rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
30066,SRR27676305,SRX23343658,SRS20205511,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,smart seq of setdb1b mt 2,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id:9|BioSampleModel:Model organism or animal,,,,,,,,,smart seq of setdb1b mt 2,smart seq of setdb1b mt 2,smart seq of setdb1b mt 2,smart seq of setdb1b mt of replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,smart-seq of setdb1b mt_2_R2.fastq.gz.gz smart-seq of setdb1b mt_2_R1.fastq.gz.gz,fastq fastq,11957458200.0,39858194.0,smart seq of setdb1b mt 2 R1.fastq.gz.gz,0:150 1:150,A:3692371435;C:1893324720;G:2810967928;T:3560751613;N:42504,150,150,,,3692371435,1893324720,2810967928,3560751613,42504,SRX23343658,SRS20205511,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.76332,0.82639,0.22191,0.23939,0.87093,0.87117,0.59757,0.60008,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30067,SRR27676306,SRX23343657,SRS20205510,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,smart seq of setdb1b mt 1,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id:8|BioSampleModel:Model organism or animal,,,,,,,,,smart seq of setdb1b mt 1,smart seq of setdb1b mt 1,smart seq of setdb1b mt 1,smart seq of setdb1b mt of replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,smart-seq of setdb1b mt_1_R1.fastq.gz.gz smart-seq of setdb1b mt_1_R2.fastq.gz.gz,fastq fastq,9537788700.0,31792629.0,smart seq of setdb1b mt 1 R1.fastq.gz.gz,0:150 1:150,A:3044433376;C:1450924984;G:2142347814;T:2900047705;N:34821,150,150,,,3044433376,1450924984,2142347814,2900047705,34821,SRX23343657,SRS20205510,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.74808,0.79354,0.21148,0.22263,0.87405,0.87545,0.58431,0.58836,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30068,SRR27676307,SRX23343656,SRS20205509,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,smart seq of setdb1b control 2,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id:7|BioSampleModel:Model organism or animal,,,,,,,,,smart seq of setdb1b control 2,smart seq of setdb1b control 2,smart seq of setdb1b control 2,smart seq of setdb1b control of replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,smart-seq of setdb1b control_2_R1.fastq.gz.gz smart-seq of setdb1b control_2_R2.fastq.gz.gz,fastq fastq,7963596600.0,26545322.0,smart seq of setdb1b control 2 R1.fastq.gz.gz,0:150 1:150,A:2522387513;C:1217203824;G:1776725064;T:2447251088;N:29111,150,150,,,2522387513,1217203824,1776725064,2447251088,29111,SRX23343656,SRS20205509,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.77121,0.80578,0.22631,0.23757,0.85953,0.86298,0.58219,0.58387,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30069,SRR27676308,SRX23343655,SRS20205508,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,smart seq of setdb1b control 1,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id:6|BioSampleModel:Model organism or animal,,,,,,,,,smart seq of setdb1b control 1,smart seq of setdb1b control 1,smart seq of setdb1b control 1,smart seq of setdb1b control of replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,smart-seq of setdb1b control_1_R2.fastq.gz.gz smart-seq of setdb1b control_1_R1.fastq.gz.gz,fastq fastq,11867370900.0,39557903.0,smart seq of setdb1b control 1 R1.fastq.gz.gz,0:150 1:150,A:3969636478;C:1678555005;G:2520767064;T:3698368678;N:43675,150,150,,,3969636478,1678555005,2520767064,3698368678,43675,SRX23343655,SRS20205508,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.73517,0.73836,0.23036,0.23129,0.86407,0.86675,0.59652,0.59533,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30070,SRR27676309,SRX23343654,SRS20205505,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,RNA seq of atf7ip mt 2,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id:5|BioSampleModel:Model organism or animal,,,,,,,,,mRNAseq of atf7ip