rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
33609,SRR30247666,SRX25709110,SRS22350227,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3,KO3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3,hey25nt /  replicate 3,hey25nt /  replicate 3,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_3_1.fq.gz KO_3_2.fq.gz,fastq fastq,6793426200.0,22644754.0,KO 3 1.fq.gz,0:150 1:150,A:1845779030;C:1550159613;G:1539592354;T:1857860950;N:34253,150,150,,,1845779030,1550159613,1539592354,1857860950,34253,SRX25709110,SRS22350227,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94555,0.92523,0.0631,0.06139,0.76672,0.76968,0.56501,0.57019,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33610,SRR30247667,SRX25709109,SRS22350226,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutantzebrafish hearts at 3 mpf  rep2,KO2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep2,hey25nt /  replicate 2,hey25nt /  replicate 2,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_2_1.fq.gz KO_2_2.fq.gz,fastq fastq,6577703400.0,21925678.0,KO 2 1.fq.gz,0:150 1:150,A:1795319867;C:1492750718;G:1485718638;T:1803881133;N:33044,150,150,,,1795319867,1492750718,1485718638,1803881133,33044,SRX25709109,SRS22350226,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94565,0.92404,0.06212,0.06008,0.77281,0.77546,0.55478,0.56589,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33611,SRR30247668,SRX25709108,SRS22350225,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1,KO1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1,hey25nt /  replicate 1,hey25nt /  replicate 1,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_1_2.fq.gz KO_1_1.fq.gz,fastq fastq,6592159500.0,21973865.0,KO 1 1.fq.gz,0:150 1:150,A:1800707634;C:1491918482;G:1484850929;T:1814648405;N:34050,150,150,,,1800707634,1491918482,1484850929,1814648405,34050,SRX25709108,SRS22350225,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94443,0.92689,0.06601,0.06488,0.76883,0.77033,0.58332,0.52175,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33612,SRR30247669,SRX25709107,SRS22350224,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3,WT3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3,hey2+/+ replicate 3,hey2+/+ replicate 3,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_3_1.fq.gz WT_3_2.fq.gz,fastq fastq,6582842700.0,21942809.0,WT 3 1.fq.gz,0:150 1:150,A:1796301568;C:1494922823;G:1487154319;T:1804427831;N:36159,150,150,,,1796301568,1494922823,1487154319,1804427831,36159,SRX25709107,SRS22350224,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94446,0.92023,0.06492,0.06289,0.76694,0.7699,0.55651,0.53407,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33613,SRR30247670,SRX25709106,SRS22350223,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2,WT2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2,hey2+/+ replicate 2,hey2+/+ replicate 2,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_2_2.fq.gz WT_2_1.fq.gz,fastq fastq,6632526000.0,22108420.0,WT 2 1.fq.gz,0:150 1:150,A:1811392253;C:1505075703;G:1495091968;T:1820928778;N:37298,150,150,,,1811392253,1505075703,1495091968,1820928778,37298,SRX25709106,SRS22350223,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94532,0.92096,0.06496,0.06227,0.76564,0.76909,0.56754,0.57117,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33614,SRR30247671,SRX25709105,SRS22350222,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1,WT1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1,hey2+/+ replicate 1,hey2+/+ replicate 1,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_1_1.fq.gz WT_1_2.fq.gz,fastq fastq,6601461900.0,22004873.0,WT 1 1.fq.gz,0:150 1:150,A:1816453592;C:1485325900;G:1476423985;T:1823223402;N:35021,150,150,,,1816453592,1485325900,1476423985,1823223402,35021,SRX25709105,SRS22350222,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.9482,0.92609,0.05744,0.0553,0.77423,0.77699,0.53884,0.54075,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
48054,SRR7008006,SRX3940581,SRS3171382,SRP140462,PRJNA450341,Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling,PRJNA450341,Other,Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages  as well as maintaining the self renewal ability throughout life. The hairy like organelle  cilia  are present in most types of vertebrate cells  and play important roles in various biological processes. However  it is unclear whether and how cilia regulate HSPC development in vertebrates. Here  we show that cilia specific genes  involved in primary cilia formation and signaling transduction  are required for HSPC development  especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically  we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether  our findings reveal a pivotal role of endothelial primary cilia in HSPC development  and may shed lights into in