rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
33871,SRR30814554,SRX26215071,SRS22758079,SRP535175,PRJNA1165428,Danio rerio Transcriptome or Gene expression,PRJNA1165428,Other,RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.,,,,KO3,KO3,,strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 14|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish rfc2 ko03,zf ko 03,zf ko 03,Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X,,SRP535175,,,KO3_1.fastq KO3_2.fastq,fastq fastq,6572467676.0,21763138.0,KO3 1.fastq,0:151 1:151,A:1814369939;C:1452368734;G:1505310751;T:1800408231;N:10021,151,151,,,1814369939,1452368734,1505310751,1800408231,10021,SRX26215071,SRS22758079,SRA1980706,Chungnam National University|Department of Biology,Chungnam National University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,South Korea,2024-09-27,Larval,Larval,Whole Organism,All anatomical structures
33872,SRR30814555,SRX26215070,SRS22758078,SRP535175,PRJNA1165428,Danio rerio Transcriptome or Gene expression,PRJNA1165428,Other,RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.,,,,KO2,KO2,,strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 12|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish rfc2 ko02,zf ko 02,zf ko 02,Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X,,SRP535175,,,KO2_1.fastq KO2_2.fastq,fastq fastq,6712882576.0,22228088.0,KO2 1.fastq,0:151 1:151,A:1809986030;C:1515597384;G:1598845682;T:1788443120;N:10360,151,151,,,1809986030,1515597384,1598845682,1788443120,10360,SRX26215070,SRS22758078,SRA1980706,Chungnam National University|Department of Biology,Chungnam National University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,South Korea,2024-09-27,Larval,Larval,Whole Organism,All anatomical structures
33873,SRR30814556,SRX26215069,SRS22758076,SRP535175,PRJNA1165428,Danio rerio Transcriptome or Gene expression,PRJNA1165428,Other,RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.,,,,KO1,KO1,,strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 10|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish rfc2 ko01,zf ko 01,zf ko 01,Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X,,SRP535175,,,KO1_1.fastq KO1_2.fastq,fastq fastq,6172941004.0,20440202.0,KO1 1.fastq,0:151 1:151,A:1700989337;C:1362585978;G:1431740094;T:1677616401;N:9194,151,151,,,1700989337,1362585978,1431740094,1677616401,9194,SRX26215069,SRS22758076,SRA1980706,Chungnam National University|Department of Biology,Chungnam National University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,South Korea,2024-09-27,Larval,Larval,Whole Organism,All anatomical structures
33874,SRR30814557,SRX26215068,SRS22758077,SRP535175,PRJNA1165428,Danio rerio Transcriptome or Gene expression,PRJNA1165428,Other,RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.,,,,WT3,WT3,,strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 08|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish rfc2 wt03,zf wt 03,zf wt 03,Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X,,SRP535175,,,WT3_1.fastq WT3_2.fastq,fastq fastq,7481914402.0,24774551.0,WT3 1.fastq,0:151 1:151,A:2053911721;C:1669466343;G:1724274989;T:2034249790;N:11559,151,151,,,2053911721,1669466343,1724274989,2034249790,11559,SRX26215068,SRS22758077,SRA1980706,Chungnam National University|Department of Biology,Chungnam National University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,South Korea,2024-09-27,Larval,Larval,Whole Organism,All anatomical structures
33875,SRR30814558,SRX26215067,SRS22758074,SRP535175,PRJNA1165428,Danio rerio Transcriptome or Gene expression,PRJNA1165428,Other,RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.,,,,WT2,WT2,,strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 06|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish rfc2 wt02,zf wt 02,zf wt 02,Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X,,SRP535175,,,WT2_1.fastq WT2_2.fastq,fastq fastq,7406291488.0,24524144.0,WT2 1.fastq,0:151 1:151,A:2028130386;C:1659349646;G:1712132015;T:2006666583;N:12858,151,151,,,2028130386,1659349646,1712132015,2006666583,12858,SRX26215067,SRS22758074,SRA1980706,Chungnam National University|Department of Biology,Chungnam National University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,South Korea,2024-09-27,Larval,Larval,Whole Organism,All anatomical structures
33876,SRR30814559,SRX26215066,SRS22758075,SRP535175,PRJNA1165428,Danio rerio Transcriptome or Gene expression,PRJNA1165428,Other,RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish.,,,,WT1,WT1,,strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 04|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish rfc2 wt01,zf wt 01,zf wt 01,Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X,,SRP535175,,,WT1_1.fastq WT1_2.fastq,fastq fastq,7226611756.0,23929178.0,WT1 1.fastq,0:151 1:151,A:1947187816;C:1649828636;G:1705449995;T:1924134231;N:11078,151,151,,,1947187816,1649828636,1705449995,1924134231,11078,SRX26215066,SRS22758075,SRA1980706,Chungnam National University|Department of Biology,Chungnam National University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,South Korea,2024-09-27,Larval,Larval,Whole Organism,All anatomical structures
