebrafish liver  replication 1 of TP,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP505641,,,TP1_1.fq.gz TP1_2.fq.gz,fastq fastq,6432586800.0,21441956.0,TP1 1.fq.gz,0:150 1:150,A:1743341515;C:1465440262;G:1488109144;T:1735695879;N:0,150,150,,,1743341515,1465440262,1488109144,1735695879,0,SRX24451187,SRS21204956,SRA1858747,Beibu Gulf University|college of Food Engineering,Beibu Gulf University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-05-04,Adult,Adult,Liver,Liver and Biliary System
31983,SRR28892731,SRX24451186,SRS21204957,SRP505641,PRJNA1107713,Tea polyphenols induce hepatotoxicity by interfering with adult zebrafish lipid metabolism and gut microbiota through the gut liver axis,PRJNA1107713,Other,High dose tea polyphenols may promote fatty acid absorption by hepatocytes by up regulating FABP  CD36 and SRB1 genes  inhibiting fatty acid efflux by down regulating ABCA1 genes  and inhibiting fatty acid beta oxidation by down regulating CPT1 and ACAA2 genes  resulting in fat accumulation in hepatocytes  upregulation of inflammatory pathways  and increased expression of pro inflammatory factors TNF a and IL1 b.,,,,,CONT3,,strain:not applicable|isolate:not applicable|breed:not collected|cultivar:not applicable|ecotype:AB ecotype|age:5 month|collection date:2022 11 24|geo loc name:China|sex:male|tissue:liver|replicate:replicate=biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,Adult zebrafish liver,CON3,CON3,mRNAseq of zebrafish liver  replication 3 of CONT,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP505641,,,CONT3_1.fq.gz CONT3_2.fq.gz,fastq fastq,6595768200.0,21985894.0,CONT3 1.fq.gz,0:150 1:150,A:1762107185;C:1525175684;G:1547321856;T:1761163475;N:0,150,150,,,1762107185,1525175684,1547321856,1761163475,0,SRX24451186,SRS21204957,SRA1858747,Beibu Gulf University|college of Food Engineering,Beibu Gulf University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-05-04,Adult,Adult,Liver,Liver and Biliary System
31984,SRR28892732,SRX24451185,SRS21204954,SRP505641,PRJNA1107713,Tea polyphenols induce hepatotoxicity by interfering with adult zebrafish lipid metabolism and gut microbiota through the gut liver axis,PRJNA1107713,Other,High dose tea polyphenols may promote fatty acid absorption by hepatocytes by up regulating FABP  CD36 and SRB1 genes  inhibiting fatty acid efflux by down regulating ABCA1 genes  and inhibiting fatty acid beta oxidation by down regulating CPT1 and ACAA2 genes  resulting in fat accumulation in hepatocytes  upregulation of inflammatory pathways  and increased expression of pro inflammatory factors TNF a and IL1 b.,,,,,CONT2,,strain:not applicable|isolate:not applicable|breed:not collected|cultivar:not applicable|ecotype:AB ecotype|age:5 month|collection date:2022 11 24|geo loc name:China|sex:male|tissue:liver|replicate:replicate=biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,Adult zebrafish liver,CON2,CON2,mRNAseq of zebrafish liver  replication 2 of CONT,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP505641,,,CONT2_1.fq.gz CONT2_2.fq.gz,fastq fastq,6175346400.0,20584488.0,CONT2 1.fq.gz,0:150 1:150,A:1656546719;C:1421990443;G:1442409824;T:1654399414;N:0,150,150,,,1656546719,1421990443,1442409824,1654399414,0,SRX24451185,SRS21204954,SRA1858747,Beibu Gulf University|college of Food Engineering,Beibu Gulf University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-05-04,Adult,Adult,Liver,Liver and Biliary System
31985,SRR28892733,SRX24451184,SRS21204955,SRP505641,PRJNA1107713,Tea polyphenols induce hepatotoxicity by interfering with adult zebrafish lipid metabolism and gut microbiota through the gut liver axis,PRJNA1107713,Other,High dose tea polyphenols may promote fatty acid absorption by hepatocytes by up regulating FABP  CD36 and SRB1 genes  inhibiting fatty acid efflux by down regulating ABCA1 genes  and inhibiting fatty acid beta oxidation by down regulating CPT1 and ACAA2 genes  resulting in fat accumulation in hepatocytes  upregulation of inflammatory pathways  and increased expression of pro inflammatory factors TNF a and IL1 b.,,,,,CONT1,,strain:not applicable|isolate:not applicable|breed:not collected|cultivar:not applicable|ecotype:AB ecotype|age:5 month|collection date:2022 11 24|geo loc name:China|sex:male|tissue:liver|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,Adult zebrafish liver,CON1,CON1,mRNAseq of zebrafish liver  replication 1 of CONT,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP505641,,,CONT1_1.fq.gz CONT1_2.fq.gz,fastq fastq,6342828300.0,21142761.0,CONT1 1.fq.gz,0:150 1:150,A:1698306803;C:1464261565;G:1482929449;T:1697330483;N:0,150,150,,,1698306803,1464261565,1482929449,1697330483,0,SRX24451184,SRS21204955,SRA1858747,Beibu Gulf University|college of Food Engineering,Beibu Gulf University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-05-04,Adult,Adult,Liver,Liver and Biliary System