vitro directed differentiation of HSPCs.,,,MO26h rep1,MO26h 1,Sample3,,strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:fsd1morphants 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of fsd1 morphants1,MO26h 1,MO26h 1,RNA was  isolated from trunk regions of control embryos and fsd1 morphants  for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP140462,,,MO26h_1_1.fq.gz,fastq,1193983450.0,23879669.0,MO26h 1 1.fq.gz,0:50,A:313344068;C:282899939;G:291404437;T:306051122;N:283884,50,,,,313344068,282899939,291404437,306051122,283884,SRX3940581,SRS3171382,SRA690964,"Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology","Institute of Zoology, CHINESE ACADEMY OF SCIENCES",1,0.95658,,0.07921,,0.70307,,0.47586,,50,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-04-16,Pharyngula,Embryo,Trunk,Surface Structure
48055,SRR7008007,SRX3940580,SRS3171381,SRP140462,PRJNA450341,Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling,PRJNA450341,Other,Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages  as well as maintaining the self renewal ability throughout life. The hairy like organelle  cilia  are present in most types of vertebrate cells  and play important roles in various biological processes. However  it is unclear whether and how cilia regulate HSPC development in vertebrates. Here  we show that cilia specific genes  involved in primary cilia formation and signaling transduction  are required for HSPC development  especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically  we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether  our findings reveal a pivotal role of endothelial primary cilia in HSPC development  and may shed lights into in vitro directed differentiation of HSPCs.,,,MO26h rep2,MO26h 2,Sample4,,strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:fsd1morphants 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of fsd1 morphants2,MO26h 2,MO26h 2,RNA was  isolated from trunk regions of control embryos and fsd1 morphants  for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP140462,,,MO26h_2_1.fq.gz,fastq,1199524600.0,23990492.0,MO26h 2 1.fq.gz,0:50,A:318726410;C:282721669;G:287606979;T:310182197;N:287345,50,,,,318726410,282721669,287606979,310182197,287345,SRX3940580,SRS3171381,SRA690964,"Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology","Institute of Zoology, CHINESE ACADEMY OF SCIENCES",1,0.9541,,0.08695,,0.70404,,0.47195,,50,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-04-16,Pharyngula,Embryo,Trunk,Surface Structure
48056,SRR7008008,SRX3940579,SRS3171379,SRP140462,PRJNA450341,Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling,PRJNA450341,Other,Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages  as well as maintaining the self renewal ability throughout life. The hairy like organelle  cilia  are present in most types of vertebrate cells  and play important roles in various biological processes. However  it is unclear whether and how cilia regulate HSPC development in vertebrates. Here  we show that cilia specific genes  involved in primary cilia formation and signaling transduction  are required for HSPC development  especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically  we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether  our findings reveal a pivotal role of endothelial primary cilia in HSPC development  and may shed lights into in vitro directed differentiation of HSPCs.,,,WT26h rep1,WT26h 1,Sample1,,strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:normal embryos 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of normal embryos1,WT26h 1,WT26h 1,RNA was  isolated from trunk regions of control embryos and fsd1 morphants  for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP140462,,,WT26h_1_1.fq.gz,fastq,1200268650.0,24005373.0,WT26h 1 1.fq.gz,0:50,A:315743815;C:284447849;G:295772915;T:303964473;N:339598,50,,,,315743815,284447849,295772915,303964473,339598,SRX3940579,SRS3171379,SRA690964,"Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology","Institute of Zoology, CHINESE ACADEMY OF SCIENCES",1,0.95659,,0.07726,,0.70425,,0.47269,,50,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-04-16,Pharyngula,Embryo,Trunk,Surface Structure