33952,SRR31021716,SRX26408835,SRS22928744,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 1 1,P120 SME 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B335|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B335,B335,B335,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B335_S35_R1_001.fastq.gz B335_S35_R2_001.fastq.gz,fastq fastq,1692783800.0,16927838.0,B335 S35 R1 001.fastq.gz,0:50 1:50,A:435169158;C:407357709;G:414261716;T:435986654;N:8563,50,50,,,435169158,407357709,414261716,435986654,8563,SRX26408835,SRS22928744,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33953,SRR31021717,SRX26408834,SRS22928745,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 0.1 3,P120 SLO 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B334|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B334,B334,B334,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B334_S34_R1_001.fastq.gz B334_S34_R2_001.fastq.gz,fastq fastq,1886363200.0,18863632.0,B334 S34 R1 001.fastq.gz,0:50 1:50,A:490356255;C:449743241;G:455258475;T:490994958;N:10271,50,50,,,490356255,449743241,455258475,490994958,10271,SRX26408834,SRS22928745,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33954,SRR31021718,SRX26408833,SRS22928747,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 0.1 2,P120 SLO 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B333|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B333,B333,B333,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B333_S2_R1_001.fastq.gz B333_S2_R2_001.fastq.gz,fastq fastq,2051063200.0,20510632.0,B333 S2 R1 001.fastq.gz,0:50 1:50,A:537236574;C:487312859;G:489581035;T:536921586;N:11146,50,50,,,537236574,487312859,489581035,536921586,11146,SRX26408833,SRS22928747,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33955,SRR31021719,SRX26408832,SRS22928741,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 0.1 1,P120 SLO 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B332|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B332,B332,B332,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B332_S32_R1_001.fastq.gz B332_S32_R2_001.fastq.gz,fastq fastq,1902518500.0,19025185.0,B332 S32 R1 001.fastq.gz,0:50 1:50,A:496999311;C:450985865;G:457467495;T:497055262;N:10567,50,50,,,496999311,450985865,457467495,497055262,10567,SRX26408832,SRS22928741,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33956,SRR31021720,SRX26408831,SRS22928742,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 10 3,N120 WHI 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B358|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B358,B358,B358,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B358_S58_R1_001.fastq.gz B358_S58_R2_001.fastq.gz,fastq fastq,3412618400.0,34126184.0,B358 S58 R1 001.fastq.gz,0:50 1:50,A:882127346;C:817215325;G:830793970;T:882463986;N:17773,50,50,,,882127346,817215325,830793970,882463986,17773,SRX26408831,SRS22928742,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33957,SRR31021721,SRX26408830,SRS22928743,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 10 2,N120 WHI 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B357|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B357,B357,B357,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B357_S57_R1_001.fastq.gz B357_S57_R2_001.fastq.gz,fastq fastq,2930483600.0,29304836.0,B357 S57 R1 001.fastq.gz,0:50 1:50,A:758920208;C:700274298;G:712310919;T:758962702;N:15473,50,50,,,758920208,700274298,712310919,758962702,15473,SRX26408830,SRS22928743,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33958,SRR31021722,SRX26408829,SRS22928746,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 10 1,N120 WHI 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B356|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B356,B356,B356,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B356_S56_R1_001.fastq.gz B356_S56_R2_001.fastq.gz,fastq fastq,2284414000.0,22844140.0,B356 S56 R1 001.fastq.gz,0:50 1:50,A:594288899;C:544894478;G:551263068;T:593955741;N:11814,50,50,,,594288899,544894478,551263068,593955741,11814,SRX26408829,SRS22928746,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33959,SRR31021723,SRX26408828,SRS22928740,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 1 3,N120 WME 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B355|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B355,B355,B355,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B355_S55_R1_001.fastq.gz B355_S55_R2_001.fastq.gz,fastq fastq,2176173500.0,21761735.0,B355 S55 R1 001.fastq.gz,0:50 1:50,A:566136122;C:518747894;G:524997369;T:566280934;N:11181,50,50,,,566136122,518747894,524997369,566280934,11181,SRX26408828,SRS22928740,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33960,SRR31021724,SRX26408827,SRS22928739,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 