rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 0,DRR314108,DRX303511,DRS233566,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of wild type sibling sample3,SAMD00399013,,sample name:rna rw337 48hpf WT rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399013,DRX303511,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399013,,,,23076492885.0,76679376.0,DRR314108,0:150.51 1:150.44,A:6146969533;C:5373690527;G:5458576301;T:6095818756;N:1437768,150,150,,,6146969533,5373690527,5458576301,6095818756,1437768,DRX303511,DRS233566,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.94223,0.94614,0.10721,0.10288,0.68745,0.68621,0.4728,0.47157,151,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise 1,DRR314107,DRX303510,DRS233565,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of wild type sibling sample2,SAMD00399012,,sample name:rna rw337 48hpf WT rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399012,DRX303510,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399012,,,,26091623771.0,86694066.0,DRR314107,0:150.51 1:150.45,A:6955374552;C:6050013285;G:6169385096;T:6915281392;N:1569446,150,150,,,6955374552,6050013285,6169385096,6915281392,1569446,DRX303510,DRS233565,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.94028,0.94277,0.11038,0.10462,0.68288,0.68134,0.46992,0.47227,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise 2,DRR314106,DRX303509,DRS233564,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of wild type sibling sample1,SAMD00399011,,sample name:rna rw337 48hpf WT rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399011,DRX303509,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399011,,,,23833525756.0,79191795.0,DRR314106,0:150.51 1:150.44,A:6324521565;C:5556755459;G:5694025045;T:6256748423;N:1475264,150,150,,,6324521565,5556755459,5694025045,6256748423,1475264,DRX303509,DRS233564,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.94723,0.94975,0.09521,0.09114,0.6776,0.67819,0.46045,0.46153,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise 3,DRR314105,DRX303508,DRS233563,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of banp mutant sample3,SAMD00399010,,sample name:rna rw337 48hpf Mutant rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399010,DRX303508,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399010,,,,27688386114.0,92009317.0,DRR314105,0:150.49 1:150.44,A:7681451080;C:6071566134;G:6242782106;T:7690830655;N:1756139,150,150,,,7681451080,6071566134,6242782106,7690830655,1756139,DRX303508,DRS233563,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.91038,0.91556,0.17971,0.16967,0.67718,0.67716,0.47042,0.46425,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise 4,DRR314104,DRX303507,DRS233562,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of banp mutant sample2,SAMD00399009,,sample name:rna rw337 48hpf Mutant rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399009,DRX303507,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399009,,,,22970994572.0,76322352.0,DRR314104,0:150.52 1:150.46,A:6142535654;C:5310453740;G:5430124468;T:6086516676;N:1364034,150,150,,,6142535654,5310453740,5430124468,6086516676,1364034,DRX303507,DRS233562,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.93707,0.94063,0.12175,0.11613,0.67825,0.67649,0.46485,0.46905,147,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise 5,DRR314103,DRX303506,DRS233561,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of banp mutant sample1,SAMD00399008,,sample name:rna rw337 48hpf Mutant rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399008,DRX303506,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399008,,,,23637901630.0,78541449.0,DRR314103,0:150.51 1:150.45,A:6359178134;C:5420730443;G:5530700546;T:6325864263;N:1428244,150,150,,,6359178134,5420730443,5530700546,6325864263,1428244,DRX303506,DRS233561,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.9308,0.93545,0.13172,0.12462,0.68219,0.6814,0.46842,0.46984,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise 6,DRR315802,DRX305194,DRS231989,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample4,SAMD00400823,,sample name:rw147 2.5dpf wildtype rep 4|biological replicate:4,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400823,DRX305194,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400823,,,,10262353995.0,34151547.0,DRR315802,0:150.27 1:150.22,A:2735078560;C:2386126821;G:2433638250;T:2707202814;N:307550,150,150,,,2735078560,2386126821,2433638250,2707202814,307550,DRX305194,DRS231989,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95231,0.95295,0.09229,0.08773,0.71819,0.72107,0.46746,0.46617,151,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 7,DRR315801,DRX305193,DRS231988,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample3,SAMD00400822,,sample name:rw147 2.5dpf wildtype rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400822,DRX305193,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400822,,,,11516368634.0,38355888.0,DRR315801,0:150.15 1:150.10,A:3080341643;C:2678048339;G:2713051368;T:3044449330;N:477954,150,150,,,3080341643,2678048339,2713051368,3044449330,477954,DRX305193,DRS231988,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95353,0.95634,0.08909,0.08533,0.71374,0.71252,0.45986,0.46059,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 8,DRR315800,DRX305192,DRS231987,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample2,SAMD00400821,,sample name:rw147 2.5dpf wildtype rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400821,DRX305192,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400821,,,,8814057148.0,29367513.0,DRR315800,0:150.09 1:150.04,A:2350403211;C:2054073465;G:2083044327;T:2326181188;N:354957,150,150,,,2350403211,2054073465,2083044327,2326181188,354957,DRX305192,DRS231987,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95287,0.95643,0.0891,0.08586,0.70309,0.70252,0.46384,0.46281,151,149,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 9,DRR315799,DRX305191,DRS231986,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample1,SAMD00400820,,sample name:rw147 2.5dpf wildtype rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400820,DRX305191,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400820,,,,10491955578.0,34900682.0,DRR315799,0:150.34 1:150.28,A:2796521111;C:2446218287;G:2483414564;T:2765477785;N:323831,150,150,,,2796521111,2446218287,2483414564,2765477785,323831,DRX305191,DRS231986,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.9539,0.95646,0.08185,0.07808,0.70025,0.70013,0.44713,0.44987,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 10,DRR315798,DRX305190,DRS231985,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample4,SAMD00400819,,sample name:rw147 2.5dpf Mutant rep 4|biological replicate:4,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400819,DRX305190,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400819,,,,9197802250.0,30604326.0,DRR315798,0:150.30 1:150.24,A:2468967963;C:2130949980;G:2158692262;T:2438931017;N:261028,150,150,,,2468967963,2130949980,2158692262,2438931017,261028,DRX305190,DRS231985,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95159,0.95439,0.10146,0.09758,0.71995,0.71983,0.46519,0.46797,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 11,DRR315797,DRX305189,DRS231984,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample3,SAMD00400818,,sample name:rw147 2.5dpf Mutant rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400818,DRX305189,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400818,,,,10498982078.0,34931731.0,DRR315797,0:150.31 1:150.25,A:2804535103;C:2445295179;G:2478768789;T:2770066062;N:316945,150,150,,,2804535103,2445295179,2478768789,2770066062,316945,DRX305189,DRS231984,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95448,0.95652,0.0939,0.0887,0.71796,0.71847,0.46335,0.46615,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 12,DRR315796,DRX305188,DRS231983,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample2,SAMD00400817,,sample name:rw147 2.5dpf Mutant rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400817,DRX305188,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400817,,,,9850145990.0,32782079.0,DRR315796,0:150.26 1:150.21,A:2636205537;C:2286508705;G:2319481100;T:2607600624;N:350024,150,150,,,2636205537,2286508705,2319481100,2607600624,350024,DRX305188,DRS231983,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95193,0.95472,0.09722,0.09375,0.7138,0.71299,0.45542,0.45994,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 13,DRR315795,DRX305187,DRS231982,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample1,SAMD00400816,,sample name:rw147 2.5dpf Mutant rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400816,DRX305187,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,1510Application ReadForward11Application ReadReverse76,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400816,,,,9542039835.0,31780260.0,DRR315795,0:150.15 1:150.10,A:2543384204;C:2224374632;G:2258183435;T:2515655339;N:442225,150,150,,,2543384204,2224374632,2258183435,2515655339,442225,DRX305187,DRS231982,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.9528,0.95591,0.08656,0.0828,0.70352,0.70331,0.45316,0.44914,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise 36032,SRR33405556,SRX28646822,SRS24917431,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,mut2 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:mut|replicate:mut 2 dpf replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,mut2 d2,mut2 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_mut-2_S6_R1_001.fastq.gz y680_mut-2_S6_R2_001.fastq.gz,fastq fastq,13048391588.0,65176490.0,y680 mut 2 S6 R1 001.fastq.gz,0:100.12 