48057,SRR7008009,SRX3940578,SRS3171380,SRP140462,PRJNA450341,Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling,PRJNA450341,Other,Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages  as well as maintaining the self renewal ability throughout life. The hairy like organelle  cilia  are present in most types of vertebrate cells  and play important roles in various biological processes. However  it is unclear whether and how cilia regulate HSPC development in vertebrates. Here  we show that cilia specific genes  involved in primary cilia formation and signaling transduction  are required for HSPC development  especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically  we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether  our findings reveal a pivotal role of endothelial primary cilia in HSPC development  and may shed lights into in vitro directed differentiation of HSPCs.,,,WT26h rep2,WT26h 2,Sample2,,strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:normal embryos 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of normal embryos2,WT26h 2,WT26h 2,RNA was  isolated from trunk regions of control embryos and fsd1 morphants  for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP140462,,,WT26h_2_1.fq.gz,fastq,1199179850.0,23983597.0,WT26h 2 1.fq.gz,0:50,A:316605984;C:281184572;G:292581373;T:308419476;N:388445,50,,,,316605984,281184572,292581373,308419476,388445,SRX3940578,SRS3171380,SRA690964,"Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology","Institute of Zoology, CHINESE ACADEMY OF SCIENCES",1,0.95377,,0.08617,,0.70508,,0.4775,,50,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-04-16,Pharyngula,Embryo,Trunk,Surface Structure
68195,SRR17658724,SRX13826757,SRS11705915,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,C25d  ZHT,,strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:25dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,C25D,C25D,WT zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20541691800.0,68472306.0,C25D.7z,0:150 1:150,A:5668751376;C:4596699177;G:4545478495;T:5730382931;N:379821,150,150,,,5668751376,4596699177,4545478495,5730382931,379821,SRX13826757,SRS11705915,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.84223,0.84372,0.07155,0.07222,0.70189,0.70321,0.47909,0.495,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-07,Larval,Larval,Whole Organism,All anatomical structures
68196,SRR17658725,SRX13826756,SRS11705914,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,T60d  ZHT,,strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,T60D,T60D,heat treated zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20334742200.0,67782474.0,T60D.7z,0:150 1:150,A:5482201207;C:4682998764;G:4635775004;T:5533378494;N:388731,150,150,,,5482201207,4682998764,4635775004,5533378494,388731,SRX13826756,SRS11705914,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.94378,0.94515,0.04989,0.04997,0.69848,0.69978,0.50317,0.5041,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-09,Juvenile,Juvenile,Whole Organism,All anatomical structures
68197,SRR17658726,SRX13826755,SRS11705913,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,T45d  ZHT,,strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:45dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,T45D,T45D,heat treated zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20230560300.0,67435201.0,T45D.7z,0:150 1:150,A:5444816209;C:4663007584;G:4631943733;T:5490408754;N:384020,150,150,,,5444816209,4663007584,4631943733,5490408754,384020,SRX13826755,SRS11705913,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.88041,0.881,0.04485,0.04492,0.72163,0.72236,0.52232,0.52307,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-09,Juvenile,Juvenile,Whole Organism,All anatomical structures
68198,SRR17658727,SRX13826754,SRS11705912,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,T35d  ZHT,,strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:35dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,T35D,T35D,heat treated zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20630503200.0,68768344.0,T35D.7z,0:150 1:150,A:5660657832;C:4654929757;G:4598083304;T:5716350276;N:482031,150,150,,,5660657832,4654929757,4598083304,5716350276,482031,SRX13826754,SRS11705912,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.9134,0.91476,0.06961,0.06972,0.69035,0.69215,0.52155,0.5154,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-09,Juvenile,Juvenile,Whole Organism,All anatomical structures
68199,SRR17658728,SRX13826753,SRS11705911,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,C60d  ZHT,,strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,C60D,C60D,WT zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,10921407600.0,44923977.0,C60D.7z,,A:2992232295;C:2470688717;G:2440861228;T:3017432565;N:192795,,,,,2992232295,2470688717,2440861228,3017432565,192795,SRX13826753,SRS11705911,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.93932,0.94095,0.06489,0.06559,0.77871,0.77759,0.56384,0.56447,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-09,Juvenile,Juvenile,Whole Organism,All anatomical structures