mt,RNA seq of atf7ip mt 2,RNA seq of atf7ip mt 2,mRNAseq of atf7ip mt of replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,RNA-seq of atf7ip mt_2_R2.fastq.gz.gz RNA-seq of atf7ip mt_2_R1.fastq.gz.gz,fastq fastq,2881485000.0,9604950.0,RNA seq of atf7ip mt 2 R1.fastq.gz.gz,0:150 1:150,A:714870764;C:672086586;G:819085358;T:675370688;N:71604,150,150,,,714870764,672086586,819085358,675370688,71604,SRX23343654,SRS20205505,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.95105,0.94782,0.0877,0.08683,0.67838,0.68085,0.4943,0.49308,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30071,SRR27676310,SRX23343653,SRS20205506,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,RNA seq of atf7ip mt 1,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id:4|BioSampleModel:Model organism or animal,,,,,,,,,mRNAseq of atf7ip mt,RNA seq of atf7ip mt 1,RNA seq of atf7ip mt 1,mRNAseq of atf7ip mt of replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,RNA-seq of atf7ip mt_1_R2.fastq.gz.gz RNA-seq of atf7ip mt_1_R1.fastq.gz.gz,fastq fastq,5215476900.0,17384923.0,RNA seq of atf7ip mt 1 R1.fastq.gz.gz,0:150 1:150,A:1305694077;C:1250588317;G:1437727006;T:1221425310;N:42190,150,150,,,1305694077,1250588317,1437727006,1221425310,42190,SRX23343653,SRS20205506,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.95459,0.9546,0.09418,0.0933,0.67353,0.67643,0.49356,0.49989,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30072,SRR27676311,SRX23343652,SRS20205507,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,RNA seq of atf7ip control 3,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 3|id:3|BioSampleModel:Model organism or animal,,,,,,,,,mRNAseq of atf7ip control,RNA seq of atf7ip control 3,RNA seq of atf7ip control 3,mRNAseq of atf7ip control of replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,RNA-seq of atf7ip control_3_R2.fastq.gz.gz RNA-seq of atf7ip control_3_R1.fastq.gz.gz,fastq fastq,6742549200.0,22475164.0,RNA seq of atf7ip control 3 R1.fastq.gz.gz,0:150 1:150,A:1698977237;C:1657996046;G:1800441072;T:1584967439;N:167406,150,150,,,1698977237,1657996046,1800441072,1584967439,167406,SRX23343652,SRS20205507,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.96114,0.9601,0.05191,0.05152,0.69219,0.69398,0.48597,0.48633,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30073,SRR27676312,SRX23343651,SRS20205504,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,RNA seq of atf7ip control 2,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 2|id:2|BioSampleModel:Model organism or animal,,,,,,,,,mRNAseq of atf7ip control,RNA seq of atf7ip control 2,RNA seq of atf7ip control 2,mRNAseq of atf7ip control of replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,RNA-seq of atf7ip control_2_R2.fastq.gz.gz RNA-seq of atf7ip control_2_R1.fastq.gz.gz,fastq fastq,6962540400.0,23208468.0,RNA seq of atf7ip control 2 R1.fastq.gz.gz,0:150 1:150,A:1794934846;C:1640272261;G:1855642638;T:1671491013;N:199642,150,150,,,1794934846,1640272261,1855642638,1671491013,199642,SRX23343651,SRS20205504,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.95531,0.95468,0.05949,0.05926,0.71019,0.71129,0.50401,0.50622,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
30074,SRR27676313,SRX23343650,SRS20205503,SRP485121,PRJNA1067443,RNA seq&smart seq&CUT TAG,PRJNA1067443,Other,RNA seq&smart seq&CUT TAG,,,,,RNA seq of atf7ip control 1,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:72hpf|collection date:missing|geo loc name:missing|sex:pooled male and female|tissue:hematopoietic stem and progenitor cell|replicate:replicate = biological replicate 1|id:1|BioSampleModel:Model organism or animal,,,,,,,,,mRNAseq of atf7ip control,RNA seq of atf7ip control 1,RNA seq of atf7ip control 1,mRNAseq of atf7ip control of replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP485121,,,RNA-seq of atf7ip control_1_R1.fastq.gz.gz RNA-seq of atf7ip control_1_R2.fastq.gz.gz,fastq fastq,8543359800.0,28477866.0,RNA seq of atf7ip control 1 R1.fastq.gz.gz,0:150 1:150,A:2200058170;C:2049588985;G:2219737118;T:2073765388;N:210139,150,150,,,2200058170,2049588985,2219737118,2073765388,210139,SRX23343650,SRS20205503,SRA1789215,East China Normal University|Institute of Biomedical Sciences,East China Normal University,2,0.96026,0.95618,0.05646,0.05613,0.68424,0.6856,0.48963,0.49334,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-01-22,Larval,Larval,Blood,Hematopoietic System