1:100.08,A:3382606790;C:3166963239;G:3249911967;T:3247119183;N:1790409,100,100,,,3382606790,3166963239,3249911967,3247119183,1790409,SRX28646822,SRS24917431,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36033,SRR33405557,SRX28646821,SRS24917430,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,mut1 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:mut|replicate:mut 2 dpf replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,mut1 d2,mut1 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_mut-1_S5_R1_001.fastq.gz y680_mut-1_S5_R2_001.fastq.gz,fastq fastq,11244387522.0,56145229.0,y680 mut 1 S5 R1 001.fastq.gz,0:100.15 1:100.12,A:2893088657;C:2737659501;G:2830491662;T:2781546759;N:1600943,100,100,,,2893088657,2737659501,2830491662,2781546759,1600943,SRX28646821,SRS24917430,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36034,SRR33405558,SRX28646820,SRS24917429,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,het4 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:het|replicate:het 2 dpf replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,het4 d2,het4 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_het-4_S4_R1_001.fastq.gz y680_het-4_S4_R2_001.fastq.gz,fastq fastq,7488095202.0,37372687.0,y680 het 4 S4 R1 001.fastq.gz,0:100.20 1:100.16,A:1931359037;C:1813371312;G:1880760315;T:1861860377;N:744161,100,100,,,1931359037,1813371312,1880760315,1861860377,744161,SRX28646820,SRS24917429,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36035,SRR33405559,SRX28646819,SRS24917428,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,het3 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:het|replicate:het 2 dpf replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,het3 d2,het3 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_het-3_S3_R1_001.fastq.gz y680_het-3_S3_R2_001.fastq.gz,fastq fastq,13441009956.0,67072919.0,y680 het 3 S3 R1 001.fastq.gz,0:100.22 1:100.18,A:3484306615;C:3249847841;G:3351167195;T:3353988961;N:1699344,100,100,,,3484306615,3249847841,3351167195,3353988961,1699344,SRX28646819,SRS24917428,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36036,SRR33405560,SRX28646818,SRS24917427,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,het2 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:het|replicate:het 2 dpf replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,het2 d2,het2 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_het-2_S2_R1_001.fastq.gz y680_het-2_S2_R2_001.fastq.gz,fastq fastq,10048330828.0,50202819.0,y680 het 2 S2 R1 001.fastq.gz,0:100.10 1:100.05,A:2557623639;C:2473642678;G:2526118363;T:2490175343;N:770805,100,100,,,2557623639,2473642678,2526118363,2490175343,770805,SRX28646818,SRS24917427,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36037,SRR33405561,SRX28646817,SRS24917426,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,het1 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:het|replicate:het 2 dpf replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,het1 d2,het1 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_het-1_S1_R1_001.fastq.gz y680_het-1_S1_R2_001.fastq.gz,fastq fastq,21241485328.0,106063264.0,y680 het 1 S1 R1 001.fastq.gz,0:100.16 1:100.11,A:5428876256;C:5216202525;G:5316134708;T:5278092708;N:2179131,100,100,,,5428876256,5216202525,5316134708,5278092708,2179131,SRX28646817,SRS24917426,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36038,SRR33405562,SRX28646816,SRS24917425,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,wt4 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:WT|replicate:wt 2 dpf replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,wt4 d2,wt4 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680-WT-4_S56_R1_001.fastq.gz y680-WT-4_S56_R2_001.fastq.gz,fastq fastq,2871774704.0,14403351.0,y680 WT 4 S56 R1 001.fastq.gz,0:99.62 1:99.76,A:738963438;C:693060627;G:725455885;T:712804013;N:1490741,99,99,,,738963438,693060627,725455885,712804013,1490741,SRX28646816,SRS24917425,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36040,SRR33405564,SRX28646814,SRS24917423,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,wt3 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:WT|replicate:wt 2 dpf replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,wt3 d2,wt3 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_WT-3_S11_R1_001.fastq.gz y680_WT-3_S11_R2_001.fastq.gz,fastq fastq,4644100900.0,23208636.0,y680 WT 3 S11 R1 001.fastq.gz,0:100.02 1:100.08,A:1208863635;C:1115875593;G:1183409664;T:1134173818;N:1778190,100,100,,,1208863635,1115875593,1183409664,1134173818,1778190,SRX28646814,SRS24917423,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36049,SRR33405573,SRX28646805,SRS24917414,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,mut4 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:mut|replicate:mut 