68200,SRR17658729,SRX13826752,SRS11705910,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,C45d  ZHT,,strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:45dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,C45D,C45D,WT zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20413229700.0,68044099.0,C45D.7z,0:150 1:150,A:5619395833;C:4581611789;G:4543973618;T:5667873613;N:374847,150,150,,,5619395833,4581611789,4543973618,5667873613,374847,SRX13826752,SRS11705910,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.86848,0.87064,0.0719,0.07252,0.69879,0.69834,0.52279,0.51074,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-09,Juvenile,Juvenile,Whole Organism,All anatomical structures
68201,SRR17658730,SRX13826751,SRS11705909,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,C35d  ZHT,,strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:35dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,C35D,C35D,WT zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20469803700.0,68232679.0,C35D.7z,0:150 1:150,A:5556774511;C:4678377106;G:4627472920;T:5606765895;N:413268,150,150,,,5556774511,4678377106,4627472920,5606765895,413268,SRX13826751,SRS11705909,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.93663,0.93871,0.06853,0.06895,0.6982,0.69901,0.51209,0.51148,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-09,Juvenile,Juvenile,Whole Organism,All anatomical structures
70178,SRR19568478,SRX15620532,SRS13321067,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,TCDD 4,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:8|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment,TCDD 4,TCDD 4,RNA seq of zebrafish Danio rerio: replicate 4 of TCDD treatment,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,TCDD_4_1.fq.gz TCDD_4_2.fq.gz,fastq fastq,6664935600.0,44432904.0,TCDD 4 1.fq.gz,0:150 1:150,A:1778771695;C:1547959320;G:1547444025;T:1790760560;N:0,150,150,,,1778771695,1547959320,1547444025,1790760560,0,SRX15620532,SRS13321067,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.93639,,0.07898,,0.67649,,0.51984,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
70179,SRR19568479,SRX15620531,SRS13321066,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,TCDD 3,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:7|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment,TCDD 3,TCDD 3,RNA seq of zebrafish Danio rerio: replicate 3 of TCDD treatment,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,TCDD_3_1.fq.gz TCDD_3_2.fq.gz,fastq fastq,6763596300.0,45090642.0,TCDD 3 1.fq.gz,0:150 1:150,A:1802620229;C:1572061293;G:1575663838;T:1813250940;N:0,150,150,,,1802620229,1572061293,1575663838,1813250940,0,SRX15620531,SRS13321066,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.93871,,0.07491,,0.67754,,0.51592,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
70180,SRR19568480,SRX15620530,SRS13321065,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,TCDD 2,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment,TCDD 2,TCDD 2,RNA seq of zebrafish Danio rerio: replicate 2 of TCDD treatment,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,TCDD_2_1.fq.gz TCDD_2_2.fq.gz,fastq fastq,6628062600.0,44187084.0,TCDD 2 1.fq.gz,0:150 1:150,A:1772545581;C:1536779192;G:1535280305;T:1783457522;N:0,150,150,,,1772545581,1536779192,1535280305,1783457522,0,SRX15620530,SRS13321065,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.93556,,0.07257,,0.68067,,0.51787,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
70181,SRR19568481,SRX15620529,SRS13321064,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,TCDD 1,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment,TCDD 1,TCDD 1,RNA seq of zebrafish Danio rerio: replicate 1 of TCDD treatment,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,TCDD_1_1.fq.gz TCDD_1_2.fq.gz,fastq fastq,6661439100.0,44409594.0,TCDD 1 1.fq.gz,0:150 1:150,A:1776797062;C:1548148693;G:1547340992;T:1789152353;N:0,150,150,,,1776797062,1548148693,1547340992,1789152353,0,SRX15620529,SRS13321064,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.93716,,0.07287,,0.67487,,0.50549,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
70182,SRR19568482,SRX15620528,SRS13321062,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,Ctrl 4,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of control,Ctrl 4,Ctrl 4,RNA seq of zebrafish Danio rerio: replicate 4 of control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,Ctrl_4_1.fq.gz Ctrl_4_2.fq.gz,fastq fastq,6737187300.0,44914582.0,Ctrl 4 1.fq.gz,0:150 1:150,A:1792212366;C:1570555803;G:1570692729;T:1803726402;N:0,150,150,,,1792212366,1570555803,1570692729,1803726402,0,SRX15620528,SRS13321062,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.94104,,0.07451,,0.67821,,0.51308,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