36214,SRR33581822,SRX28811683,SRS25048556,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,Rg1 L3,,strain:Not collected|isolate:Rg1 L3|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:9|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Treatment,Rg1 L3,Rg1 L3,Treatment,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,D4_1.fq.gz D4_2.fq.gz,fastq fastq,6696495000.0,22321650.0,D4 1.fq.gz,0:150 1:150,A:1846856660;C:1513002602;G:1504866522;T:1831769216;N:0,150,150,,,1846856660,1513002602,1504866522,1831769216,0,SRX28811683,SRS25048556,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36215,SRR33581823,SRX28811682,SRS25048555,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,Rg1 L7,,strain:Not collected|isolate:Rg1 L7|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:8|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Treatment,Rg1 L7,Rg1 L7,Treatment,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,D2_1.fq.gz D2_2.fq.gz,fastq fastq,6666041700.0,22220139.0,D2 1.fq.gz,0:150 1:150,A:1845276816;C:1500512488;G:1492917547;T:1827334849;N:0,150,150,,,1845276816,1500512488,1492917547,1827334849,0,SRX28811682,SRS25048555,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36216,SRR33581824,SRX28811681,SRS25048554,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,Rg1 L5,,strain:Not collected|isolate:Rg1 L5|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:7|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Treatment,Rg1 L5,Rg1 L5,Treatment,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,D1_1.fq.gz D1_2.fq.gz,fastq fastq,6698296200.0,22327654.0,D1 1.fq.gz,0:150 1:150,A:1843962508;C:1518208646;G:1509450148;T:1826674898;N:0,150,150,,,1843962508,1518208646,1509450148,1826674898,0,SRX28811681,SRS25048554,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36217,SRR33581825,SRX28811680,SRS25048553,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,PN L7,,strain:Not collected|isolate:PN L7|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Model,PN L7,PN L7,Model,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,B3_1.fq.gz B3_2.fq.gz,fastq fastq,6611023200.0,22036744.0,B3 1.fq.gz,0:150 1:150,A:1823488173;C:1492231000;G:1485521400;T:1809782627;N:0,150,150,,,1823488173,1492231000,1485521400,1809782627,0,SRX28811680,SRS25048553,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36218,SRR33581826,SRX28811679,SRS25048552,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,PN L2,,strain:Not collected|isolate:PN L2|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Model,PN L2,PN L2,Model,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,B2_1.fq.gz B2_2.fq.gz,fastq fastq,6673419600.0,22244732.0,B2 1.fq.gz,0:150 1:150,A:1853555661;C:1496204062;G:1487686506;T:1835973371;N:0,150,150,,,1853555661,1496204062,1487686506,1835973371,0,SRX28811679,SRS25048552,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36219,SRR33581827,SRX28811678,SRS25048551,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,PN L4,,strain:Not collected|isolate:PN L4|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Model,PN L4,PN L4,Model,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,B1_1.fq.gz B1_2.fq.gz,fastq fastq,6654915300.0,22183051.0,B1 1.fq.gz,0:150 1:150,A:1864666474;C:1477163584;G:1469026869;T:1844058373;N:0,150,150,,,1864666474,1477163584,1469026869,1844058373,0,SRX28811678,SRS25048551,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36220,SRR33581828,SRX28811677,SRS25048550,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,Con L1,,strain:Not collected|isolate:Con L1|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Control,Con L1,Con L1,Control,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,A3_1.fq.gz A3_2.fq.gz,fastq fastq,6805948200.0,22686494.0,A3 1.fq.gz,0:150 1:150,A:1865806598;C:1548653255;G:1540767459;T:1850720888;N:0,150,150,,,1865806598,1548653255,1540767459,1850720888,0,SRX28811677,SRS25048550,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36221,SRR33581829,SRX28811676,SRS25048549,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,Con Lb,,strain:Not collected|isolate:Con Lb|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Control,Con Lb,Con Lb,Control,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,A2_1.fq.gz A2_2.fq.gz,fastq fastq,6807123600.0,22690412.0,A2 1.fq.gz,0:150 1:150,A:1868554012;C:1546467202;G:1539322143;T:1852780243;N:0,150,150,,,1868554012,1546467202,1539322143,1852780243,0,SRX28811676,SRS25048549,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36222,SRR33581830,SRX28811675,SRS25048548,SRP585544,PRJNA1263423,Ginsenoside Rg1 modulates key pathways in zebrafish with glucocorticoid induced osteoporosis,PRJNA1263423,Other,,,,,,Con La,,strain:Not collected|isolate:Con La|cultivar:Not collected|ecotype:Not collected|age:8 dpf stage:Larvae|collection date:2024 06 03|geo loc name:Not collected|sex:Not collected|tissue:Larvae|tmp:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Zebrafish: Control,Con La,Con La,,,,WGS,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-G400,,SRP585544,,,A1_1.fq.gz A1_2.fq.gz,fastq fastq,6782914200.0,22609714.0,A1 1.fq.gz,0:150 1:150,A:1857557307;C:1544915899;G:1537431564;T:1843009430;N:0,150,150,,,1857557307,1544915899,1537431564,1843009430,0,SRX28811675,SRS25048548,SRA2130283,Hubei University of Medicine|Graduate school,Hubei University of Medicine,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-15,Larval,Larval,Undetermined,Undetermined