2 dpf replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,mut4 d2,mut4 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_mut-4_S8_R1_001.fastq.gz y680_mut-4_S8_R2_001.fastq.gz,fastq fastq,6364246187.0,31799210.0,y680 mut 4 S8 R1 001.fastq.gz,0:100.05 1:100.09,A:1644746630;C:1536469430;G:1617907325;T:1562993280;N:2129522,100,100,,,1644746630,1536469430,1617907325,1562993280,2129522,SRX28646805,SRS24917414,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36050,SRR33405574,SRX28646804,SRS24917413,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,mut3 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:mut|replicate:mut 2 dpf replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,mut3 d2,mut3 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_mut-3_S7_R1_001.fastq.gz y680_mut-3_S7_R2_001.fastq.gz,fastq fastq,12769594212.0,63754551.0,y680 mut 3 S7 R1 001.fastq.gz,0:100.17 1:100.12,A:3270488183;C:3128646350;G:3212521095;T:3156861188;N:1077396,100,100,,,3270488183,3128646350,3212521095,3156861188,1077396,SRX28646804,SRS24917413,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36051,SRR33405575,SRX28646803,SRS24917412,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,wt2 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:WT|replicate:wt 2 dpf replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,wt2 d2,wt2 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680-WT-2_S40_R1_001.fastq.gz y680-WT-2_S40_R2_001.fastq.gz,fastq fastq,7228768016.0,36426014.0,y680 WT 2 S40 R1 001.fastq.gz,0:99.18 1:99.27,A:1808349692;C:1804255213;G:1817770107;T:1795596464;N:2796540,99,99,,,1808349692,1804255213,1817770107,1795596464,2796540,SRX28646803,SRS24917412,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 36052,SRR33405576,SRX28646802,SRS24917411,SRP582714,PRJNA1257950,Zebrafish Timothy syndrome knock in model,PRJNA1257950,Other,Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome.,,,,,wt1 d2,,strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:WT|replicate:wt 2 dpf replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish TS2 mutant,wt1 d2,wt1 d2,TruSeq library,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP582714,,,y680_WT-1_S9_R1_001.fastq.gz y680_WT-1_S9_R2_001.fastq.gz,fastq fastq,6639999850.0,33169283.0,y680 WT 1 S9 R1 001.fastq.gz,0:100.08 1:100.10,A:1706100512;C:1614640504;G:1665440844;T:1651930739;N:1887251,100,100,,,1706100512,1614640504,1665440844,1651930739,1887251,SRX28646802,SRS24917411,SRA2122396,NICHD|DDB,NICHD,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,United States,2025-05-01,Hatching,Embryo,Undetermined,Embryo Imprecise 59036,SRR11578951,SRX8146805,SRS6509417,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,WT,54WT4,54WT4,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54WT4 R1 001.fastq.gz|filename2:54WT4 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54WT4,S7,S7,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54WT4_R2_001.fastq.gz 54WT4_R1_001.fastq.gz,fastq fastq,7136583059.0,47328719.0,54WT4 R1 001.fastq.gz,0:75.39 1:75.40,A:1980254600;C:1593971374;G:1644375041;T:1916731613;N:1250431,75,75,,,1980254600,1593971374,1644375041,1916731613,1250431,SRX8146805,SRS6509417,SRA1067518,UPF|Genomics,UPF,2,0.91504,0.91439,0.09602,0.09527,0.73245,0.73777,0.46955,0.48655,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise 59037,SRR11578952,SRX8146804,SRS6509416,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,WT,54WT3,54WT3,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54WT3 R1 001.fastq.gz|filename2:54WT3 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54WT3,S5,S5,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54WT3_R1_001.fastq.gz 54WT3_R2_001.fastq.gz,fastq fastq,5683476624.0,37713746.0,54WT3 R1 001.fastq.gz,0:75.35 1:75.35,A:1578885174;C:1271523804;G:1309222456;T:1522827535;N:1017655,75,75,,,1578885174,1271523804,1309222456,1522827535,1017655,SRX8146804,SRS6509416,SRA1067518,UPF|Genomics,UPF,2,0.91126,0.91193,0.10356,0.10472,0.73975,0.7461,0.47619,0.47737,75,75,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise 59038,SRR11578953,SRX8146803,SRS6509415,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,WT,54WT2,54WT2,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54WT2 R1 001.fastq.gz|filename2:54WT2 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54WT2,S3,S3,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54WT2_R1_001.fastq.gz 54WT2_R2_001.fastq.gz,fastq fastq,6860136869.0,45523385.0,54WT2 R1 001.fastq.gz,0:75.34 1:75.35,A:1906640944;C:1530528609;G:1580010044;T:1841799217;N:1158055,75,75,,,1906640944,1530528609,1580010044,1841799217,1158055,SRX8146803,SRS6509415,SRA1067518,UPF|Genomics,UPF,2,0.91215,0.91207,0.10861,0.11028,0.74381,0.74968,0.48908,0.49262,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise 59039,SRR11578954,SRX8146802,SRS6509414,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,WT,54WT1,54WT1,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54WT1 R1 001.fastq.gz|filename2:54WT1 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54WT1,S1,S1,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54WT1_R1_001.fastq.gz 54WT1_R2_001.fastq.gz,fastq fastq,6225284142.0,41319897.0,54WT1 R1 001.fastq.gz,0:75.33 1:75.33,A:1729358086;C:1392766589;G:1430690093;T:1671396108;N:1073266,75,75,,,1729358086,1392766589,1430690093,1671396108,1073266,SRX8146802,SRS6509414,SRA1067518,UPF|Genomics,UPF,2,0.92733,0.92867,0.09387,0.09333,0.71163,0.71494,0.486,0.48867,72,76,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise 59040,SRR11578955,SRX8146801,SRS6509413,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,Clo,54Clo4,54Clo4,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54Clo4 R1 001.fastq.gz|filename2:54Clo4 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54Clo4,S8,S8,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54Clo4_R1_001.fastq.gz 54Clo4_R2_001.fastq.gz,fastq fastq,6770856878.0,44915858.0,54Clo4 R1 001.fastq.gz,0:75.37 1:75.38,A:1876646232;C:1514408795;G:1561029116;T:1817557290;N:1215445,75,75,,,1876646232,1514408795,1561029116,1817557290,1215445,SRX8146801,SRS6509413,SRA1067518,UPF|Genomics,UPF,2,0.91659,0.91674,0.10388,0.10458,0.71948,0.72523,0.48917,0.4856,76,74,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise 59041,SRR11578956,SRX8146800,SRS6509412,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,Clo,54Clo3,54Clo3,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54Clo3 R1 001.fastq.gz|filename2:54Clo3 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54Clo3,S6,S6,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54Clo3_R2_001.fastq.gz 54Clo3_R1_001.fastq.gz,fastq fastq,5822390786.0,38650567.0,54Clo3 R1 001.fastq.gz,0:75.32 1:75.32,A:1619353584;C:1299190067;G:1337336722;T:1565486844;N:1023569,75,75,,,1619353584,1299190067,1337336722,1565486844,1023569,SRX8146800,SRS6509412,SRA1067518,UPF|Genomics,UPF,2,0.91509,0.91425,0.10591,0.10604,0.76386,0.7693,0.46813,0.46524,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise 59042,SRR11578957,SRX8146799,SRS6509411,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,Clo,54Clo2,54Clo2,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54Clo2 R1 001.fastq.gz|filename2:54Clo2 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54Clo2,S4,S4,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54Clo2_R2_001.fastq.gz 54Clo2_R1_001.fastq.gz,fastq fastq,6138626977.0,40727824.0,54Clo2 R1 001.fastq.gz,0:75.36 1:75.36,A:1700144556;C:1378599434;G:1420945150;T:1637894336;N:1043501,75,75,,,1700144556,1378599434,1420945150,1637894336,1043501,SRX8146799,SRS6509411,SRA1067518,UPF|Genomics,UPF,2,0.90602,0.90662,0.09596,0.09691,0.75872,0.76274,0.48174,0.48196,75,75,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise 59043,SRR11578958,SRX8146798,SRS6509410,SRP257662,PRJNA627095,Transcriptional profile of SAG neurod+ neuroblasts from clo mutant and sibling embryos at 54 hpf,PRJNA627095,Other,In many organs stem cell function depends on the communication with their niche partners. Cranial sensory neurons develop in close proximity to blood vessels however whether vasculature is an integral component of their niches is yet unknown. Here two separate novel roles for vasculature in cranial sensory neurogenesis in zebrafish are uncovered. The first involves a restrain of neuroblast proliferation at early stages. The second instead requires blood flow to trigger a transcriptional response which has been identified thanks to a RNAseq analysis. This transcriptional change modifies neuroblast metabolic status and induces sensory neuron differentiation. Altogether we demonstrate that the cranial vasculature constitutes a hitherto unrecognized niche component of the sensory ganglia that regulates the pace of their growth and differentiation dynamics.,,,Clo,54Clo1,54Clo1,,strain:TgBACneurod:gfpnl1|age:54 hpf|sex:not applicable|tissue:SAG tissue|collection date:2018 11 14|geo loc name:Spain: Barcelona|lat lon:41.3851 N 2.1734 E|filename:54Clo1 R1 001.fastq.gz|filename2:54Clo1 R2 001.fastq.gz|BioSampleModel:Model organism or animal,,,,,,,,,54Clo1,S2,S2,low input mRNA sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,NextSeq 500,,SRP257662,,,54Clo1_R1_001.fastq.gz 54Clo1_R2_001.fastq.gz,fastq fastq,7414571165.0,49175642.0,54Clo1 R1 001.fastq.gz,0:75.39 1:75.39,A:2056892212;C:1660481957;G:1708780731;T:1987161426;N:1254839,75,75,,,2056892212,1660481957,1708780731,1987161426,1254839,SRX8146798,SRS6509410,SRA1067518,UPF|Genomics,UPF,2,0.90938,0.91029,0.1024,0.1024,0.73507,0.73852,0.48964,0.48917,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Unknown,2020-04-21,Hatching,Embryo,Undetermined,Embryo Imprecise