70183,SRR19568483,SRX15620527,SRS13321063,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,Ctrl 3,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of control,Ctrl 3,Ctrl 3,RNA seq of zebrafish Danio rerio: replicate 3 of control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,Ctrl_3_1.fq.gz Ctrl_3_2.fq.gz,fastq fastq,6731291400.0,44875276.0,Ctrl 3 1.fq.gz,0:150 1:150,A:1790044747;C:1568544653;G:1569058962;T:1803643038;N:0,150,150,,,1790044747,1568544653,1569058962,1803643038,0,SRX15620527,SRS13321063,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.94057,,0.06779,,0.68162,,0.51945,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
70184,SRR19568484,SRX15620526,SRS13321060,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,Ctrl 2,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of control,Ctrl 2,Ctrl 2,RNA seq of zebrafish Danio rerio: replicate 2 of control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,Ctrl_2_1.fq.gz Ctrl_2_2.fq.gz,fastq fastq,6698026800.0,44653512.0,Ctrl 2 1.fq.gz,0:150 1:150,A:1795059523;C:1549817920;G:1547008645;T:1806140712;N:0,150,150,,,1795059523,1549817920,1547008645,1806140712,0,SRX15620526,SRS13321060,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.93483,,0.07839,,0.67491,,0.52108,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
70185,SRR19568485,SRX15620525,SRS13321061,SRP378839,PRJNA846550,The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish,PRJNA846550,Other,Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.,,,,,Ctrl 1,,strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio: larval heart of control,Ctrl 1,Ctrl 1,RNA seq of zebrafish Danio rerio: replicate 1 of control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP378839,,,Ctrl_1_1.fq.gz Ctrl_1_2.fq.gz,fastq fastq,6735053100.0,44900354.0,Ctrl 1 1.fq.gz,0:150 1:150,A:1769863183;C:1592773959;G:1591379310;T:1781036648;N:0,150,150,,,1769863183,1592773959,1591379310,1781036648,0,SRX15620525,SRS13321061,SRA1432977,Shandong University|School of basic medical sciences,Shandong University,1,0.94397,,0.05544,,0.69749,,0.51432,,150,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-06-07,Larval,Larval,Heart,Cardiovascular System
74701,SRR24003726,SRX19807142,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,case2 4,case2 4,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,case2_4_1.fq.gz case2_4_2.fq.gz,fastq fastq,6631325400.0,22104418.0,case2 4 1.fq.gz,0:150 1:150,A:1790451511;C:1523987494;G:1517049214;T:1799837181;N:0,150,150,,,1790451511,1523987494,1517049214,1799837181,0,SRX19807142,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.94202,0.94054,0.06448,0.06393,0.71415,0.71445,0.52801,0.52947,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74702,SRR24003727,SRX19807141,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,case2 3,case2 3,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,case2_3_1.fq.gz case2_3_2.fq.gz,fastq fastq,6706743300.0,22355811.0,case2 3 1.fq.gz,0:150 1:150,A:1845685627;C:1507725453;G:1499541624;T:1853790596;N:0,150,150,,,1845685627,1507725453,1499541624,1853790596,0,SRX19807141,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.94268,0.93594,0.08009,0.07937,0.70402,0.70441,0.4556,0.48818,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74703,SRR24003728,SRX19807140,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,case2 2,case2 2,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,case2_2_1.fq.gz case2_2_2.fq.gz,fastq fastq,6677092200.0,22256974.0,case2 2 1.fq.gz,0:150 1:150,A:1864795230;C:1474224567;G:1465199644;T:1872872759;N:0,150,150,,,1864795230,1474224567,1465199644,1872872759,0,SRX19807140,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.93359,0.92743,0.0959,0.09583,0.69089,0.69234,0.48419,0.48121,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74704,SRR24003729,SRX19807139,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,case2 1,case2 1,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,case2_1_1.fq.gz case2_1_2.fq.gz,fastq fastq,6644478600.0,22148262.0,case2 1 1.fq.gz,0:150 1:150,A:1863814645;C:1460246773;G:1453279946;T:1867137236;N:0,150,150,,,1863814645,1460246773,1453279946,1867137236,0,SRX19807139,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.93932,0.9379,0.09722,0.09709,0.71985,0.71873,0.49646,0.5522,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74705,SRR24003730,SRX19807138,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,control2 6,control2 6,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,control2_6_1.fq.gz control2_6_2.fq.gz,fastq fastq,6817849200.0,22726164.0,control2 6 1.fq.gz,0:150 1:150,A:1916198776;C:1480570561;G:1501234091;T:1919845772;N:0,150,150,,,1916198776,1480570561,1501234091,1919845772,0,SRX19807138,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.94697,0.9369,0.06934,0.06812,0.76824,0.77114,0.49005,0.54882,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74706,SRR24003731,SRX19807137,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,control2 5,control2 5,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,control2_5_1.fq.gz control2_5_2.fq.gz,fastq