1 2,N120 WME 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B354|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B354,B354,B354,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B354_S54_R1_001.fastq.gz B354_S54_R2_001.fastq.gz,fastq fastq,1453456700.0,14534567.0,B354 S54 R1 001.fastq.gz,0:50 1:50,A:372508432;C:352568689;G:356955359;T:371416134;N:8086,50,50,,,372508432,352568689,356955359,371416134,8086,SRX26408827,SRS22928739,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33961,SRR31021725,SRX26408826,SRS22928748,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 1 1,N120 WME 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B353|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B353,B353,B353,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B353_S53_R1_001.fastq.gz B353_S53_R2_001.fastq.gz,fastq fastq,1650491800.0,16504918.0,B353 S53 R1 001.fastq.gz,0:50 1:50,A:425690515;C:395504907;G:402582077;T:426705722;N:8579,50,50,,,425690515,395504907,402582077,426705722,8579,SRX26408826,SRS22928748,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33962,SRR31021726,SRX26408825,SRS22928738,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 0.1 3,N120 WLO 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B352|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B352,B352,B352,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B352_S52_R1_001.fastq.gz B352_S52_R2_001.fastq.gz,fastq fastq,1346045100.0,13460451.0,B352 S52 R1 001.fastq.gz,0:50 1:50,A:346386405;C:323951010;G:329014244;T:346686818;N:6623,50,50,,,346386405,323951010,329014244,346686818,6623,SRX26408825,SRS22928738,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33963,SRR31021727,SRX26408824,SRS22928737,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 0.1 2,N120 WLO 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B351|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B351,B351,B351,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B351_S51_R1_001.fastq.gz B351_S51_R2_001.fastq.gz,fastq fastq,1506763300.0,15067633.0,B351 S51 R1 001.fastq.gz,0:50 1:50,A:388854340;C:361527972;G:367405227;T:388967763;N:7998,50,50,,,388854340,361527972,367405227,388967763,7998,SRX26408824,SRS22928737,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33964,SRR31021728,SRX26408823,SRS22928735,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,NH2 0.1 1,N120 WLO 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B350|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B350,B350,B350,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B350_S50_R1_001.fastq.gz B350_S50_R2_001.fastq.gz,fastq fastq,1428442600.0,14284426.0,B350 S50 R1 001.fastq.gz,0:50 1:50,A:366939696;C:343871821;G:350258778;T:367364804;N:7501,50,50,,,366939696,343871821,350258778,367364804,7501,SRX26408823,SRS22928735,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33965,SRR31021729,SRX26408822,SRS22928736,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 10 3,C120 THI 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B349|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B349,B349,B349,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B349_S49_R1_001.fastq.gz B349_S49_R2_001.fastq.gz,fastq fastq,1550515000.0,15505150.0,B349 S49 R1 001.fastq.gz,0:50 1:50,A:403378506;C:368600965;G:373988430;T:404539249;N:7850,50,50,,,403378506,368600965,373988430,404539249,7850,SRX26408822,SRS22928736,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33966,SRR31021730,SRX26408821,SRS22928734,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,Control 3,Z120 C 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B331|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B331,B331,B331,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B331_S31_R1_001.fastq.gz B331_S31_R2_001.fastq.gz,fastq fastq,2108365300.0,21083653.0,B331 S31 R1 001.fastq.gz,0:50 1:50,A:542633636;C:506240722;G:516054000;T:543425824;N:11118,50,50,,,542633636,506240722,516054000,543425824,11118,SRX26408821,SRS22928734,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33967,SRR31021731,SRX26408820,SRS22928733,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 10 2,C120 THI 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B348|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B348,B348,B348,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B348_S48_R1_001.fastq.gz B348_S48_R2_001.fastq.gz,fastq fastq,1606689800.0,16066898.0,B348 S48 R1 001.fastq.gz,0:50 1:50,A:417464063;C:382987928;G:388189552;T:418040054;N:8203,50,50,,,417464063,382987928,388189552,418040054,8203,SRX26408820,SRS22928733,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33968,SRR31021732,SRX26408819,SRS22928728,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 10 1,C120 THI 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B347|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B347,B347,B347,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B347_S47_R1_001.fastq.gz