39974,SRR2726604,SRX1354695,SRS1121101,SRP064895,PRJNA298967,Danio rerio Raw sequence reads,PRJNA298967,Whole Genome Sequencing,Alternative polyadenylation in the anti bacterial immune response of zebrafish,,,,,UC.fq.gz,,breed:missing|cultivar:missing|ecotype:missing|isolate:missing|strain:missing|age:6 month|dev stage:adult|sex:male|tissue:spleen|BioSampleModel:Model organism or animal,,,,,,,,,Alternative polyadenylation in the anti bacterial immune response of zebrafish,UC,298967,SAPAS three prime cDNA library,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,550Application ReadForward1,SRP064895,,,UC.fq.gz,fastq,908330752.0,16220192.0,UC,0:56,A:268296300;C:164753303;G:152582935;T:321764605;N:933609,56,,,,268296300,164753303,152582935,321764605,933609,SRX1354695,SRS1121101,SRA305678,"Sun Yat-Sen University|Department of Biochemistry, College of Life Scienc",Sun Yat-Sen University,1,0.76113,,0.14836,,0.86764,,0.49191,,56,,B,,usable mapping rate,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2015-10-19,Adult,Adult,Spleen,Hematopoietic System
39975,SRR2726605,SRX1343023,SRS1117908,SRP064895,PRJNA298967,Danio rerio Raw sequence reads,PRJNA298967,Whole Genome Sequencing,Alternative polyadenylation in the anti bacterial immune response of zebrafish,,,,,BC.fq.gz,,breed:missing|cultivar:missing|ecotype:missing|isolate:missing|strain:missing|age:6 month|dev stage:adult|sex:male|tissue:spleen|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal,,,,,,,,,Alternative polyadenylation in the anti bacterial immune response of zebrafish,298967,298967,SAPAS three prime cDNA library,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,550Application ReadForward1,SRP064895,,,BC.fq.gz,fastq,613456536.0,10954581.0,BC,0:56,A:184952368;C:111595938;G:99647506;T:216155456;N:1105268,56,,,,184952368,111595938,99647506,216155456,1105268,SRX1343023,SRS1117908,SRA305678,"Sun Yat-Sen University|Department of Biochemistry, College of Life Scienc",Sun Yat-Sen University,1,0.74636,,0.11848,,0.84678,,0.47133,,56,,B,,usable mapping rate,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2015-10-24,Adult,Adult,Spleen,Hematopoietic System
63788,SRR14055354,SRX10431257,SRS8565312,SRP311888,PRJNA716463,Mutation of smarca5 in zebrafish leads to venous thrombosis like phenotype,PRJNA716463,Other,Our study using zebrafish smarca5 mutants both characterizes a novel role for smarca5 in blood clot formation and also provides a new venous thrombosis animal model to support drug screening and pre clinical therapeutic assessments of therapies to treat thrombosis.,,,,Model organism or animal sample from Danio rerio,RNA RBC mutant rep3,,strain:gata1:dsRed transgenic line|dev stage:2 dpf|sex:not collected|tissue:Blood|BioSampleModel:Model organism or animal,,,,,,,,,RNA RBC mutant rep3,RNA RBC mutant rep3,RNA RBC mutant rep3,PolyA RNA from 100 200ng total RNA in sorted RBCs from smarca5 siblings and mutants at 2 dpf were used to generate the cDNA libraries respectively,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP311888,,,1049RBC-mu-3_FRAS190320004-1a_1.fq.gz 1049RBC-mu-3_FRAS190320004-1a_2.fq.gz,fastq fastq,13709534700.0,45698449.0,1049RBC mu 3 FRAS190320004 1a 1.fq.gz,0:150 1:150,A:3530756610;C:3372588726;G:3372560453;T:3433404064;N:224847,150,150,,,3530756610,3372588726,3372560453,3433404064,224847,SRX10431257,SRS8565312,SRA1209808,Tsinghua university|School of Life Sciences,Tsinghua university,2,0.92707,0.92658,0.05411,0.05405,0.75607,0.75568,0.45262,0.45118,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-03-24,Hatching,Embryo,Blood,Hematopoietic System
