rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 8076,ERR2304209,ERX2355537,ERS2201745,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep3,SAMEA104590463,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590463|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep3|common name:zebrafish|sample name:Aged mutant biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12,9 psen1K97Gfshet 24mth 13 03 2014 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R1.fastq.gz 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R2.fastq.gz,fastq fastq,9318039088.0,38360343.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12,0:121.17 1:121.74,A:2583644589;C:2091813317;G:2105322994;T:2536795040;N:463148,121,121,,,2583644589,2091813317,2105322994,2536795040,463148,ERX2355537,ERS2201745,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.93003,0.92836,0.26254,0.26157,0.68992,0.69593,0.48246,0.48292,134,134,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8077,ERR2304208,ERX2355536,ERS2201744,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep2,SAMEA104590462,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590462|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep2|common name:zebrafish|sample name:Aged mutant biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11,8 psen1K97Gfshet 24mth 13 03 2014 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R1.fastq.gz 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R2.fastq.gz,fastq fastq,8559244581.0,35608377.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11,0:119.87 1:120.50,A:2397336730;C:1892236963;G:1910506310;T:2358778868;N:385710,119,120,,,2397336730,1892236963,1910506310,2358778868,385710,ERX2355536,ERS2201744,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92422,0.92311,0.30514,0.30437,0.69578,0.7008,0.49054,0.48857,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8078,ERR2304207,ERX2355535,ERS2201743,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep1,SAMEA104590461,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590461|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep1|common name:zebrafish|sample name:Aged mutant biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10,7 psen1K97Gfshet 24mth 13 03 2014 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R1.fastq.gz 7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R2.fastq.gz,fastq fastq,6521711648.0,27182062.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10,0:119.65 1:120.27,A:1831722484;C:1434689482;G:1449266189;T:1805677755;N:355738,119,120,,,1831722484,1434689482,1449266189,1805677755,355738,ERX2355535,ERS2201743,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92564,0.92498,0.29344,0.29212,0.69327,0.69964,0.48557,0.48942,86,86,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8079,ERR2304206,ERX2355534,ERS2201742,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep3,SAMEA104590460,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590460|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep3|common name:zebrafish|sample name:Aged wild type biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9,3 non mutant K97Gfs 24mth 13 03 2014 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R1.fastq.gz 3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R2.fastq.gz,fastq fastq,6865452019.0,28646225.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9,0:119.50 1:120.16,A:1903309108;C:1535570672;G:1550661363;T:1875578941;N:331935,119,120,,,1903309108,1535570672,1550661363,1875578941,331935,ERX2355534,ERS2201742,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92997,0.92904,0.26949,0.26497,0.69485,0.70072,0.49378,0.50075,96,96,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8080,ERR2304205,ERX2355533,ERS2201741,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep2,SAMEA104590459,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590459|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep2|common name:zebrafish|sample name:Aged wild type biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8,2 non mutant K97Gfs 24mth 13 03 2014 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R1.fastq.gz 2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R2.fastq.gz,fastq fastq,8418868343.0,34905186.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8,0:120.29 1:120.91,A:2334515884;C:1885784857;G:1900432559;T:2297775998;N:359045,120,120,,,2334515884,1885784857,1900432559,2297775998,359045,ERX2355533,ERS2201741,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.93078,0.92967,0.25478,0.25365,0.69372,0.69938,0.4988,0.49709,132,132,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8081,ERR2304204,ERX2355532,ERS2201740,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep1,SAMEA104590458,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590458|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep1|common name:zebrafish|sample name:Aged wild type biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7,1 non mutant K97Gfs 24mth 13 03 2014 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R1.fastq.gz 1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R2.fastq.gz,fastq fastq,6628468736.0,27477727.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7,0:120.31 1:120.92,A:1839014115;C:1487750495;G:1497160978;T:1804205119;N:338029,120,120,,,1839014115,1487750495,1497160978,1804205119,338029,ERX2355532,ERS2201740,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92916,0.92783,0.28453,0.28375,0.69798,0.70289,0.48132,0.48227,125,125,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8082,ERR2304203,ERX2355531,ERS2201739,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep3,SAMEA104590457,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590457|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep3|common name:zebrafish|sample name:Young mutant biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6,12 psen1K97Gfshet 6mth 10 03 2016 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R1.fastq.gz 12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R2.fastq.gz,fastq fastq,11485397100.0,38284657.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6,0:150 1:150,A:3206707597;C:2539306860;G:2721427816;T:3015264084;N:2690743,150,150,,,3206707597,2539306860,2721427816,3015264084,2690743,ERX2355531,ERS2201739,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92853,0.92813,0.26757,0.26433,0.68487,0.68903,0.47708,0.47074,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8083,ERR2304202,ERX2355530,ERS2201738,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep2,SAMEA104590456,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590456|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep2|common name:zebrafish|sample name:Young mutant biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5,11 psen1K97Gfshet 6mth 10 03 2016 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R1.fastq.gz 11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R2.fastq.gz,fastq fastq,13258122000.0,44193740.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5,0:150 1:150,A:3781076311;C:2868334319;G:3063279426;T:3542309854;N:3122090,150,150,,,3781076311,2868334319,3063279426,3542309854,3122090,ERX2355530,ERS2201738,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91552,0.91659,0.32337,0.32168,0.69546,0.698,0.4697,0.47295,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8084,ERR2304201,ERX2355529,ERS2201737,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep1,SAMEA104590455,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590455|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep1|common name:zebrafish|sample name:Young mutant biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4,10 psen1K97Gfshet 6mth 10 03 2016 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R1.fastq.gz 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R2.fastq.gz,fastq fastq,11724649800.0,39082166.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4,0:150 1:150,A:3304100658;C:2560616667;G:2779636286;T:3077545106;N:2751083,150,150,,,3304100658,2560616667,2779636286,3077545106,2751083,ERX2355529,ERS2201737,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92121,0.91893,0.28263,0.27928,0.69073,0.6953,0.47174,0.46157,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8085,ERR2304200,ERX2355528,ERS2201736,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep3,SAMEA104590454,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590454|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep3|common name:zebrafish|sample name:Young wild type biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3,6 non mutant K97Gfs 6mth 10 03 2016 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R1.fastq.gz 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R2.fastq.gz,fastq fastq,24923212200.0,83077374.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3,0:150 1:150,A:7077378299;C:5398402396;G:5838059014;T:6604505033;N:4867458,150,150,,,7077378299,5398402396,5838059014,6604505033,4867458,ERX2355528,ERS2201736,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91973,0.92144,0.29148,0.29015,0.69587,0.69994,0.46145,0.47047,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8086,ERR2304199,ERX2355527,ERS2201735,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep2,SAMEA104590453,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590453|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep2|common name:zebrafish|sample name:Young wild type biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2,5 non mutant K97Gfs 6mth 10 03 2016 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R1.fastq.gz 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R2.fastq.gz,fastq fastq,7840317153.0,39006553.