B347_S47_R2_001.fastq.gz,fastq fastq,2913827500.0,29138275.0,B347 S47 R1 001.fastq.gz,0:50 1:50,A:761302997;C:691474819;G:698510506;T:762523760;N:15418,50,50,,,761302997,691474819,698510506,762523760,15418,SRX26408819,SRS22928728,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33969,SRR31021733,SRX26408818,SRS22928725,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 1 3,C120 TME 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B346|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B346,B346,B346,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B346_S46_R1_001.fastq.gz B346_S46_R2_001.fastq.gz,fastq fastq,3160750400.0,31607504.0,B346 S46 R1 001.fastq.gz,0:50 1:50,A:813674918;C:759351240;G:773075909;T:814631535;N:16798,50,50,,,813674918,759351240,773075909,814631535,16798,SRX26408818,SRS22928725,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33970,SRR31021734,SRX26408817,SRS22928732,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 1 2,C120 TME 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B345|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B345,B345,B345,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B345_S45_R1_001.fastq.gz B345_S45_R2_001.fastq.gz,fastq fastq,2914635800.0,29146358.0,B345 S45 R1 001.fastq.gz,0:50 1:50,A:746949857;C:703501695;G:715761917;T:748406578;N:15753,50,50,,,746949857,703501695,715761917,748406578,15753,SRX26408817,SRS22928732,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33971,SRR31021735,SRX26408816,SRS22928731,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 1 1,C120 TME 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B344|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B344,B344,B344,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B344_S44_R1_001.fastq.gz B344_S44_R2_001.fastq.gz,fastq fastq,4554368900.0,45543689.0,B344 S44 R1 001.fastq.gz,0:50 1:50,A:1165101493;C:1101095529;G:1122931150;T:1165217834;N:22894,50,50,,,1165101493,1101095529,1122931150,1165217834,22894,SRX26408816,SRS22928731,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33972,SRR31021736,SRX26408815,SRS22928729,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 0.1 3,C120 TLO 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B343|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B343,B343,B343,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B343_S43_R1_001.fastq.gz B343_S43_R2_001.fastq.gz,fastq fastq,2380475200.0,23804752.0,B343 S43 R1 001.fastq.gz,0:50 1:50,A:607581751;C:575091547;G:590138251;T:607650992;N:12659,50,50,,,607581751,575091547,590138251,607650992,12659,SRX26408815,SRS22928729,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33973,SRR31021737,SRX26408814,SRS22928730,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 0.1 2,C120 TLO 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B342|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B342,B342,B342,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B342_S42_R1_001.fastq.gz B342_S42_R2_001.fastq.gz,fastq fastq,3651867700.0,36518677.0,B342 S42 R1 001.fastq.gz,0:50 1:50,A:932588654;C:882930334;G:902681378;T:933649498;N:17836,50,50,,,932588654,882930334,902681378,933649498,17836,SRX26408814,SRS22928730,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33974,SRR31021738,SRX26408813,SRS22928723,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,COOH 0.1 1,C120 TLO 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B341|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B341,B341,B341,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B341_S3_R1_001.fastq.gz B341_S3_R2_001.fastq.gz,fastq fastq,2777695600.0,27776956.0,B341 S3 R1 001.fastq.gz,0:50 1:50,A:703256824;C:685127064;G:689608205;T:699688785;N:14722,50,50,,,703256824,685127064,689608205,699688785,14722,SRX26408813,SRS22928723,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33975,SRR31021739,SRX26408812,SRS22928727,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 10 3,P120 SHI 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B340|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B340,B340,B340,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B340_S40_R1_001.fastq.gz B340_S40_R2_001.fastq.gz,fastq fastq,2893779400.0,28937794.0,B340 S40 R1 001.fastq.gz,0:50 1:50,A:751721935;C:690399655;G:699481416;T:752160975;N:15419,50,50,,,751721935,690399655,699481416,752160975,15419,SRX26408812,SRS22928727,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33976,SRR31021740,SRX26408811,SRS22928720,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 10 1,P120 SHI 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B338|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B338,B338,B338,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B338_S38_R1_001.fastq.gz B338_S38_R2_001.fastq.gz,fastq fastq,2525250300.0,25252503.0,B338 S38 R1 001.fastq.gz,0:50 1:50,A:654388023;C:601232675;G:613558159;T:656058712;N:12731,50,50,,,654388023,601232675,613558159,656058712,12731,SRX26408811,SRS22928720,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33977,SRR31021741,SRX26408810,SRS22928724,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 