63789,SRR14055355,SRX10431256,SRS8565311,SRP311888,PRJNA716463,Mutation of smarca5 in zebrafish leads to venous thrombosis like phenotype,PRJNA716463,Other,Our study using zebrafish smarca5 mutants both characterizes a novel role for smarca5 in blood clot formation and also provides a new venous thrombosis animal model to support drug screening and pre clinical therapeutic assessments of therapies to treat thrombosis.,,,,Model organism or animal sample from Danio rerio,RNA RBC mutant rep2,,strain:gata1:dsRed transgenic line|dev stage:2 dpf|sex:not collected|tissue:Blood|BioSampleModel:Model organism or animal,,,,,,,,,RNA RBC mutant rep2,RNA RBC mutant rep2,RNA RBC mutant rep2,PolyA RNA from 100 200ng total RNA in sorted RBCs from smarca5 siblings and mutants at 2 dpf were used to generate the cDNA libraries respectively,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP311888,,,1049RBC-mu-2_FRAS190320003-1a_1.fq.gz 1049RBC-mu-2_FRAS190320003-1a_2.fq.gz,fastq fastq,11921348400.0,39737828.0,1049RBC mu 2 FRAS190320003 1a 1.fq.gz,0:150 1:150,A:3056981846;C:2949479942;G:2955534362;T:2959157195;N:195055,150,150,,,3056981846,2949479942,2955534362,2959157195,195055,SRX10431256,SRS8565311,SRA1209808,Tsinghua university|School of Life Sciences,Tsinghua university,2,0.92527,0.92379,0.04988,0.05004,0.76629,0.76723,0.45068,0.44998,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-03-24,Hatching,Embryo,Blood,Hematopoietic System
63790,SRR14055358,SRX10431253,SRS8565308,SRP311888,PRJNA716463,Mutation of smarca5 in zebrafish leads to venous thrombosis like phenotype,PRJNA716463,Other,Our study using zebrafish smarca5 mutants both characterizes a novel role for smarca5 in blood clot formation and also provides a new venous thrombosis animal model to support drug screening and pre clinical therapeutic assessments of therapies to treat thrombosis.,,,,Model organism or animal sample from Danio rerio,RNA RBC mutant rep1,,strain:gata1:dsRed transgenic line|dev stage:2 dpf|sex:not collected|tissue:Blood|BioSampleModel:Model organism or animal,,,,,,,,,RNA RBC mutant rep1,RNA RBC mutant rep1,RNA RBC mutant rep1,PolyA RNA from 100 200ng total RNA in sorted RBCs from smarca5 siblings and mutants at 2 dpf were used to generate the cDNA libraries respectively,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP311888,,,1049RBC-mu-1_FRAS190320002-1a_1.fq.gz 1049RBC-mu-1_FRAS190320002-1a_2.fq.gz,fastq fastq,12136778100.0,40455927.0,1049RBC mu 1 FRAS190320002 1a 1.fq.gz,0:150 1:150,A:3129750481;C:2985406228;G:2964648069;T:3056774126;N:199196,150,150,,,3129750481,2985406228,2964648069,3056774126,199196,SRX10431253,SRS8565308,SRA1209808,Tsinghua university|School of Life Sciences,Tsinghua university,2,0.83132,0.8312,0.04768,0.04763,0.77455,0.77508,0.47219,0.46709,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-03-24,Hatching,Embryo,Blood,Hematopoietic System
63791,SRR14055359,SRX10431252,SRS8565307,SRP311888,PRJNA716463,Mutation of smarca5 in zebrafish leads to venous thrombosis like phenotype,PRJNA716463,Other,Our study using zebrafish smarca5 mutants both characterizes a novel role for smarca5 in blood clot formation and also provides a new venous thrombosis animal model to support drug screening and pre clinical therapeutic assessments of therapies to treat thrombosis.,,,,Model organism or animal sample from Danio rerio,RNA RBC sibling rep3,,strain:gata1:dsRed transgenic line|dev stage:2 dpf|sex:not collected|tissue:Blood|BioSampleModel:Model organism or animal,,,,,,,,,RNA RBC sibling rep3,RNA RBC sibling rep3,RNA RBC sibling rep3,PolyA