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2,0:101 1:100,A:2200490653;C:1718458832;G:1730278863;T:2188900320;N:2188485,101,100,,,2200490653,1718458832,1730278863,2188900320,2188485,ERX2355527,ERS2201735,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91783,0.91983,0.32092,0.32105,0.67714,0.67691,0.47312,0.47481,101,100,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 8087,ERR2304198,ERX2355526,ERS2201734,ERP106721,PRJEB24858,Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep1,SAMEA104590452,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590452|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep1|common name:zebrafish|sample name:Young wild type biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1,4 non mutant K97Gfs 6mth 10 03 2016 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R2.fastq.gz,fastq fastq,13910901600.0,46369672.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1,0:150 1:150,A:3994738757;C:2957179645;G:3191379676;T:3764325893;N:3277629,150,150,,,3994738757,2957179645,3191379676,3764325893,3277629,ERX2355526,ERS2201734,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91399,0.9166,0.3202,0.31818,0.6942,0.698,0.46902,0.47111,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System 35992,SRR33967648,SRX29166369,SRS25367088,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 5,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 5,M50 5,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_5_1.fq.gz M50_5_2.fq.gz,fastq fastq,5682275100.0,18940917.0,M50 5 1.fq.gz,0:150 1:150,A:1475455936;C:1352416727;G:1390067010;T:1463846184;N:489243,150,150,,,1475455936,1352416727,1390067010,1463846184,489243,SRX29166369,SRS25367088,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 35993,SRR33967649,SRX29166368,SRS25367085,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 4,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 4,M50 4,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_4_1.fq.gz M50_4_2.fq.gz,fastq fastq,6862983600.0,22876612.0,M50 4 1.fq.gz,0:150 1:150,A:1826390013;C:1586928364;G:1633332758;T:1815810150;N:522315,150,150,,,1826390013,1586928364,1633332758,1815810150,522315,SRX29166368,SRS25367085,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 35994,SRR33967650,SRX29166367,SRS25367086,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 3,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 3,M50 3,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_3_1.fq.gz M50_3_2.fq.gz,fastq fastq,5489986200.0,18299954.0,M50 3 1.fq.gz,0:150 1:150,A:1414309279;C:1315802474;G:1358108216;T:1401292283;N:473948,150,150,,,1414309279,1315802474,1358108216,1401292283,473948,SRX29166367,SRS25367086,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 35995,SRR33967651,SRX29166366,SRS25367084,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 2,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 2,M50 2,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_2_1.fq.gz M50_2_2.fq.gz,fastq fastq,6673397100.0,22244657.0,M50 2 1.fq.gz,0:150 1:150,A:1750486905;C:1567228841;G:1614796130;T:1740308412;N:576812,150,150,,,1750486905,1567228841,1614796130,1740308412,576812,SRX29166366,SRS25367084,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 35996,SRR33967652,SRX29166365,SRS25367083,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 1,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 1,M50 1,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_1_1.fq.gz M50_1_2.fq.gz,fastq fastq,6508024200.0,21693414.0,M50 1 1.fq.gz,0:150 1:150,A:1715300095;C:1523089880;G:1569687900;T:1699384578;N:561747,150,150,,,1715300095,1523089880,1569687900,1699384578,561747,SRX29166365,SRS25367083,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 35997,SRR33967653,SRX29166364,SRS25367082,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 5,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 5,Control 5,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_5_1.fq.gz Control_5_2.fq.gz,fastq fastq,6336767400.0,21122558.0,Control 5 1.fq.gz,0:150 1:150,A:1722716287;C:1433692752;G:1463159195;T:1714640659;N:2558507,150,150,,,1722716287,1433692752,1463159195,1714640659,2558507,SRX29166364,SRS25367082,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 35998,SRR33967654,SRX29166363,SRS25367081,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 4,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 4,Control 4,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_4_1.fq.gz Control_4_2.fq.gz,fastq fastq,7139217600.0,23797392.0,Control 4 1.fq.gz,0:150 1:150,A:1925914867;C:1636066941;G:1659441863;T:1917461225;N:332704,150,150,,,1925914867,1636066941,1659441863,1917461225,332704,SRX29166363,SRS25367081,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 35999,SRR33967655,SRX29166362,SRS25367080,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 3,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 3,Control 3,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_3_1.fq.gz Control_3_2.fq.gz,fastq fastq,6882216000.0,22940720.0,Control 3 1.fq.gz,0:150 1:150,A:1838845535;C:1585015974;G:1626971386;T:1830054397;N:1328708,150,150,,,1838845535,1585015974,1626971386,1830054397,1328708,SRX29166362,SRS25367080,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 36000,SRR33967656,SRX29166361,SRS25367078,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 5,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 5,M200 5,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_5_1.fq.gz M200_5_2.fq.gz,fastq fastq,5990708400.0,19969028.0,M200 5 1.fq.gz,0:150 1:150,A:1562208536;C:1423005356;G:1454129452;T:1550849377;N:515679,150,150,,,1562208536,1423005356,1454129452,1550849377,515679,SRX29166361,SRS25367078,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 36001,SRR33967657,SRX29166360,SRS25367079,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 4,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 4,M200 4,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_4_1.fq.gz M200_4_2.fq.gz,fastq fastq,7171017600.0,23903392.0,M200 4 1.fq.gz,0:150 1:150,A:1895689921;C:1679415609;G:1716680481;T:1878753538;N:478051,150,150,,,1895689921,1679415609,1716680481,1878753538,478051,SRX29166360,SRS25367079,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 36002,SRR33967658,SRX29166359,SRS25367077,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 3,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 3,M200 3,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_3_1.fq.gz M200_3_2.fq.gz,fastq fastq,7072172700.0,23573909.0,M200 3 1.fq.gz,0:150 1:150,A:1846647695;C:1670426404;G:1759285280;T:1795198866;N:614455,150,150,,,1846647695,1670426404,1759285280,1795198866,614455,SRX29166359,SRS25367077,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 36003,SRR33967659,SRX29166358,SRS25367076,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 2,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 2,M200 2,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_2_1.fq.gz M200_2_2.fq.gz,fastq fastq,6922326900.0,23074423.0,M200 2 1.fq.gz,0:150 1:150,A:1833168494;C:1615473106;G:1653278971;T:1819792205;N:614124,150,150,,,1833168494,1615473106,1653278971,1819792205,614124,SRX29166358,SRS25367076,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 36004,SRR33967660,SRX29166357,SRS25367075,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 1,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 1,M200 1,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_1_1.fq.gz M200_1_2.fq.gz,fastq fastq,7116870600.0,23722902.0,M200 1 1.fq.gz,0:150 1:150,A:1884779262;C:1661148284;G:1695046505;T:1873189454;N:2707095,150,150,,,1884779262,1661148284,1695046505,1873189454,2707095,SRX29166357,SRS25367075,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 36005,SRR33967661,SRX29166356,SRS25367074,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 2,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 2,Control 2,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_2_1.fq.gz Control_2_2.fq.gz,fastq fastq,6484371600.0,21614572.0,Control 2 1.fq.gz,0:150 1:150,A:1719589818;C:1509764847;G:1540256063;T:1713514139;N:1246733,150,150,,,1719589818,1509764847,1540256063,1713514139,1246733,SRX29166356,SRS25367074,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 36006,SRR33967662,SRX29166355,SRS25367073,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 1,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 1,Control 1,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_1_1.fq.gz Control_1_2.fq.gz,fastq fastq,6782206800.0,22607356.0,Control 1 1.fq.gz,0:150 1:150,A:1814302219;C:1560333202;G:1602725364;T:1804365566;N:480449,150,150,,,1814302219,1560333202,1602725364,1804365566,480449,SRX29166355,SRS25367073,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System 52216,SRR9164636,SRX5937422,SRS4850458,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,wt +/+ 3dpf 3,wt +/+ 3dpf 3,,filename:L1700046 Probe 20 plus plus 3dpf 1 2.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,wt +/+ 3dpf 3,wt +/+ 3dpf 3,wt +/+ 3dpf 3,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700046_Probe_20_plus_plus_3dpf_1_2.fq.gz,fastq,2506233674.0,16597574.0,L1700046 Probe 20 plus plus 3dpf 1 2.fq.gz,0:151 1:0,A:634000443;C:604069545;G:613398240;T:654463196;N:302250,151,0,,,634000443,604069545,613398240,654463196,302250,SRX5937422,SRS4850458,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.96178,,0.07984,,0.72125,,0.48053,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52217,SRR9164637,SRX5937421,SRS4850457,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,wt +/+ 3dpf 2,wt +/+ 3dpf 2,,filename:L1700052 Probe 14 plus plus 3dpf 4.