fastq,6730171500.0,22433905.0,control2 5 1.fq.gz,0:150 1:150,A:1881763818;C:1469481635;G:1493477302;T:1885448745;N:0,150,150,,,1881763818,1469481635,1493477302,1885448745,0,SRX19807137,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.9399,0.92905,0.0832,0.08122,0.70993,0.71228,0.54991,0.58952,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74707,SRR24003732,SRX19807136,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,control2 4,control2 4,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,control2_4_1.fq.gz control2_4_2.fq.gz,fastq fastq,6660686100.0,22202287.0,control2 4 1.fq.gz,0:150 1:150,A:1846205332;C:1486328129;G:1477889862;T:1850262777;N:0,150,150,,,1846205332,1486328129,1477889862,1850262777,0,SRX19807136,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.94251,0.94001,0.08206,0.082,0.69483,0.69524,0.49193,0.49602,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74708,SRR24003733,SRX19807135,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,control2 3,control2 3,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,control2_3_1.fq.gz control2_3_2.fq.gz,fastq fastq,6683569500.0,22278565.0,control2 3 1.fq.gz,0:150 1:150,A:1846755716;C:1494194697;G:1482717957;T:1859901130;N:0,150,150,,,1846755716,1494194697,1482717957,1859901130,0,SRX19807135,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.93255,0.93106,0.10717,0.10731,0.67665,0.67791,0.54876,0.52297,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74709,SRR24003734,SRX19807134,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,case2 7,case2 7,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,case2_7_1.fq.gz case2_7_2.fq.gz,fastq fastq,6770748000.0,22569160.0,case2 7 1.fq.gz,0:150 1:150,A:1918448687;C:1455131518;G:1474277741;T:1922890054;N:0,150,150,,,1918448687,1455131518,1474277741,1922890054,0,SRX19807134,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.94025,0.92953,0.08709,0.0851,0.73864,0.73914,0.5716,0.56037,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74710,SRR24003735,SRX19807133,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,case2 6,case2 6,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,case2_6_1.fq.gz case2_6_2.fq.gz,fastq fastq,6743372700.0,22477909.0,case2 6 1.fq.gz,0:150 1:150,A:1825699499;C:1533637372;G:1552424547;T:1831611282;N:0,150,150,,,1825699499,1533637372,1552424547,1831611282,0,SRX19807133,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.95425,0.94313,0.05313,0.05246,0.77268,0.77461,0.52616,0.5227,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74711,SRR24003736,SRX19807132,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,case2 5,case2 5,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,case2_5_1.fq.gz case2_5_2.fq.gz,fastq fastq,6810815400.0,22702718.0,case2 5 1.fq.gz,0:150 1:150,A:1861549181;C:1529649127;G:1553365612;T:1866251480;N:0,150,150,,,1861549181,1529649127,1553365612,1866251480,0,SRX19807132,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.94842,0.93757,0.06448,0.06317,0.74036,0.74097,0.53479,0.52393,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74712,SRR24003737,SRX19807131,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,control2 2,control2 2,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,control2_2_1.fq.gz control2_2_2.fq.gz,fastq fastq,6693643800.0,22312146.0,control2 2 1.fq.gz,0:150 1:150,A:1846873501;C:1499207913;G:1490122627;T:1857439759;N:0,150,150,,,1846873501,1499207913,1490122627,1857439759,0,SRX19807131,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.93282,0.93092,0.09007,0.0899,0.68672,0.68793,0.55221,0.55318,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
74713,SRR24003738,SRX19807130,SRS17168877,SRP429947,PRJNA949785,Sequencing of zebrafish bone tissues,PRJNA949785,Other,Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass,,,,,eight month zebrafish bone tissues,,breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of b1 tissue in zebrafish,control2 1,control2 1,Qualified total RNA was purified by DNase I  and mRNA was enriched by adding OligodT  attached magnetic beads. Subsequently  fragment buffer was added to cleave the mRNA into small   fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first  cDNA strand  and then the second cDNA strand was generated. End repair and adaptor ligation were  performed by adding A tailing Mix and RNA Index Adapters  and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products.  The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality  of the final library was tested. The qualified library was replicated by rolling circle replication to form  DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently  sequencing was performed on the BGIISEQ500 platform  BGI Shenzhen  Guangdong  China using combined probe anchored polymerisation.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP429947,,,control2_1_1.fq.gz control2_1_2.fq.gz,fastq fastq,6629354100.0,22097847.0,control2 1 1.fq.gz,0:150 1:150,A:1819412655;C:1492313439;G:1486507818;T:1831120188;N:0,150,150,,,1819412655,1492313439,1486507818,1831120188,0,SRX19807130,SRS17168877,SRA1612461,"Sun Yat-sen University|Department of Epidemiology, School of Public Healt",Sun Yat-sen University,2,0.93273,0.93086,0.08814,0.08711,0.67748,0.67696,0.5355,0.54253,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-29,Adult,Adult,Bone or Cartilage,Skeletal Element