RNA from 100 200ng total RNA in sorted RBCs from smarca5 siblings and mutants at 2 dpf were used to generate the cDNA libraries respectively,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP311888,,,1049RBC-sib-3_FRAS190320001-1a_1.fq.gz 1049RBC-sib-3_FRAS190320001-1a_2.fq.gz,fastq fastq,13833315900.0,46111053.0,1049RBC sib 3 FRAS190320001 1a 1.fq.gz,0:150 1:150,A:3515133007;C:3462086735;G:3467124241;T:3388720799;N:251118,150,150,,,3515133007,3462086735,3467124241,3388720799,251118,SRX10431252,SRS8565307,SRA1209808,Tsinghua university|School of Life Sciences,Tsinghua university,2,0.93805,0.93649,0.04283,0.04244,0.80752,0.80817,0.44958,0.44864,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-03-24,Hatching,Embryo,Blood,Hematopoietic System
63792,SRR14055360,SRX10431251,SRS8565306,SRP311888,PRJNA716463,Mutation of smarca5 in zebrafish leads to venous thrombosis like phenotype,PRJNA716463,Other,Our study using zebrafish smarca5 mutants both characterizes a novel role for smarca5 in blood clot formation and also provides a new venous thrombosis animal model to support drug screening and pre clinical therapeutic assessments of therapies to treat thrombosis.,,,,Model organism or animal sample from Danio rerio,RNA RBC sibling rep2,,strain:gata1:dsRed transgenic line|dev stage:2 dpf|sex:not collected|tissue:Blood|BioSampleModel:Model organism or animal,,,,,,,,,RNA RBC sibling rep2,RNA RBC sibling rep2,RNA RBC sibling rep2,PolyA RNA from 100 200ng total RNA in sorted RBCs from smarca5 siblings and mutants at 2 dpf were used to generate the cDNA libraries respectively,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP311888,,,1049RBC-sib-2_FRAS190320000-1a_1.fq.gz 1049RBC-sib-2_FRAS190320000-1a_2.fq.gz,fastq fastq,10846357200.0,36154524.0,1049RBC sib 2 FRAS190320000 1a 1.fq.gz,0:150 1:150,A:2755761785;C:2720527184;G:2723864022;T:2645998029;N:206180,150,150,,,2755761785,2720527184,2723864022,2645998029,206180,SRX10431251,SRS8565306,SRA1209808,Tsinghua university|School of Life Sciences,Tsinghua university,2,0.94927,0.94734,0.04134,0.04034,0.80505,0.80586,0.43562,0.43266,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-03-24,Hatching,Embryo,Blood,Hematopoietic System
63793,SRR14055361,SRX10431250,SRS8565305,SRP311888,PRJNA716463,Mutation of smarca5 in zebrafish leads to venous thrombosis like phenotype,PRJNA716463,Other,Our study using zebrafish smarca5 mutants both characterizes a novel role for smarca5 in blood clot formation and also provides a new venous thrombosis animal model to support drug screening and pre clinical therapeutic assessments of therapies to treat thrombosis.,,,,Model organism or animal sample from Danio rerio,RNA RBC sibling rep1,,strain:gata1:dsRed transgenic line|dev stage:2 dpf|sex:not collected|tissue:Blood|BioSampleModel:Model organism or animal,,,,,,,,,RNA RBC sibling rep1,RNA RBC sibling rep1,RNA RBC sibling rep1,PolyA RNA from 100 200ng total RNA in sorted RBCs from smarca5 siblings and mutants at 2 dpf were used to generate the cDNA libraries respectively,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP311888,,,1049RBC-sib-1_FRAS190319999-1a_1.fq.gz 1049RBC-sib-1_FRAS190319999-1a_2.fq.gz,fastq fastq,10945070100.0,36483567.0,1049RBC sib 1 FRAS190319999 1a 1.fq.gz,0:150 1:150,A:2787518303;C:2738688307;G:2737440984;T:2681219061;N:203445,150,150,,,2787518303,2738688307,2737440984,2681219061,203445,SRX10431250,SRS8565305,SRA1209808,Tsinghua university|School of Life Sciences,Tsinghua university,2,0.94824,0.94818,0.04162,0.04125,0.80247,0.80284,0.44015,0.43533,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2021-03-24,Hatching,Embryo,Blood,Hematopoietic System