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,wt +/+ 3dpf 2,wt +/+ 3dpf 2,wt +/+ 3dpf 2,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700052_Probe_14_plus_plus_3dpf_4.fq.gz,fastq,2552457794.0,16903694.0,L1700052 Probe 14 plus plus 3dpf 4.fq.gz,0:151 1:0,A:645631711;C:614227022;G:612129428;T:680168081;N:301552,151,0,,,645631711,614227022,612129428,680168081,301552,SRX5937421,SRS4850457,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.96269,,0.07747,,0.71871,,0.48604,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52218,SRR9164638,SRX5937420,SRS4850456,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,fgf3t24152 / 7dpf 2,fgf3t24152 / 7dpf 2,,filename:L1700048 Probe 22 minus minus 7dpf 4 5.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,fgf3t24152 / 7dpf 2,fgf3t24152 / 7dpf 2,fgf3t24152 / 7dpf 2,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700048_Probe_22_minus_minus_7dpf_4_5.fq.gz,fastq,2516535951.0,16665801.0,L1700048 Probe 22 minus minus 7dpf 4 5.fq.gz,0:151 1:0,A:660865986;C:587075382;G:595275252;T:673011628;N:307703,151,0,,,660865986,587075382,595275252,673011628,307703,SRX5937420,SRS4850456,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.9567,,0.10788,,0.7134,,0.51087,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52219,SRR9164639,SRX5937419,SRS4850455,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,fgf3t24152 / 7dpf 1,fgf3t24152 / 7dpf 1,,filename:L1700047 Probe 21 minus minus 7dpf 1 2.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,fgf3t24152 / 7dpf 1,fgf3t24152 / 7dpf 1,fgf3t24152 / 7dpf 1,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700047_Probe_21_minus_minus_7dpf_1_2.fq.gz,fastq,2466014673.0,16331223.0,L1700047 Probe 21 minus minus 7dpf 1 2.fq.gz,0:151 1:0,A:625570716;C:591147110;G:589476430;T:659526551;N:293866,151,0,,,625570716,591147110,589476430,659526551,293866,SRX5937419,SRS4850455,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.95779,,0.09881,,0.71206,,0.49427,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52220,SRR9164640,SRX5937418,SRS4850454,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,fgf3t24152 / 3dpf 2,fgf3t24152 / 3dpf 2,,filename:L1700045 Probe 19 minus minus 3dpf 3 4 5.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,fgf3t24152 / 3dpf 2,fgf3t24152 / 3dpf 2,fgf3t24152 / 3dpf 2,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700045_Probe_19_minus_minus_3dpf_3_4_5.fq.gz,fastq,2409258605.0,15955355.0,L1700045 Probe 19 minus minus 3dpf 3 4 5.fq.gz,0:151 1:0,A:608760544;C:578294028;G:574909172;T:647001344;N:293517,151,0,,,608760544,578294028,574909172,647001344,293517,SRX5937418,SRS4850454,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.96392,,0.07974,,0.71467,,0.47801,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52221,SRR9164641,SRX5937417,SRS4850453,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,fgf3t24152 / 3dpf 1,fgf3t24152 / 3dpf 1,,filename:L1700044 Probe 1 minus minus 3dpf 1.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,fgf3t24152 / 3dpf 1,fgf3t24152 / 3dpf 1,fgf3t24152 / 3dpf 1,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700044_Probe_1_minus_minus_3dpf_1.fq.gz,fastq,2424787596.0,16058196.0,L1700044 Probe 1 minus minus 3dpf 1.fq.gz,0:151 1:0,A:605667403;C:588658821;G:580998119;T:649175582;N:287671,151,0,,,605667403,588658821,580998119,649175582,287671,SRX5937417,SRS4850453,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.96678,,0.07043,,0.72151,,0.4886,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52222,SRR9164642,SRX5937416,SRS4850452,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,wt +/+ 7dpf 3,wt +/+ 7dpf 3,,filename:L1700055 Probe 16 plus plus 7dpf 4.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,wt +/+ 7dpf 3,wt +/+ 7dpf 3,wt +/+ 7dpf 3,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700055_Probe_16_plus_plus_7dpf_4.fq.gz,fastq,2406426147.0,15936597.0,L1700055 Probe 16 plus plus 7dpf 4.fq.gz,0:151 1:0,A:621628027;C:570510169;G:570560525;T:643440348;N:287078,151,0,,,621628027,570510169,570560525,643440348,287078,SRX5937416,SRS4850452,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.95873,,0.09322,,0.70849,,0.50116,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52223,SRR9164643,SRX5937415,SRS4850451,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,wt +/+ 7dpf 2,wt +/+ 7dpf 2,,filename:L1700054 Probe 11 plus plus 7dpf 2.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,wt +/+ 7dpf 2,wt +/+ 7dpf 2,wt +/+ 7dpf 2,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700054_Probe_11_plus_plus_7dpf_2.fq.gz,fastq,2388621586.0,15818686.0,L1700054 Probe 11 plus plus 7dpf 2.fq.gz,0:151 1:0,A:604867119;C:572969413;G:574552382;T:635946570;N:286102,151,0,,,604867119,572969413,574552382,635946570,286102,SRX5937415,SRS4850451,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.9601,,0.08858,,0.71226,,0.4818,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52224,SRR9164644,SRX5937414,SRS4850450,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,wt +/+ 3dpf 1,wt +/+ 3dpf 1,,filename:L1700051 Probe 6 plus plus 3dpf 3.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,wt +/+ 3dpf 1,wt +/+ 3dpf 1,wt +/+ 3dpf 1,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700051_Probe_6_plus_plus_3dpf_3.fq.gz,fastq,2516841877.0,16667827.0,L1700051 Probe 6 plus plus 3dpf 3.fq.gz,0:151 1:0,A:638504042;C:602279329;G:599178016;T:676575909;N:304581,151,0,,,638504042,602279329,599178016,676575909,304581,SRX5937414,SRS4850450,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.96561,,0.07463,,0.72054,,0.48315,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52225,SRR9164645,SRX5937413,SRS4850449,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,wt +/+ 7dpf 1,wt +/+ 7dpf 1,,filename:L1700049 Probe 23 plus plus 7dpf 1 3.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,wt +/+ 7dpf 1,wt +/+ 7dpf 1,wt +/+ 7dpf 1,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700049_Probe_23_plus_plus_7dpf_1_3.fq.gz,fastq,2811795311.0,18621161.0,L1700049 Probe 23 plus plus 7dpf 1 3.fq.gz,0:151 1:0,A:718804998;C:669270370;G:672469872;T:750915840;N:334231,151,0,,,718804998,669270370,672469872,750915840,334231,SRX5937413,SRS4850449,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.95734,,0.09739,,0.71256,,0.48704,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52226,SRR9164646,SRX5937412,SRS4850448,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,fgf3t24152 / 7dpf 3,fgf3t24152 / 7dpf 3,,filename:L1700053 Probe 9 minus minus 7dpf 3.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,fgf3t24152 / 7dpf 3,fgf3t24152 / 7dpf 3,fgf3t24152 / 7dpf 3,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700053_Probe_9_minus_minus_7dpf_3.fq.gz,fastq,2201563390.0,14579890.0,L1700053 Probe 9 minus minus 7dpf 3.fq.gz,0:151 1:0,A:559541557;C:523434389;G:527775051;T:590547674;N:264719,151,0,,,559541557,523434389,527775051,590547674,264719,SRX5937412,SRS4850448,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.95732,,0.09772,,0.70678,,0.49199,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 52227,SRR9164647,SRX5937411,SRS4850447,SRP199963,PRJNA541414,Danio rerio Raw sequence reads,PRJNA541414,Other,In most vertebrates including zebrafish the hypothalamicserotonergic cerebrospinal fluid contacting CSF c cells constitutea prominent population. In contrast to the hindbrain serotonergicneurons little is known about the development and function of thesecells. Here we identify fibroblast growth factor Fgf 3 as the main Fgfligand controlling the ontogeny of serotonergic CSF c cells. We showthat fgf3 positively regulates the number of serotonergic CSF c cells as well as a subset of dopaminergic and neuroendocrine cells in theposterior hypothalamus via control of proliferation and cell survival.Further expression of the ETS domain transcription factor etv5b isdownregulated post fgf3 impairment. Previous findings identifiedetv5b as critical for the proliferation of serotonergic progenitors in thehypothalamus and therefore we now suggest that Fgf3 acts via etv5bduring early development to ultimately control the number of matureserotonergic CSF c cells. Moreover our analysis of the developinghypothalamic transcriptome shows that the expression of fgf3 isupregulated upon fgf3 loss of function suggesting activation of a self compensatory mechanism. Together these results highlight Fgf3 in anovel context as part of a signalling pathway of critical importance forhypothalamic development.,,,,fgf3t24152 / 3dpf 3,fgf3t24152 / 3dpf 3,,filename:L1700050 Probe 2 minus minus 3dpf 2.fq.gz|strain:Tuebingen|dev stage:embryo|sex:not determined|tissue:hypothalamus|BioSampleModel:Model organism or animal,,,,,,,,,fgf3t24152 / 3dpf 3,fgf3t24152 / 3dpf 3,fgf3t24152 / 3dpf 3,library preparation was performed according to the Illumina TruSeq stranded mRNA Samples Preparation Guide with 100 ng of input RNA and 15 PCR cycles,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP199963,,,L1700050_Probe_2_minus_minus_3dpf_2.fq.gz,fastq,2555431890.0,16923390.0,L1700050 Probe 2 minus minus 3dpf 2.fq.gz,0:151 1:0,A:649509144;C:614610346;G:607297438;T:683712219;N:302743,151,0,,,649509144,614610346,607297438,683712219,302743,SRX5937411,SRS4850447,SRA892447,University of Wuerzburg|Department for Physiological Chemistry,University of Wuerzburg,1,0.96502,,0.07688,,0.72381,,0.4855,,151,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Germany,2019-05-31,Larval,Larval,Brain,Nervous System 55677,SRR10728571,SRX7404696,SRS5852273,SRP238052,PRJNA596441,Brain sex Differentiation,PRJNA596441,Other,Brain sex differentiation,,,,KO 