76452,SRR24950188,SRX20708357,SRS18001302,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep1,OE1w1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep1,OE1w replicate 1,OE1w replicate 1,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,OE1w1_1.fq.gz OE1w1_2.fq.gz,fastq fastq,6792141900.0,22640473.0,OE1w1 1.fq.gz,0:150 1:150,A:1821318465;C:1573309073;G:1556399365;T:1841095017;N:19980,150,150,,,1821318465,1573309073,1556399365,1841095017,19980,SRX20708357,SRS18001302,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.92576,0.91367,0.07095,0.07022,0.74884,0.75012,0.52564,0.52623,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Juvenile,Juvenile,Heart,Cardiovascular System
76453,SRR24950189,SRX20708356,SRS18001301,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep3,CTL1w3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep3,CTL1w replicate 3,CTL1w replicate 3,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,CTL1w3_2.fq.gz CTL1w3_1.fq.gz,fastq fastq,6615956700.0,22053189.0,CTL1w3 1.fq.gz,0:150 1:150,A:1790825663;C:1516487260;G:1497904437;T:1810720169;N:19171,150,150,,,1790825663,1516487260,1497904437,1810720169,19171,SRX20708356,SRS18001301,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.93183,0.91562,0.07118,0.07012,0.7655,0.7682,0.53912,0.52899,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Juvenile,Juvenile,Heart,Cardiovascular System
76454,SRR24950190,SRX20708355,SRS18001300,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep2,CTL1w2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep2,CTL1w replicate 2,CTL1w replicate 2,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,CTL1w2_1.fq.gz CTL1w2_2.fq.gz,fastq fastq,6582133800.0,21940446.0,CTL1w2 1.fq.gz,0:150 1:150,A:1766322301;C:1524014072;G:1506429130;T:1785350030;N:18267,150,150,,,1766322301,1524014072,1506429130,1785350030,18267,SRX20708355,SRS18001300,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.93867,0.92389,0.06545,0.06458,0.76357,0.76583,0.53821,0.54255,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Juvenile,Juvenile,Heart,Cardiovascular System
76455,SRR24950191,SRX20708354,SRS18001299,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep1,CTL1w1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep1,CTL1w replicate 1,CTL1w replicate 1,RNA Seq for control littermate hearts at 1 week post 4 HT treatments  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,CTL1w1_2.fq.gz CTL1w1_1.fq.gz,fastq fastq,6781172100.0,22603907.0,CTL1w1 1.fq.gz,0:150 1:150,A:1804085074;C:1581571692;G:1567430366;T:1828066356;N:18612,150,150,,,1804085074,1581571692,1567430366,1828066356,18612,SRX20708354,SRS18001299,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.93867,0.91921,0.06237,0.06146,0.75858,0.76246,0.53972,0.53069,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Juvenile,Juvenile,Heart,Cardiovascular System
76456,SRR24950192,SRX20708353,SRS18001298,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments  rep3,OE3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  rep3,OE replicate 3,OE replicate 3,RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,OE3_1.fq.gz OE3_2.fq.gz,fastq fastq,6698218800.0,22327396.0,OE3 1.fq.gz,0:150 1:150,A:1810250125;C:1538223397;G:1526099522;T:1823631856;N:13900,150,150,,,1810250125,1538223397,1526099522,1823631856,13900,SRX20708353,SRS18001298,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.94309,0.93987,0.07727,0.07734,0.75645,0.75659,0.5045,0.52615,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Adult,Adult,Heart,Cardiovascular System
76457,SRR24950193,SRX20708352,SRS18001297,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments  rep2,OE2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  rep2,OE replicate 2,OE replicate 2,RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,OE2_2.fq.gz OE2_1.fq.gz,fastq fastq,6714114300.0,22380381.0,OE2 1.fq.gz,0:150 1:150,A:1821324029;C:1535274751;G:1521032470;T:1836469467;N:13583,150,150,,,1821324029,1535274751,1521032470,1836469467,13583,SRX20708352,SRS18001297,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.9438,0.94081,0.07627,0.07672,0.75116,0.75221,0.50222,0.53794,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Adult,Adult,Heart,Cardiovascular System