36227,SRR33613672,SRX28842027,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 3,HFD 3,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-3-1.fq.gz HFD-3-2.fq.gz,fastq fastq,6810755100.0,22702517.0,HFD 3 1.fq.gz,0:150 1:150,A:1804127778;C:1596175018;G:1609090701;T:1801361603;N:0,150,150,,,1804127778,1596175018,1609090701,1801361603,0,SRX28842027,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36228,SRR33613673,SRX28842026,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 2,HFD 2,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-2-1.fq.gz HFD-2-2.fq.gz,fastq fastq,6826358400.0,22754528.0,HFD 2 1.fq.gz,0:150 1:150,A:1826465185;C:1582322712;G:1596188986;T:1821381517;N:0,150,150,,,1826465185,1582322712,1596188986,1821381517,0,SRX28842026,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36229,SRR33613674,SRX28842025,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD 1,HFD 1,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD-1-1.fq.gz HFD-1-2.fq.gz,fastq fastq,6598410300.0,21994701.0,HFD 1 1.fq.gz,0:150 1:150,A:1765905584;C:1529581410;G:1542056821;T:1760866485;N:0,150,150,,,1765905584,1529581410,1542056821,1760866485,0,SRX28842025,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36230,SRR33613675,SRX28842024,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 3,HFD10 3,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-3-1.fq.gz HFD10-3-2.fq.gz,fastq fastq,6609153300.0,22030511.0,HFD10 3 1.fq.gz,0:150 1:150,A:1780787716;C:1521027085;G:1532800826;T:1774537673;N:0,150,150,,,1780787716,1521027085,1532800826,1774537673,0,SRX28842024,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36231,SRR33613676,SRX28842023,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 2,HFD10 2,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-2-1.fq.gz HFD10-2-2.fq.gz,fastq fastq,6605145900.0,22017153.0,HFD10 2 1.fq.gz,0:150 1:150,A:1765731508;C:1533254667;G:1545960098;T:1760199627;N:0,150,150,,,1765731508,1533254667,1545960098,1760199627,0,SRX28842023,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36232,SRR33613677,SRX28842022,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,HFD10 1,HFD10 1,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,HFD10-1-1.fq.gz HFD10-1-2.fq.gz,fastq fastq,6780056700.0,22600189.0,HFD10 1 1.fq.gz,0:150 1:150,A:1819443100;C:1566081115;G:1580525465;T:1814007020;N:0,150,150,,,1819443100,1566081115,1580525465,1814007020,0,SRX28842022,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36233,SRR33613678,SRX28842021,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 3,NFD 3,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-3-1.fq.gz NFD-3-2.fq.gz,fastq fastq,6677775900.0,22259253.0,NFD 3 1.fq.gz,0:150 1:150,A:1794821611;C:1541478212;G:1552820105;T:1788655972;N:0,150,150,,,1794821611,1541478212,1552820105,1788655972,0,SRX28842021,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36234,SRR33613679,SRX28842020,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 2,NFD 2,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-2-1.fq.gz NFD-2-2.fq.gz,fastq fastq,6680197200.0,22267324.0,NFD 2 1.fq.gz,0:150 1:150,A:1810744167;C:1526383805;G:1539949310;T:1803119918;N:0,150,150,,,1810744167,1526383805,1539949310,1803119918,0,SRX28842020,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure
36235,SRR33613680,SRX28842019,SRS25072222,SRP586119,PRJNA1263917,Danio rerio Transcriptome or Gene expression,PRJNA1263917,Other,Analyze the effect of TB KW fermentation on gene expression in high lipid zebrafish.,,,,Danio rerio,Danio rerio,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 day|dev stage:Juvenile fish|collection date:2024 04 16|geo loc name:China: Hang Zhou|sex:missing|tissue:Whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,NFD 1,NFD 1,Total RNA was extracted  digested with DNase I  and mRNA enriched. post fragmentation  cDNA synthesis  and library construction  the final single stranded DNA nanoball library was generated for sequencing via rolling circle replication.,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,DNBSEQ,DNBSEQ-T7,,SRP586119,,,NFD-1-1.fq.gz NFD-1-2.fq.gz,fastq fastq,6587923800.0,21959746.0,NFD 1 1.fq.gz,0:150 1:150,A:1773646514;C:1516320091;G:1530275621;T:1767681574;N:0,150,150,,,1773646514,1516320091,1530275621,1767681574,0,SRX28842019,SRS25072222,SRA2131918,Yibin University|Faculty of Quality Management and Inspection & Qua,Yibin University,,,,,,,,,,,,B,B,biological fallback assumption,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2025-05-18,Multi-stage,Multi-stage,Trunk,Surface Structure