3,ORUCHN12456,,strain:AB|isolate:Brain 3.2|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,Wild type brain,AHKYT7DSXX S61,AHKYT7DSXX S61,RNA cDNA fragmentation sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP238052,,,S061_gooalgene-aabrain3_AHKYT7DSXX_S61_L001_001_1.fastq S061_gooalgene-aabrain3_AHKYT7DSXX_S61_L001_001_2.fastq,fastq fastq,6085815300.0,20286051.0,S061 gooalgene aabrain3 AHKYT7DSXX S61 L001 001 1.fastq,0:150 1:150,A:1724932230;C:1317473973;G:1374151780;T:1669206179;N:51138,150,150,,,1724932230,1317473973,1374151780,1669206179,51138,SRX7404696,SRS5852273,SRA1013773,orebro University|School of Science and Technology,orebro University,2,0.9231,0.91987,0.17106,0.17073,0.70234,0.70601,0.48521,0.48535,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Sweden,2019-12-18,Adult,Adult,Brain,Nervous System 55678,SRR10728572,SRX7404695,SRS5852274,SRP238052,PRJNA596441,Brain sex Differentiation,PRJNA596441,Other,Brain sex differentiation,,,,KO 2,ORUCHN12455,,strain:AB|isolate:Brain 3.1|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,Wild type brain,AHKYT7DSXX S60,AHKYT7DSXX S60,RNA cDNA fragmentation sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP238052,,,S060_gooalgene-aabrain2_AHKYT7DSXX_S60_L001_001_1.fastq S060_gooalgene-aabrain2_AHKYT7DSXX_S60_L001_001_2.fastq,fastq fastq,6412146000.0,21373820.0,S060 gooalgene aabrain2 AHKYT7DSXX S60 L001 001 1.fastq,0:150 1:150,A:1818102509;C:1381306760;G:1470846044;T:1741841406;N:49281,150,150,,,1818102509,1381306760,1470846044,1741841406,49281,SRX7404695,SRS5852274,SRA1013773,orebro University|School of Science and Technology,orebro University,2,0.92216,0.91649,0.16734,0.16488,0.70256,0.70713,0.48061,0.48416,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Sweden,2019-12-18,Adult,Adult,Brain,Nervous System 55679,SRR10728573,SRX7404694,SRS5852272,SRP238052,PRJNA596441,Brain sex Differentiation,PRJNA596441,Other,Brain sex differentiation,,,,KO 1,ORUCHN12454,,strain:AB|isolate:Brain 2.2|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,Wild type brain,AHKYT7DSXX S59,AHKYT7DSXX S59,RNA cDNA fragmentation sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP238052,,,S059_gooalgene-aabrain1_AHKYT7DSXX_S59_L001_001_1.fastq S059_gooalgene-aabrain1_AHKYT7DSXX_S59_L001_001_2.fastq,fastq fastq,6234932700.0,20783109.0,S059 gooalgene aabrain1 AHKYT7DSXX S59 L001 001 1.fastq,0:150 1:150,A:1778445403;C:1340616220;G:1412409199;T:1703411736;N:50142,150,150,,,1778445403,1340616220,1412409199,1703411736,50142,SRX7404694,SRS5852272,SRA1013773,orebro University|School of Science and Technology,orebro University,2,0.92052,0.91571,0.16657,0.1645,0.70035,0.70449,0.48728,0.48687,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Sweden,2019-12-18,Adult,Adult,Brain,Nervous System 55680,SRR10728574,SRX7404693,SRS5852271,SRP238052,PRJNA596441,Brain sex Differentiation,PRJNA596441,Other,Brain sex differentiation,,,,WT 3,ORUCHN12453,,strain:AB|isolate:Brain 2.1|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,Wild type brain,AHKYT7DSXX S58,AHKYT7DSXX S58,RNA cDNA fragmentation sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP238052,,,S058_gooalgene-AAbrain3_AHKYT7DSXX_S58_L001_001_1.fastq S058_gooalgene-AAbrain3_AHKYT7DSXX_S58_L001_001_2.fastq,fastq fastq,6021783600.0,20072612.0,S058 gooalgene AAbrain3 AHKYT7DSXX S58 L001 001 1.fastq,0:150 1:150,A:1694325953;C:1315433478;G:1376982980;T:1634993656;N:47533,150,150,,,1694325953,1315433478,1376982980,1634993656,47533,SRX7404693,SRS5852271,SRA1013773,orebro University|School of Science and Technology,orebro University,2,0.92316,0.9198,0.15697,0.15577,0.70368,0.70745,0.48523,0.4837,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Sweden,2019-12-18,Adult,Adult,Brain,Nervous System 55681,SRR10728575,SRX7404692,SRS5852270,SRP238052,PRJNA596441,Brain sex Differentiation,PRJNA596441,Other,Brain sex differentiation,,,,WT 2,ORUCHN12452,,strain:AB|isolate:Brain 1.2|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,Wild type brain,AHKYT7DSXX S57,AHKYT7DSXX S57,RNA cDNA fragmentation sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP238052,,,S057_gooalgene-AAbrain2_AHKYT7DSXX_S57_L001_001_1.fastq S057_gooalgene-AAbrain2_AHKYT7DSXX_S57_L001_001_2.fastq,fastq fastq,6265927200.0,20886424.0,S057 gooalgene AAbrain2 AHKYT7DSXX S57 L001 001 1.fastq,0:150 1:150,A:1766620690;C:1365008978;G:1424887257;T:1709358692;N:51583,150,150,,,1766620690,1365008978,1424887257,1709358692,51583,SRX7404692,SRS5852270,SRA1013773,orebro University|School of Science and Technology,orebro University,2,0.92321,0.92013,0.16,0.15891,0.70074,0.70421,0.48911,0.4851,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Sweden,2019-12-18,Adult,Adult,Brain,Nervous System 55682,SRR10728576,SRX7404691,SRS5852269,SRP238052,PRJNA596441,Brain sex Differentiation,PRJNA596441,Other,Brain sex differentiation,,,,WT 1,ORUCHN12451,,strain:AB|isolate:Brain 1.1|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,Wild type brain,AHKYT7DSXX S56,AHKYT7DSXX S56,RNA cDNA fragmentation sequencing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP238052,,,S056_gooalgene-AAbrain1_AHKYT7DSXX_S56_L001_001_2.fastq S056_gooalgene-AAbrain1_AHKYT7DSXX_S56_L001_001_1.fastq,fastq fastq,5988733500.0,19962445.0,S056 gooalgene AAbrain1 AHKYT7DSXX S56 L001 001 1.fastq,0:150 1:150,A:1674537073;C:1315886701;G:1375949825;T:1622311719;N:48182,150,150,,,1674537073,1315886701,1375949825,1622311719,48182,SRX7404691,SRS5852269,SRA1013773,orebro University|School of Science and Technology,orebro University,2,0.92322,0.91988,0.15291,0.15167,0.69503,0.69812,0.47679,0.48577,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Sweden,2019-12-18,Adult,Adult,Brain,Nervous System 59293,SRR11814645,SRX8365674,SRS6681530,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,OC 1,,strain:AB|age:1 year|sex:not applicable|tissue:Optic tectum|health state:Uninfected|treatment:Optic tectum uninfected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,OC 1,OC 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,OC_2.fq.gz OC_1.fq.gz,fastq fastq,6787281600.0,22624272.0,OC 1.fq.gz,0:150 1:150,A:1951938141;C:1461285021;G:1461034248;T:1913015244;N:8946,150,150,,,1951938141,1461285021,1461034248,1913015244,8946,SRX8365674,SRS6681530,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.92226,0.92477,0.11882,0.11909,0.7329,0.73304,0.53542,0.53542,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 59294,SRR11814646,SRX8365673,SRS6681529,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,HI 1,,strain:AB|age:1 year|sex:not applicable|tissue:Hypothalamus|health state:Infected|treatment:Hypothalamus infected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,HI 1,HI 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,HI_1.fq.gz HI_2.fq.gz,fastq fastq,6002017500.0,20006725.0,HI 1.fq.gz,0:150 1:150,A:1667184319;C:1340786083;G:1351603192;T:1642337018;N:106888,150,150,,,1667184319,1340786083,1351603192,1642337018,106888,SRX8365673,SRS6681529,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.91922,0.9196,0.10248,0.10247,0.71603,0.71622,0.5257,0.51323,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 59295,SRR11814647,SRX8365672,SRS6681528,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,HC 1,,strain:AB|age:1 year|sex:not applicable|tissue:Hypothalamus|health state:Uninfected|treatment:Hypothalamus uninfected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,HC 1,HC 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,HC_2.fq.gz HC_1.fq.gz,fastq fastq,6697932000.0,22326440.0,HC 1.fq.gz,0:150 1:150,A:1863509966;C:1494301312;G:1506998035;T:1832987995;N:134692,150,150,,,1863509966,1494301312,1506998035,1832987995,134692,SRX8365672,SRS6681528,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.90392,0.90614,0.09797,0.09784,0.72689,0.72683,0.54762,0.54667,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 59296,SRR11814648,SRX8365671,SRS6681527,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,BI 1,,strain:AB|age:1 year|sex:not applicable|tissue:Brain stem|health state:Infected|treatment:Brain stem infected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,BI 1,BI 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,BI_2.fq.gz BI_1.fq.gz,fastq fastq,7100319000.0,23667730.0,BI 1.fq.gz,0:150 1:150,A:2001207205;C:1560833611;G:1572830593;T:1965318929;N:128662,150,150,,,2001207205,1560833611,1572830593,1965318929,128662,SRX8365671,SRS6681527,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.916,0.91719,0.10807,0.10739,0.7153,0.71437,0.5157,0.51352,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 59297,SRR11814649,SRX8365670,SRS6681526,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,TI 1,,strain:AB|age:1 year|sex:not applicable|tissue:Telencephalon|health state:Infected|treatment:Telencephalon infected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,TI 1,TI 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,TI_1.fq.gz TI_2.fq.gz,fastq fastq,6264203400.0,20880678.0,TI 1.fq.gz,0:150 1:150,A:1795775798;C:1354935409;G:1353906426;T:1759577228;N:8539,150,150,,,1795775798,1354935409,1353906426,1759577228,8539,SRX8365670,SRS6681526,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.9247,0.92682,0.1181,0.11788,0.73576,0.73557,0.53311,0.53194,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 59298,SRR11814650,SRX8365669,SRS6681525,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,TC 1,,strain:AB|age:1 year|sex:not applicable|tissue:Telencephalon|health state:Uninfected|treatment:Telencephalon uninfected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,TC 1,TC 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,TC_2.fq.gz TC_1.fq.gz,fastq fastq,6476121300.0,21587071.0,TC 1.fq.gz,0:150 