76458,SRR24950194,SRX20708351,SRS18001296,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments  rep1,OE1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  rep1,OE replicate 1,OE replicate 1,RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,OE1_2.fq.gz OE1_1.fq.gz,fastq fastq,6717241200.0,22390804.0,OE1 1.fq.gz,0:150 1:150,A:1820907924;C:1536957701;G:1517754438;T:1841608834;N:12303,150,150,,,1820907924,1536957701,1517754438,1841608834,12303,SRX20708351,SRS18001296,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.94313,0.94062,0.07826,0.07784,0.75526,0.7556,0.52759,0.53976,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Adult,Adult,Heart,Cardiovascular System
76459,SRR24950195,SRX20708350,SRS18001294,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for control littermate hearts at 2 month post 4 HT treatments  rep3,CTL3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for control littermate hearts at 1 month post 4 HT treatments  rep3,CTL replicate 3,CTL replicate 3,RNA Seq for control littermate hearts at 1 month post 4 HT treatments  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,CTL3_1.fq.gz CTL3_2.fq.gz,fastq fastq,6726357300.0,22421191.0,CTL3 1.fq.gz,0:150 1:150,A:1851349315;C:1512108580;G:1497745189;T:1865140192;N:14024,150,150,,,1851349315,1512108580,1497745189,1865140192,14024,SRX20708350,SRS18001294,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.94596,0.94425,0.06888,0.0684,0.76368,0.76493,0.51461,0.51708,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Adult,Adult,Heart,Cardiovascular System
76460,SRR24950198,SRX20708347,SRS18001292,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep3,OE1w3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep3,OE1w replicate 3,OE1w replicate 3,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,OE1w3_2.fq.gz OE1w3_1.fq.gz,fastq fastq,6593130600.0,21977102.0,OE1w3 1.fq.gz,0:150 1:150,A:1770061078;C:1529682678;G:1510949508;T:1782338558;N:98778,150,150,,,1770061078,1529682678,1510949508,1782338558,98778,SRX20708347,SRS18001292,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.93503,0.922,0.06588,0.06574,0.7503,0.75201,0.52969,0.53743,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Juvenile,Juvenile,Heart,Cardiovascular System
76461,SRR24950199,SRX20708346,SRS18001291,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep2,OE1w2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep2,OE1w replicate 2,OE1w replicate 2,RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,OE1w2_2.fq.gz OE1w2_1.fq.gz,fastq fastq,6742724700.0,22475749.0,OE1w2 1.fq.gz,0:150 1:150,A:1802906309;C:1568304698;G:1553625077;T:1817795677;N:92939,150,150,,,1802906309,1568304698,1553625077,1817795677,92939,SRX20708346,SRS18001291,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.93354,0.91844,0.06989,0.0686,0.74665,0.74888,0.52723,0.52812,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Juvenile,Juvenile,Heart,Cardiovascular System
76462,SRR24950200,SRX20708345,SRS18001290,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for control littermate hearts at 2 month post 4 HT treatments  rep2,CTL2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for control littermate hearts at 1 month post 4 HT treatments  rep2,CTL replicate 2,CTL replicate 2,RNA Seq for control littermate hearts at 1 month post 4 HT treatments  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,CTL2_2.fq.gz CTL2_1.fq.gz,fastq fastq,6733756500.0,22445855.0,CTL2 1.fq.gz,0:150 1:150,A:1852262818;C:1514940822;G:1497196598;T:1869342344;N:13918,150,150,,,1852262818,1514940822,1497196598,1869342344,13918,SRX20708345,SRS18001290,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.94813,0.94562,0.07048,0.06993,0.76049,0.76039,0.51828,0.52084,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Adult,Adult,Heart,Cardiovascular System
76463,SRR24950201,SRX20708344,SRS18001289,SRP444408,PRJNA984676,RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs,PRJNA984676,Other,To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.,,,,RNA Seq for control littermate hearts at 2 month post 4 HT treatments  rep1,CTL1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for control littermate hearts at 1 month post 4 HT treatments  rep1,CTL replicate 1,CTL replicate 1,RNA Seq for control littermate hearts at 1 month post 4 HT treatments  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP444408,,,CTL1_1.fq.gz CTL1_2.fq.gz,fastq fastq,6707934300.0,22359781.0,CTL1 1.fq.gz,0:150 1:150,A:1839600655;C:1511741414;G:1501312980;T:1855265253;N:13998,150,150,,,1839600655,1511741414,1501312980,1855265253,13998,SRX20708344,SRS18001289,SRA1657339,East China Normal University|School of Life Sciences,East China Normal University,2,0.94692,0.94575,0.06938,0.06922,0.76613,0.76654,0.51238,0.49316,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-06-16,Adult,Adult,Heart,Cardiovascular System