71666,SRR21912675,SRX17898597,SRS15415408,SRP402754,PRJNA890767,Input of Setdb1 ChIP seq,PRJNA890767,Other,,,,,,Input of Setdb1 ChIP seq 2,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|sex:pooled male and female|tissue:hematopoietic stem cell|id:2|BioSampleModel:Model organism or animal,,,,,,,,,Input of Setdb1 ChIP seq,Input of Setdb1 ChIP seq 2,Input of Setdb1 ChIP seq 2,Input of Setdb1 ChIP seq of replicate 2,,,ChIP-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP402754,,,Input of Setdb1 ChIP seq_2_R1.fastq.gz Input of Setdb1 ChIP seq_2_R2.fastq.gz,fastq fastq,10384123200.0,34613744.0,Input of Setdb1 ChIP seq 2 R1.fastq.gz,0:150 1:150,A:2881450025;C:2101684440;G:2781250994;T:2619703377;N:34364,150,150,,,2881450025,2101684440,2781250994,2619703377,34364,SRX17898597,SRS15415408,SRA1520925,East China Normal University|School of Life Sciences,East China Normal University,2,0.85089,0.8531,0.74147,0.74359,0.72295,0.72243,0.49118,0.48923,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-10-15,Larval,Larval,Blood,Hematopoietic System
71667,SRR21912676,SRX17898596,SRS15415407,SRP402754,PRJNA890767,Input of Setdb1 ChIP seq,PRJNA890767,Other,,,,,,Input of Setdb1 ChIP seq 1,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|sex:pooled male and female|tissue:hematopoietic stem cell|id:1|BioSampleModel:Model organism or animal,,,,,,,,,Input of Setdb1 ChIP seq,Input of Setdb1 ChIP seq 1,Input of Setdb1 ChIP seq 1,Input of Setdb1 ChIP seq of replicate 1,,,ChIP-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP402754,,,Input of Setdb1 ChIP seq_1_R1.fastq.gz Input of Setdb1 ChIP seq_1_R2.fastq.gz,fastq fastq,12920086500.0,43066955.0,Input of Setdb1 ChIP seq 1 R1.fastq.gz,0:150 1:150,A:3743886319;C:2621020407;G:3091990806;T:3463122519;N:66449,150,150,,,3743886319,2621020407,3091990806,3463122519,66449,SRX17898596,SRS15415407,SRA1520925,East China Normal University|School of Life Sciences,East China Normal University,2,0.84709,0.84605,0.73727,0.73696,0.71622,0.71825,0.49278,0.49029,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-10-15,Larval,Larval,Blood,Hematopoietic System
71668,SRR21913250,SRX17899172,SRS15415910,SRP402767,PRJNA890871,Setdb1 ChIP seq,PRJNA890871,Other,,,,,,Setdb1 ChIP seq 2,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|sex:pooled male and female|tissue:hematopoietic stem cell|id:2|BioSampleModel:Model organism or animal,,,,,,,,,Setdb1 ChIP seq,Setdb1 ChIP seq 2,Setdb1 ChIP seq 2,Setdb1 ChIP seq of replicate 2,,,ChIP-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP402767,,,Setdb1 ChIP seq_2_R1.fastq.gz Setdb1 ChIP seq_2_R2.fastq.gz,fastq fastq,12909692700.0,43032309.0,Setdb1 ChIP seq 2 R1.fastq.gz,0:150 1:150,A:3496408461;C:2593261434;G:3585073580;T:3234906241;N:42984,150,150,,,3496408461,2593261434,3585073580,3234906241,42984,SRX17899172,SRS15415910,SRA1520950,East China Normal University|School of Life Sciences,East China Normal University,2,0.80561,0.80471,0.69212,0.69176,0.71924,0.71999,0.49445,0.4953,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-10-15,Larval,Larval,Blood,Hematopoietic System
71669,SRR21913251,SRX17899171,SRS15415909,SRP402767,PRJNA890871,Setdb1 ChIP seq,PRJNA890871,Other,,,,,,Setdb1 ChIP seq 1,,strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|sex:pooled male and female|tissue:hematopoietic stem cell|id:1|BioSampleModel:Model organism or animal,,,,,,,,,Setdb1 ChIP seq,Setdb1 ChIP seq 1,Setdb1 ChIP seq 1,Setdb1 ChIP seq of replicate 1,,,ChIP-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP402767,,,Setdb1 ChIP seq_1_R1.fastq.gz Setdb1 ChIP seq_1_R2.fastq.gz,fastq fastq,9908302200.0,33027674.0,Setdb1 ChIP seq 1 R1.fastq.gz,0:150 1:150,A:2799788817;C:2060083633;G:2416457009;T:2631940230;N:32511,150,150,,,2799788817,2060083633,2416457009,2631940230,32511,SRX17899171,SRS15415909,SRA1520950,East China Normal University|School of Life Sciences,East China Normal University,2,0.7718,0.77187,0.66177,0.66128,0.72088,0.71963,0.49562,0.49458,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-10-15,Larval,Larval,Blood,Hematopoietic System