1:150,A:1853595578;C:1402385797;G:1405275145;T:1814855867;N:8913,150,150,,,1853595578,1402385797,1405275145,1814855867,8913,SRX8365669,SRS6681525,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.9211,0.92365,0.11192,0.11165,0.72981,0.72922,0.53312,0.53459,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 59299,SRR11814651,SRX8365668,SRS6681524,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,OI 1,,strain:AB|age:1 year|sex:not applicable|tissue:Optic tectum|health state:Infected|treatment:Optic tectum infected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,OI 1,OI 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,OI_1.fq.gz OI_2.fq.gz,fastq fastq,6807639300.0,22692131.0,OI 1.fq.gz,0:150 1:150,A:1901077790;C:1512383812;G:1522750763;T:1871304667;N:122268,150,150,,,1901077790,1512383812,1522750763,1871304667,122268,SRX8365668,SRS6681524,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.92096,0.9223,0.10816,0.10876,0.71514,0.71494,0.53997,0.54072,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 59300,SRR11814652,SRX8365667,SRS6681523,SRP262372,PRJNA633905,Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio,PRJNA633905,Other,Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.,,,,,BC 1,,strain:AB|age:1 year|sex:not applicable|tissue:Brain stem|health state:Uninfected|treatment:Brain stem uninfected 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,BC 1,BC 1,mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP262372,,,BC_1.fq.gz BC_2.fq.gz,fastq fastq,6526344600.0,21754482.0,BC 1.fq.gz,0:150 1:150,A:1838952986;C:1435206004;G:1446578320;T:1805489595;N:117695,150,150,,,1838952986,1435206004,1446578320,1805489595,117695,SRX8365667,SRS6681523,SRA1077155,Norwegian University of Life Sciences|Nutrition,Norwegian University of Life Sciences,2,0.91429,0.91584,0.10822,0.10786,0.71725,0.71685,0.51793,0.51793,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2020-05-19,Adult,Adult,Brain,Nervous System 60842,SRR12569149,SRX9057254,SRS7306637,SRP279716,PRJNA660936,neuron RNA sequence,PRJNA660936,Other,exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron,,,,,hg cq55 4,,strain:not applicable|isolate:replicate hg cq55 3 isolate|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,neuron RNA sequence,hg cq55 4,hg cq55 4,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279716,,,mut2_3dpf_huC_GFP_R2.fq.gz mut2_3dpf_huC_GFP_R1.fq.gz,fastq fastq,5553754600.0,27768773.0,mut2 3dpf huC GFP R1.fq.gz,0:100 1:100,A:1742480175;C:1080961705;G:1069343239;T:1658240146;N:2729335,100,100,,,1742480175,1080961705,1069343239,1658240146,2729335,SRX9057254,SRS7306637,SRA1120054,southwest university|College of Life Science,southwest university,2,0.84455,0.83818,0.35011,0.34678,0.80077,0.80495,0.53816,0.52895,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-02,Larval,Larval,Brain,Nervous System 60843,SRR12569150,SRX9057253,SRS7306636,SRP279716,PRJNA660936,neuron RNA sequence,PRJNA660936,Other,exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron,,,,,hg cq55 3,,strain:not applicable|isolate:neuron cells from cq55 zebrafish brain|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,neuron RNA sequence,hg cq55 3,hg cq55 3,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279716,,,mut1_3dpf_huC_GFP_R1.fq.gz mut1_3dpf_huC_GFP_R2.fq.gz,fastq fastq,5327979250.0,21311917.0,mut1 3dpf huC GFP R1.fq.gz,0:125 1:125,A:1718961802;C:967989219;G:966412948;T:1674354049;N:261232,125,125,,,1718961802,967989219,966412948,1674354049,261232,SRX9057253,SRS7306636,SRA1120054,southwest university|College of Life Science,southwest university,2,0.86362,0.86453,0.37415,0.37612,0.80101,0.80277,0.54685,0.54842,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-02,Larval,Larval,Brain,Nervous System 60844,SRR12569151,SRX9057252,SRS7306635,SRP279716,PRJNA660936,neuron RNA sequence,PRJNA660936,Other,exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron,,,,,hg wt 2,,strain:not applicable|isolate:replicate hg wt 1 isolate|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,neuron RNA sequence,hg wt 2,hg wt 2,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279716,,,wt2_3dpf_huC_GFP_R1.fq.gz wt2_3dpf_huC_GFP_R2.fq.gz,fastq fastq,5068139400.0,25340697.0,wt2 3dpf huC GFP R1.fq.gz,0:100 1:100,A:1567712110;C:989575944;G:973087045;T:1535828354;N:1935947,100,100,,,1567712110,989575944,973087045,1535828354,1935947,SRX9057252,SRS7306635,SRA1120054,southwest university|College of Life Science,southwest university,2,0.89709,0.88454,0.31576,0.30572,0.77632,0.7781,0.50444,0.53198,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-02,Larval,Larval,Brain,Nervous System 60845,SRR12569152,SRX9057251,SRS7306634,SRP279716,PRJNA660936,neuron RNA sequence,PRJNA660936,Other,exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron,,,,,hg wt 1,,strain:not applicable|isolate:neuron cells from wt zebrafish brain|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,neuron RNA sequence,hg wt 1,hg wt 1,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279716,,,wt1_3dpf_huC_GFP_R1.fq.gz wt1_3dpf_huC_GFP_R2.fq.gz,fastq fastq,5019434250.0,20077737.0,wt1 3dpf huC GFP R1.fq.gz,0:125 1:125,A:1570719296;C:963411212;G:958623651;T:1526437632;N:242459,125,125,,,1570719296,963411212,958623651,1526437632,242459,SRX9057251,SRS7306634,SRA1120054,southwest university|College of Life Science,southwest university,2,0.9154,0.9156,0.3181,0.31852,0.77658,0.77697,0.51483,0.51799,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-02,Larval,Larval,Brain,Nervous System 60846,SRR12578018,SRX9064899,SRS7314059,SRP279884,PRJNA661142,microglia RNA sequence,PRJNA661142,Other,we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression,,,,,mut ck 3,,strain:not applicable|isolate:mut ck 1 rep3|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,microglia RNA sequence,mut ck 3,mut ck 3,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279884,,,mut3-cK_R1.fq.gz mut3-cK_R2.fq.gz,fastq fastq,4760165600.0,23800828.0,mut3 cK R1.fq.gz,0:100 1:100,A:1364510425;C:1045107670;G:1037215034;T:1311220297;N:2112174,100,100,,,1364510425,1045107670,1037215034,1311220297,2112174,SRX9064899,SRS7314059,SRA1120726,southwest university|College of Life Science,southwest university,2,0.92354,0.92226,0.1264,0.1289,0.85078,0.85054,0.56126,0.54753,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-03,Larval,Larval,Brain,Nervous System 60847,SRR12578019,SRX9064898,SRS7314058,SRP279884,PRJNA661142,microglia RNA sequence,PRJNA661142,Other,we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression,,,,,mut ck 2,,strain:not applicable|isolate:mut ck 1 rep2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,microglia RNA sequence,mut ck 2,mut ck 2,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279884,,,mut2-cK_R1.fq.gz mut2-cK_R2.fq.gz,fastq fastq,4947468000.0,24737340.0,mut2 cK R1.fq.gz,0:100 1:100,A:1432233150;C:1077046875;G:1065275053;T:1371437084;N:1475838,100,100,,,1432233150,1077046875,1065275053,1371437084,1475838,SRX9064898,SRS7314058,SRA1120726,southwest university|College of Life Science,southwest university,2,0.875,0.87333,0.29106,0.29734,0.90287,0.90272,0.6533,0.65064,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-03,Larval,Larval,Brain,Nervous System 60848,SRR12578020,SRX9064897,SRS7314057,SRP279884,PRJNA661142,microglia RNA sequence,PRJNA661142,Other,we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression,,,,,mut ck 1,,strain:not applicable|isolate:photo converted red coro1a Kaede+ microglia were islated from mut zebrafish brain via Flow|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,microglia RNA sequence,mut ck 1,mut ck 1,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279884,,,mut1-cK_R1.fq.gz mut1-cK_R2.fq.gz,fastq fastq,4583500600.0,22917503.0,mut1 cK R1.fq.gz,0:100 1:100,A:1287013718;C:1036294088;G:1027392742;T:1230916656;N:1883396,100,100,,,1287013718,1036294088,1027392742,1230916656,1883396,SRX9064897,SRS7314057,SRA1120726,southwest university|College of Life Science,southwest university,2,0.93123,0.93277,0.0796,0.08122,0.85616,0.85608,0.56879,0.56531,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-03,Larval,Larval,Brain,Nervous System 60849,SRR12578021,SRX9064896,SRS7314056,SRP279884,PRJNA661142,microglia RNA sequence,PRJNA661142,Other,we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression,,,,,sib ck 4,,strain:not applicable|isolate:sib ck 2 rep3|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,microglia RNA sequence,sib ck 4,sib ck 4,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279884,,,sib4-cK_R1.fq.gz sib4-cK_R2.fq.gz,fastq fastq,5158936200.0,25794681.0,sib4 cK R1.fq.gz,0:100 1:100,A:1468168955;C:1154667548;G:1140371695;T:1394217229;N:1510773,100,100,,,1468168955,1154667548,1140371695,1394217229,1510773,SRX9064896,SRS7314056,SRA1120726,southwest university|College of Life Science,southwest university,2,0.90861,0.90861,0.10878,0.1109,0.8718,0.87217,0.59714,0.45964,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-03,Larval,Larval,Brain,Nervous System 60850,SRR12578022,SRX9064895,SRS7314055,SRP279884,PRJNA661142,microglia RNA sequence,PRJNA661142,Other,we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression,,,,,sib ck 3,,strain:not applicable|isolate:sib ck 2 rep2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,microglia RNA sequence,sib ck 3,sib ck 3,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279884,,,sib3-cK_R1.fq.gz sib3-cK_R2.fq.gz,fastq fastq,5423170800.0,27115854.0,sib3 cK R1.fq.gz,0:100 1:100,A:1572102733;C:1186819728;G:1171432686;T:1491096414;N:1719239,100,100,,,1572102733,1186819728,1171432686,1491096414,1719239,SRX9064895,SRS7314055,SRA1120726,southwest university|College of Life