rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
28513,SRR31643557,SRX27006657,SRS23471106,SRP467901,PRJNA1026724,vertebrate lungs,PRJNA1026724,Other,We provide comprehensive datasets including RNA Seq and single cell RNA sequencing scRAN seq of multiple tissues for white spotted bamboo shark  scRNA seq of multiple tissues of the African lungfish and Senegal bichir  genome of the bearded dragon  scRAN seq of African bullfrog lung and central bearded dragon lung and H3k27ac and H3k4me1 CUT&Tag sequencing data of chicken embryonic lungs from stage E9 to study the origin and evelution of vertebrate lungs.,,pubmed:39953253,,,zebrafish,,strain:Cyprinidae|age:adult|collection date:2021 09|geo loc name:China: Wuhan city  Wuhan Province|sex:not collected|tissue:swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of zebrafish :swim blader,zebrafish swimbladder,zebrafish swimbladder,sequencing for single cell gene expression,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP467901,,,Dr_Sb-3_S1_L003_R2_001.fastq.gz Dr_Sb-3_S1_L003_R1_001.fastq.gz Dr_Sb-2_S1_L001_R2_001.fastq.gz Dr_Sb-2_S1_L001_R1_001.fastq.gz Dr_Sb-1_S1_L001_R2_001.fastq.gz Dr_Sb-1_S1_L001_R1_001.fastq.gz,fastq fastq fastq fastq fastq fastq,,,Dr Sb 1 S1 L001 R1 001.fastq.gz,,,,,,,,,,,,SRX27006657,,SRA2029673,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,,,,,,,,,,,,,,,illumina,novaseq_era,unknown,random_priming,unknown,sc,single_cell_generic,generic-scrnaseq-only,,China,2024-12-08,Adult,Adult,Swim Bladder,Swim Bladder
33615,SRR30272850,SRX25733949,SRS22373737,SRP526812,PRJNA1148907,Single cell RNA sequencing to uncover tissue specific transcriptomic changes induced by perfluorooctanesulfonic acid PFOS in larval zebrafish Danio rerio,PRJNA1148907,Other,The aim is to to apply single cell RNA sequencing of zebrafish larvae to identify novel tissue specific mechanisms and processes following embryonic exposure to perfluorooctanesulfonic acid PFOS,,pubmed:39947082,,PFOS  S2,Sample2,,strain:Tgins:GFP zebrafish on an AB wildtype background|age:72 hpf|dev stage:protruding mouth stage|collection date:2023 01 03|geo loc name:USA: Massachusetts|sex:NA|tissue:whole body cells|treatment:PFOS 16 uM|BioSampleModel:Model organism or animal,,,,,,,,,PFOS,PFOS,PFOS,PFOS  S2  scRNAseq,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP526812,,,G194-S2-PFOS_S2_L001_R1_001.fastq.gz G194-S2-PFOS_S2_L001_R2_001.fastq.gz G194-S2-PFOS_S2_L002_R1_001.fastq.gz G194-S2-PFOS_S2_L002_R2_001.fastq.gz G194-S2-PFOS_S2_L003_R1_001.fastq.gz G194-S2-PFOS_S2_L003_R2_001.fastq.gz G194-S2-PFOS_S2_L004_R1_001.fastq.gz G194-S2-PFOS_S2_L004_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,21751958340.0,184338630.0,G194 S2 PFOS S2 L001 R1 001.fastq.gz,0:28 1:90,A:6239773453;C:4634671870;G:5196638658;T:5672561386;N:8312973,28,90,,,6239773453,4634671870,5196638658,5672561386,8312973,SRX25733949,SRS22373737,SRA1949185,University of Massachusetts Amherst|Environmental Health Sciences,University of Massachusetts Amherst,2,0.01021,0.92344,0.00451,0.22962,0.99328,0.79847,0.28896,0.51751,28,90,T,B,sc-like readlen,illumina,nextseq,unknown,random_priming,unknown,sc,single_cell_generic,generic-scrnaseq-only,,United States,2024-08-16,Larval,Larval,Trunk,Surface Structure
33616,SRR30272851,SRX25733948,SRS22373736,SRP526812,PRJNA1148907,Single cell RNA sequencing to uncover tissue specific transcriptomic changes induced by perfluorooctanesulfonic acid PFOS in larval zebrafish Danio rerio,PRJNA1148907,Other,The aim is to to apply single cell RNA sequencing of zebrafish larvae to identify novel tissue specific mechanisms and processes following embryonic exposure to perfluorooctanesulfonic acid PFOS,,pubmed:39947082,,DMSO  S1,Sample1,,strain:Tgins:GFP zebrafish on an AB wildtype background|age:72 hpf|dev stage:protruding mouth stage|collection date:2023 01 03|geo loc name:USA: Massachusetts|sex:NA|tissue:whole body cells|treatment:DMSO 0.01%|BioSampleModel:Model organism or animal,,,,,,,,,DMSO,DMSO,DMSO,DMSO  S1  scRNAseq,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP526812,,,G194-S1-DMSO_S1_L001_R1_001.fastq.gz G194-S1-DMSO_S1_L001_R2_001.fastq.gz G194-S1-DMSO_S1_L002_R1_001.fastq.gz G194-S1-DMSO_S1_L002_R2_001.fastq.gz G194-S1-DMSO_S1_L003_R1_001.fastq.gz G194-S1-DMSO_S1_L003_R2_001.fastq.gz G194-S1-DMSO_S1_L004_R1_001.fastq.gz G194-S1-DMSO_S1_L004_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,21636838838.0,183363041.0,G194 S1 DMSO S1 L001 R1 001.fastq.gz,0:28 1:90,A:6175214014;C:4647929260;G:5248646646;T:5556827078;N:8221840,28,90,,,6175214014,4647929260,5248646646,5556827078,8221840,SRX25733948,SRS22373736,SRA1949185,University of Massachusetts Amherst|Environmental Health Sciences,University of Massachusetts Amherst,2,0.01048,0.92488,0.00455,0.20966,0.99358,0.81464,0.28056,0.57876,28,90,T,B,sc-like readlen,illumina,nextseq,unknown,random_priming,unknown,sc,single_cell_generic,generic-scrnaseq-only,,United States,2024-08-16,Larval,Larval,Trunk,Surface Structure