Science,southwest university,2,0.92496,0.92715,0.13376,0.13838,0.849,0.85074,0.60089,0.60102,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-03,Larval,Larval,Brain,Nervous System 60851,SRR12578023,SRX9064894,SRS7314054,SRP279884,PRJNA661142,microglia RNA sequence,PRJNA661142,Other,we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression,,,,,sib ck 2,,strain:not applicable|isolate:photo converted red coro1a Kaede+ ameoboid microglia were islated from wt zebrafish brain via Flow|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,microglia RNA sequence,sib ck 2,sib ck 2,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279884,,,sib2-cK_R1.fq.gz sib2-cK_R2.fq.gz,fastq fastq,4571697200.0,22858486.0,sib2 cK R1.fq.gz,0:100 1:100,A:1314307708;C:999308976;G:994304628;T:1262438024;N:1337864,100,100,,,1314307708,999308976,994304628,1262438024,1337864,SRX9064894,SRS7314054,SRA1120726,southwest university|College of Life Science,southwest university,2,0.9285,0.92891,0.11144,0.11403,0.85577,0.85508,0.58643,0.58728,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-03,Larval,Larval,Brain,Nervous System 60852,SRR12578024,SRX9064893,SRS7314053,SRP279884,PRJNA661142,microglia RNA sequence,PRJNA661142,Other,we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression,,,,,sib ck 1,,strain:not applicable|isolate:photo converted red coro1a Kaede+ thin and long microglia were islated from wt zebrafish brain via Flow|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,microglia RNA sequence,sib ck 1,sib ck 1,Flow,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP279884,,,sib1-cK_R1.fq.gz sib1-cK_R2.fq.gz,fastq fastq,4703567600.0,23517838.0,sib1 cK R1.fq.gz,0:100 1:100,A:1368380569;C:1010236864;G:1000479487;T:1322875631;N:1595049,100,100,,,1368380569,1010236864,1000479487,1322875631,1595049,SRX9064893,SRS7314053,SRA1120726,southwest university|College of Life Science,southwest university,2,0.90076,0.90285,0.23584,0.24092,0.85123,0.85052,0.48965,0.49164,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-03,Larval,Larval,Brain,Nervous System 66125,SRR15927836,SRX12217976,SRS10194179,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate2,,0.1MPa Brain 3,,strain:2|dev stage:adult|sex:female|tissue:Brain|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,0.1MPa Brain 3,0.1MPa Brain 3,0.1MPa Brain 3,control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,0.1MPa_Brain_3_1.fq.gz 0.1MPa_Brain_3_2.fq.gz,fastq fastq,17709592500.0,59031975.0,0.1MPa Brain 3 1.fq.gz,0:150 1:150,A:5050122818;C:3828301351;G:3830322874;T:5000784744;N:60713,150,150,,,5050122818,3828301351,3830322874,5000784744,60713,SRX12217976,SRS10194179,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.91481,0.91357,0.17076,0.17113,0.70309,0.70305,0.50067,0.50079,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66126,SRR15927837,SRX12217975,SRS10194178,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate1,,0.1MPa Brain 2,,strain:1|dev stage:adult|sex:female|tissue:Brain|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,0.1MPa Brain 2,0.1MPa Brain 2,0.1MPa Brain 2,control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,0.1MPa_Brain_2_1.fq.gz 0.1MPa_Brain_2_2.fq.gz,fastq fastq,19231434900.0,64104783.0,0.1MPa Brain 2 1.fq.gz,0:150 1:150,A:5427851564;C:4214562145;G:4216958048;T:5371998369;N:64774,150,150,,,5427851564,4214562145,4216958048,5371998369,64774,SRX12217975,SRS10194178,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.92168,0.92019,0.15008,0.14995,0.6982,0.6995,0.48765,0.49115,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66145,SRR15927811,SRX12217956,SRS10194158,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate3,,9MPa Brain 4,,strain:33|dev stage:adult|sex:female|tissue:Brain|treatment:9MPa4h|BioSampleModel:Model organism or animal,,,,,,,,,9MPa Brain 4,9MPa Brain 4,9MPa Brain 4,9MPa4h,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,9MPa_Brain_4_1.fq.gz 9MPa_Brain_4_2.fq.gz,fastq fastq,6363362400.0,21211208.0,9MPa Brain 4 1.fq.gz,0:150 1:150,A:1887876427;C:1310706818;G:1302669763;T:1862082531;N:26861,150,150,,,1887876427,1310706818,1302669763,1862082531,26861,SRX12217956,SRS10194158,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.92963,0.92956,0.17223,0.17242,0.72413,0.72575,0.54151,0.54142,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66146,SRR15927812,SRX12217955,SRS10194157,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate2,,9MPa Brain 3,,strain:32|dev stage:adult|sex:female|tissue:Brain|treatment:9MPa4h|BioSampleModel:Model organism or animal,,,,,,,,,9MPa Brain 3,9MPa Brain 3,9MPa Brain 3,9MPa4h,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,9MPa_Brain_3_1.fq.gz 9MPa_Brain_3_2.fq.gz,fastq fastq,6439443300.0,21464811.0,9MPa Brain 3 1.fq.gz,0:150 1:150,A:1891577867;C:1339240114;G:1333486802;T:1875108025;N:30492,150,150,,,1891577867,1339240114,1333486802,1875108025,30492,SRX12217955,SRS10194157,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.92532,0.92334,0.17909,0.17796,0.71179,0.71327,0.5147,0.51407,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66147,SRR15927813,SRX12217954,SRS10194159,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate1,,9MPa Brain 2,,strain:31|dev stage:adult|sex:female|tissue:Brain|treatment:9MPa4h|BioSampleModel:Model organism or animal,,,,,,,,,9MPa Brain 2,9MPa Brain 2,9MPa Brain 2,9MPa4h,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,9MPa_Brain_2_1.fq.gz 9MPa_Brain_2_2.fq.gz,fastq fastq,6406314600.0,21354382.0,9MPa Brain 2 1.fq.gz,0:150 1:150,A:1884855569;C:1331303630;G:1325109863;T:1865008742;N:36796,150,150,,,1884855569,1331303630,1325109863,1865008742,36796,SRX12217954,SRS10194159,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.9264,0.92492,0.17019,0.16974,0.71689,0.71814,0.51366,0.5128,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66159,SRR15927825,SRX12217942,SRS10194144,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate3,,0.1MPa Brain 4,,strain:3|dev stage:adult|sex:female|tissue:Brain|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,0.1MPa Brain 4,0.1MPa Brain 4,0.1MPa Brain 4,control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,0.1MPa_Brain_4_1.fq.gz 0.1MPa_Brain_4_2.fq.gz,fastq fastq,12513678000.0,41712260.0,0.1MPa Brain 4 1.fq.gz,0:150 1:150,A:3548749864;C:2726895166;G:2729241881;T:3508748781;N:42308,150,150,,,3548749864,2726895166,2729241881,3508748781,42308,SRX12217942,SRS10194144,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.92173,0.92074,0.14621,0.14686,0.69948,0.69968,0.49793,0.49527,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66162,SRR15927828,SRX12217939,SRS10194141,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate3,,5MPa Brain 4,,strain:18|dev stage:adult|sex:female|tissue:Brain|treatment:5MPa4h|BioSampleModel:Model organism or animal,,,,,,,,,5MPa Brain 4,5MPa Brain 4,5MPa Brain 4,5MPa4h,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,5MPa_Brain_4_1.fq.gz 5MPa_Brain_4_2.fq.gz,fastq fastq,6515732100.0,21719107.0,5MPa Brain 4 1.fq.gz,0:150 1:150,A:1895537383;C:1377015055;G:1369148404;T:1874000386;N:30872,150,150,,,1895537383,1377015055,1369148404,1874000386,30872,SRX12217939,SRS10194141,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.92449,0.9237,0.16953,0.16942,0.70796,0.70895,0.51088,0.51019,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66163,SRR15927829,SRX12217938,SRS10194140,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate2,,5MPa Brain 3,,strain:17|dev stage:adult|sex:female|tissue:Brain|treatment:5MPa4h|BioSampleModel:Model organism or animal,,,,,,,,,5MPa Brain 3,5MPa Brain 3,5MPa Brain 3,5MPa4h,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,5MPa_Brain_3_1.fq.gz 5MPa_Brain_3_2.fq.gz,fastq fastq,6693187200.0,22310624.0,5MPa Brain 3 1.fq.gz,0:150 1:150,A:1944561570;C:1414684507;G:1408582486;T:1925326111;N:32526,150,150,,,1944561570,1414684507,1408582486,1925326111,32526,SRX12217938,SRS10194140,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.925,0.92301,0.18661,0.1858,0.71713,0.71819,0.50213,0.509,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 66164,SRR15927830,SRX12217937,SRS10194139,SRP337553,PRJNA764015,Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish,PRJNA764015,Other,the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure,,,replicate1,,5MPa Brain 1,,strain:16|dev stage:adult|sex:female|tissue:Brain|treatment:5MPa4h|BioSampleModel:Model organism or animal,,,,,,,,,5MPa Brain 1,5MPa Brain 1,5MPa Brain 1,5MPa4h,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP337553,,,5MPa_Brain_1_1.fq.gz 5MPa_Brain_1_2.fq.gz,fastq fastq,6390426300.0,21301421.0,5MPa Brain 1 1.fq.gz,0:150 1:150,A:1896095519;C:1314300619;G:1303853183;T:1876147725;N:29254,150,150,,,1896095519,1314300619,1303853183,1876147725,29254,SRX12217937,SRS10194139,SRA1295954,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,2,0.92731,0.92668,0.17712,0.17702,0.71855,0.71847,0.53502,0.53458,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-09-17,Adult,Adult,Brain,Nervous System 69512,SRR18788788,SRX14888151,SRS12641616,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx ℃,18 C#1,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 10|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx,18 C#1,18 C#1,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and10 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,22_R1.fastq.gz 22_R2.fastq.gz,fastq fastq,3324021035.0,21135274.0,22 R1.fastq.gz,0:72.58 1:84.69,A:709069297;C:609813558;G:833766798;T:629234984;N:542136398,72,84,,,709069297,609813558,833766798,629234984,542136398,SRX14888151,SRS12641616,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.94692,0.94621,0.03803,0.03874,0.81042,0.83372,0.52786,0.5075,57,57,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69513,SRR18788789,SRX14888150,SRS12641615,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx.5 ℃,18.5 C#3,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 9|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx.5,18.5 C#3,18.5 C#3,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 9 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,21_R1.fastq.gz 21_R2.fastq.gz,fastq fastq,3311702356.0,21619022.0,21 R1.fastq.gz,0:73.04 1:80.14,A:732988567;C:638083975;G:717246361;T:647824727;N:575558726,73,80,,,732988567,638083975,717246361,647824727,575558726,SRX14888150,SRS12641615,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95409,0.95348,0.03411,0.03574,0.80746,0.8339,0.53211,0.52985,35,35,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69514,SRR18788790,SRX14888149,SRS12641614,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx.5 ℃,18.5 C#2,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 8|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx.5,18.5 C#2,18.5 C#2,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 8 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,20_R1.fastq.gz 20_R2.fastq.gz,fastq fastq,3451437092.0,22687504.0,20 R1.fastq.gz,0:72.23 1:79.90,A:776954554;C:665119388;G:761491377;T:686595528;N:561276245,72,79,,,776954554,665119388,761491377,686595528,561276245,SRX14888149,SRS12641614,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.9528,0.95207,0.04308,0.04432,0.79306,0.82031,0.51608,0.50226,35,35,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69515,SRR18788791,SRX14888148,SRS12641613,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx.5 ℃,18.5 C#1,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx.5,18.5 C#1,18.5 C#1,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 7 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,19_R1.fastq.gz 19_R2.fastq.gz,fastq fastq,3363483064.0,21731599.0,19 R1.fastq.gz,0:74.62 1:80.15,A:748827882;C:666974425;G:747248323;T:685069191;N:515363243,74,80,,,748827882,666974425,747248323,685069191,515363243,SRX14888148,SRS12641613,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95378,0.95181,0.04048,0.04057,0.79476,0.81586,0.52388,0.52275,35,35,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69516,SRR18788792,SRX14888147,SRS12641612,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx ℃,19 C#3,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx,19 C#3,19 C#3,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 6 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,18_R1.fastq.gz 18_R2.fastq.gz,fastq fastq,4075422508.0,24751242.0,18 R1.fastq.gz,0:78.81 1:85.85,A:992084841;C:871091022;G:981780904;T:901376584;N:329089157,78,85,,,992084841,871091022,981780904,901376584,329089157,SRX14888147,SRS12641612,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95169,0.9503,0.04552,0.04657,0.76542,0.78581,0.51902,0.5272,147,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69517,SRR18788793,SRX14888146,SRS12641611,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx ℃,19 C#2,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx,19 C#2,19 C#2,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 5 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,17_R1.fastq.gz 17_R2.fastq.gz,fastq fastq,3319147502.0,20078488.0,17 R1.fastq.gz,0:79.64 1:85.67,A:788844271;C:684668773;G:761658721;T:723476960;N:360498777,79,85,,,788844271,684668773,761658721,723476960,360498777,SRX14888146,SRS12641611,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95095,0.94994,0.04625,0.04757,0.78019,0.80365,0.52742,0.52809,35,35,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69518,SRR18788794,SRX14888145,SRS12641610,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx ℃,19 C#1,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx,19 C#1,19 C#1,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 4 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,16_R1.fastq.gz 16_R2.fastq.gz,fastq fastq,3292929669.0,18994459.0,16 R1.fastq.gz,0:81.92 1:91.44,A:783592551;C:702218018;G:834072912;T:710056483;N:262989705,81,91,,,783592551,702218018,834072912,710056483,262989705,SRX14888145,SRS12641610,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95233,0.95046,0.03768,0.03882,0.78782,0.80939,0.526,0.5228,40,40,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69519,SRR18788795,SRX14888144,SRS12641609,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx.5 ℃,19.5 C#3,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx.5,19.5 C#3,19.5 C#3,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 3 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,15_R1.fastq.gz 15_R2.fastq.gz,fastq fastq,4481393341.0,26601175.0,15 R1.fastq.gz,0:77.69 1:90.78,A:1153272216;C:912833241;G:1063171897;T:966195506;N:385920481,77,90,,,1153272216,912833241,1063171897,966195506,385920481,SRX14888144,SRS12641609,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.94773,0.94692,0.06258,0.06426,0.7489,0.78681,0.52586,0.52107,43,151,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69520,SRR18788796,SRX14888143,SRS12641608,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx ℃,18 C#3,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 12|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx,18 C#3,18 C#3,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and12 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,24_R1.fastq.gz 24_R2.fastq.gz,fastq fastq,3978368713.0,24472054.0,24 R1.fastq.gz,0:77.63 1:84.93,A:918424506;C:822360848;G:954428154;T:839856941;N:443298264,77,84,,,918424506,822360848,954428154,839856941,443298264,SRX14888143,SRS12641608,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95627,0.95469,0.03523,0.03586,0.7963,0.8145,0.51454,0.52535,150,151,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69521,SRR18788797,SRX14888142,SRS12641607,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx ℃,18 C#2,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 11|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx,18 C#2,18 C#2,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and11 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,23_R1.fastq.gz 23_R2.fastq.gz,fastq fastq,4275732751.0,25584325.0,23 R1.fastq.gz,0:79.88 1:87.24,A:1036835054;C:911113753;G:1040374540;T:948477734;N:338931670,79,87,,,1036835054,911113753,1040374540,948477734,338931670,SRX14888142,SRS12641607,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95295,0.95143,0.04014,0.04043,0.77812,0.79717,0.52438,0.53036,35,35,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69522,SRR18788798,SRX14888141,SRS12641606,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx.5 ℃,19.5 C#2,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx.5,19.5 C#2,19.5 C#2,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 2 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000 ,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,14_R1.fastq.gz 14_R2.fastq.gz,fastq fastq,4088072470.0,25250614.0,14 R1.fastq.gz,0:77.43 1:84.47,A:979787957;C:842289325;G:949394633;T:885868363;N:430732192,77,84,,,979787957,842289325,949394633,885868363,430732192,SRX14888141,SRS12641606,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95007,0.94819,0.05252,0.05302,0.76508,0.78711,0.5165,0.5232,35,35,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 69523,SRR18788799,SRX14888140,SRS12641605,SRP370761,PRJNA827490,Transcriptome of female zebrafish brains under cold stress,PRJNA827490,Whole Genome Sequencing,The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.,,,,zebrafish brain exposed to temperature at xxx.5 ℃,19.5 C#1,,strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish brain exposed to temperature at xxx.5,19.5 C#1,19.5 C#1,One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 1 g DNase I treated total RNA of each sample was used as the beginning material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP370761,,,13_R1.fastq.gz 13_R2.fastq.gz,fastq fastq,4080384883.0,24618817.0,13 R1.fastq.gz,0:77.97 1:87.77,A:993781329;C:821953352;G:935058139;T:856264709;N:473327354,77,87,,,993781329,821953352,935058139,856264709,473327354,SRX14888140,SRS12641605,SRA1405741,Chinese Academy of Sciences|Institute of Hydrobiology,Chinese Academy of Sciences,2,0.95194,0.95013,0.04684,0.04658,0.77078,0.80306,0.52964,0.5267,35,35,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,nebnext,bulk,unknown,unknown,,China,2022-04-18,Adult,Adult,Brain,Nervous System 70784,SRR20746126,SRX16766408,SRS14393173,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,SER 3,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: SER group,SER 3,SER 3,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Sertraline replication 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,SER-3_R1.fq.gz SER-3_R2.fq.gz,fastq fastq,10839550816.0,72273402.0,SER 3 R1.fq.gz,0:149.98 1:149.98,A:3182432825;C:2228831624;G:2233476394;T:3193795182;N:1014791,149,149,,,3182432825,2228831624,2233476394,3193795182,1014791,SRX16766408,SRS14393173,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.85802,,0.27151,,0.71492,,0.49972,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70785,SRR20746127,SRX16766407,SRS14393174,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,CBZ 1,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: CBZ group,CBZ 1,CBZ 1,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Carbamazepine replication 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,CBZ-1_R1.fq.gz CBZ-1_R2.fq.gz,fastq fastq,13298946064.0,88669324.0,CBZ 1 R1.fq.gz,0:149.98 1:149.98,A:3842116704;C:2809472282;G:2796455814;T:3849670272;N:1230992,149,149,,,3842116704,2809472282,2796455814,3849670272,1230992,SRX16766407,SRS14393174,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.85957,,0.25044,,0.71374,,0.50507,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70786,SRR20746128,SRX16766406,SRS14393172,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,CBZ 2,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: CBZ group,CBZ 2,CBZ 2,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Carbamazepine replication 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,CBZ-2_R1.fq.gz CBZ-2_R2.fq.gz,fastq fastq,14459829906.0,96638626.0,CBZ 2 R1.fq.gz,0:149.63 1:149.63,A:4160725430;C:3063171820;G:3052911931;T:4181655623;N:1365102,149,149,,,4160725430,3063171820,3052911931,4181655623,1365102,SRX16766406,SRS14393172,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86567,,0.25596,,0.71449,,0.50852,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70787,SRR20746129,SRX16766405,SRS14393171,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,CBZ 3,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: CBZ group,CBZ 3,CBZ 3,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Carbamazepine replication 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,CBZ-3_R1.fq.gz CBZ-3_R2.fq.gz,fastq fastq,16108957416.0,107410616.0,CBZ 3 R1.fq.gz,0:149.98 1:149.98,A:4717472386;C:3336174502;G:3327523665;T:4724722887;N:3063976,149,149,,,4717472386,3336174502,3327523665,4724722887,3063976,SRX16766405,SRS14393171,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.85405,,0.27675,,0.7263,,0.52133,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-02,Adult,Adult,Brain,Nervous System 70788,SRR20746130,SRX16766404,SRS14393170,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,OCBZ 1,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: OCBZ group,OCBZ 1,OCBZ 1,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Oxcarbazepine replication 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,OCBZ-1_R1.fq.gz OCBZ-1_R2.fq.gz,fastq fastq,16417017420.0,109717810.0,OCBZ 1 R1.fq.gz,0:149.63 1:149.63,A:4693430487;C:3496576880;G:3496747661;T:4727145866;N:3116526,149,149,,,4693430487,3496576880,3496747661,4727145866,3116526,SRX16766404,SRS14393170,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86592,,0.24491,,0.71127,,0.49356,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-02,Adult,Adult,Brain,Nervous System 70789,SRR20746131,SRX16766403,SRS14393169,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,SER 2,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: SER group,SER 2,SER 2,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Sertraline replication 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,SER-2_R1.fq.gz SER-2_R2.fq.gz,fastq fastq,15179687540.0,101219594.0,SER 2 R1.fq.gz,0:149.97 1:149.97,A:4381853152;C:3206608560;G:3192751641;T:4397058459;N:1415728,149,149,,,4381853152,3206608560,3192751641,4397058459,1415728,SRX16766403,SRS14393169,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86891,,0.2519,,0.7082,,0.48963,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70790,SRR20746132,SRX16766402,SRS14393168,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,SER 1,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: SER group,SER 1,SER 1,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Sertraline replication 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,SER-1_R1.fq.gz SER-1_R2.fq.gz,fastq fastq,14956682338.0,99910668.0,SER 1 R1.fq.gz,0:149.70 1:149.70,A:4317374732;C:3159586986;G:3152646784;T:4325675384;N:1398452,149,149,,,4317374732,3159586986,3152646784,4325675384,1398452,SRX16766402,SRS14393168,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86552,,0.25213,,0.69887,,0.50356,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70791,SRR20746133,SRX16766401,SRS14393167,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,DMSO 3,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: control group,DMSO 3,DMSO 3,RNAseq of Danio rerio: mixed brain tissue from wile type Danio rerio replication 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,DMSO-3_R1.fq.gz DMSO-3_R2.fq.gz,fastq fastq,14605275792.0,97388216.0,DMSO 3 R1.fq.gz,0:149.97 1:149.97,A:4308449195;C:3004631170;G:2992147661;T:4298702223;N:1345543,149,149,,,4308449195,3004631170,2992147661,4298702223,1345543,SRX16766401,SRS14393167,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86696,,0.25237,,0.71143,,0.5566,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70792,SRR20746134,SRX16766400,SRS14393166,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,LTG 3,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: LTG group,LTG 3,LTG 3,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to lamotrigine replication 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,LTG-3_R1.fq.gz LTG-3_R2.fq.gz,fastq fastq,11243797046.0,74969214.0,LTG 3 R1.fq.gz,0:149.98 1:149.98,A:3277664617;C:2351128090;G:2340047704;T:3272840145;N:2116490,149,149,,,3277664617,2351128090,2340047704,3272840145,2116490,SRX16766400,SRS14393166,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.85767,,0.25524,,0.71504,,0.50213,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70793,SRR20746135,SRX16766399,SRS14393165,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,LTG 2,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: LTG group,LTG 2,LTG 2,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to lamotrigine replication 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,LTG-2_R1.fq.gz LTG-2_R2.fq.gz,fastq fastq,11784576990.0,78577388.0,LTG 2 R1.fq.gz,0:149.97 1:149.97,A:3411428383;C:2475464697;G:2474273012;T:3421229296;N:2181602,149,149,,,3411428383,2475464697,2474273012,3421229296,2181602,SRX16766399,SRS14393165,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.85415,,0.25737,,0.71577,,0.49806,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70794,SRR20746136,SRX16766398,SRS14393164,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,LTG 1,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: LTG group,LTG 1,LTG 1,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to lamotrigine replication 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,LTG-1_R1.fq.gz LTG-1_R2.fq.gz,fastq fastq,16579382146.0,110792520.0,LTG 1 R1.fq.gz,0:149.64 1:149.64,A:4709411596;C:3566205553;G:3555707503;T:4744923184;N:3134310,149,149,,,4709411596,3566205553,3555707503,4744923184,3134310,SRX16766398,SRS14393164,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86813,,0.23848,,0.7055,,0.48832,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-02,Adult,Adult,Brain,Nervous System 70795,SRR20746137,SRX16766397,SRS14393162,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,OCBZ 3,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: OCBZ group,OCBZ 3,OCBZ 3,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Oxcarbazepine replication 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,OCBZ-3_R1.fq.gz OCBZ-3_R2.fq.gz,fastq fastq,16441074420.0,109623656.0,OCBZ 3 R1.fq.gz,0:149.98 1:149.98,A:4790593528;C:3425919140;G:3421889342;T:4799548697;N:3123713,149,149,,,4790593528,3425919140,3421889342,4799548697,3123713,SRX16766397,SRS14393162,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86035,,0.25644,,0.69747,,0.50144,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-02,Adult,Adult,Brain,Nervous System 70796,SRR20746138,SRX16766396,SRS14393161,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,OCBZ 2,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: OCBZ group,OCBZ 2,OCBZ 2,RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Oxcarbazepine replication 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,OCBZ-2_R1.fq.gz OCBZ-2_R2.fq.gz,fastq fastq,12778450318.0,85203058.0,OCBZ 2 R1.fq.gz,0:149.98 1:149.98,A:3785671797;C:2613766632;G:2603203318;T:3773410803;N:2397768,149,149,,,3785671797,2613766632,2603203318,3773410803,2397768,SRX16766396,SRS14393161,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.85095,,0.27439,,0.72466,,0.51846,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System 70797,SRR20746139,SRX16766395,SRS14393163,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,DMSO 2,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: control group,DMSO 2,DMSO 2,RNAseq of Danio rerio: mixed brain tissue from wile type Danio rerio replication 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,DMSO-2_R1.fq.gz DMSO-2_R2.fq.gz,fastq fastq,16486464640.0,110204032.0,DMSO 2 R1.fq.gz,0:149.60 1:149.60,A:4730793483;C:3497060212;G:3491377818;T:4765662022;N:1571105,149,149,,,4730793483,3497060212,3491377818,4765662022,1571105,SRX16766395,SRS14393163,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86718,,0.24955,,0.70212,,0.50107,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-02,Adult,Adult,Brain,Nervous System 70798,SRR20746140,SRX16766394,SRS14393160,SRP389277,PRJNA859990,Effects of psychotropic drugs on brain tissue of zebrafish,PRJNA859990,Other,,,,,,DMSO 1,,strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Danio rerio: control group,DMSO 1,DMSO 1,RNAseq of Danio rerio: mixed brain tissue from wile type Danio rerio replication 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP389277,,,DMSO-1_R1.fq.gz DMSO-1_R2.fq.gz,fastq fastq,16398292390.0,109640658.0,DMSO 1 R1.fq.gz,0:149.56 1:149.56,A:4724674961;C:3466158531;G:3459736015;T:4746196552;N:1526331,149,149,,,4724674961,3466158531,3459736015,4746196552,1526331,SRX16766394,SRS14393160,SRA1465945,"Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology","Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences",1,0.86523,,0.25273,,0.71474,,0.50305,,150,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-08-01,Adult,Adult,Brain,Nervous System