1 3,P120 SME 3,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B337|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B337,B337,B337,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B337_S37_R1_001.fastq.gz B337_S37_R2_001.fastq.gz,fastq fastq,2482377400.0,24823774.0,B337 S37 R1 001.fastq.gz,0:50 1:50,A:643559426;C:592015685;G:602120561;T:644668977;N:12751,50,50,,,643559426,592015685,602120561,644668977,12751,SRX26408810,SRS22928724,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33978,SRR31021742,SRX26408809,SRS22928722,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 1 2,P120 SME 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B336|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B336,B336,B336,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B336_S36_R1_001.fastq.gz B336_S36_R2_001.fastq.gz,fastq fastq,1946578400.0,19465784.0,B336 S36 R1 001.fastq.gz,0:50 1:50,A:504859512;C:464724973;G:471834380;T:505149326;N:10209,50,50,,,504859512,464724973,471834380,505149326,10209,SRX26408809,SRS22928722,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33979,SRR31021743,SRX26408808,SRS22928726,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,PS 10 2,P120 SHI 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B339|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B339,B339,B339,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B339_S39_R1_001.fastq.gz B339_S39_R2_001.fastq.gz,fastq fastq,2199002900.0,21990029.0,B339 S39 R1 001.fastq.gz,0:50 1:50,A:570993329;C:523663058;G:532594297;T:571740868;N:11348,50,50,,,570993329,523663058,532594297,571740868,11348,SRX26408808,SRS22928726,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33980,SRR31021744,SRX26408807,SRS22928721,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,Control 2,Z120 C 2,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B330|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B330,B330,B330,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B330_S1_R1_001.fastq.gz B330_S1_R2_001.fastq.gz,fastq fastq,2070472100.0,20704721.0,B330 S1 R1 001.fastq.gz,0:50 1:50,A:537760107;C:494573795;G:500793218;T:537333858;N:11122,50,50,,,537760107,494573795,500793218,537333858,11122,SRX26408807,SRS22928721,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
33981,SRR31021745,SRX26408806,SRS22928719,SRP539040,PRJNA1173915,Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL,PRJNA1173915,Other,This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues  by integrating comparative model embryos  cutting edge bioimaging  omics  and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures.,,,,Control 1,Z120 C 1,,strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B329|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: B329,B329,B329,RNA was isolated and purified by the RNeasy Mini Kit Qiagen  Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis  and RNA quantity was determined using a spectrofluorometer MySpec  VWR  Radnor  United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP539040,,,B329_S29_R1_001.fastq.gz B329_S29_R2_001.fastq.gz,fastq fastq,2846303000.0,28463030.0,B329 S29 R1 001.fastq.gz,0:50 1:50,A:732723326;C:679449612;G:698675459;T:735439047;N:15556,50,50,,,732723326,679449612,698675459,735439047,15556,SRX26408806,SRS22928719,SRA1992799,University of Southern Denmark|Department of Biology,University of Southern Denmark,,,,,,,,,,,,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Denmark,2024-10-17,Larval,Larval,Whole Organism,All anatomical structures
48115,SRR7252252,SRX4156979,SRS3369496,SRP149646,PRJNA453111,Danio rerio Transcriptome or Gene expression,PRJNA453111,Other,The effect of oligosaccharides on zebrafish genes,,,,Model organism or animal sample from Danio rerio 02,zebrafish 2,,breed:zebrafish|dev stage:sexual maturity|sex:not determined|tissue:the whole fish|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Raw sequence reads,T02,T02,Liver of FOS exposure,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP149646,,,Zebrafish_G017-T02_good_2.fq Zebrafish_G017-T02_good_1.fq,fastq fastq,14376728630.0,48016590.0,Zebrafish G017 T02 good 2.fq,0:149.71 1:149.71,A:3691193836;C:3492856068;G:3505759208;T:3686065491;N:854027,149,149,,,3691193836,3492856068,3505759208,3686065491,854027,SRX4156979,SRS3369496,SRA714653,Henan University of Scientific and Technology|College of Animal Science and Technology,Henan University of Scientific and Technology,2,0.91739,0.92142,0.02484,0.02505,0.6873,0.69402,0.47704,0.47922,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-06-04,Undetermined,Undetermined,Whole Organism,All anatomical structures
48116,SRR7252253,SRX4156978,SRS3369495,SRP149646,PRJNA453111,Danio rerio Transcriptome or Gene expression,PRJNA453111,Other,The effect of oligosaccharides on zebrafish genes,,,,Model organism or animal sample from Danio rerio,zebrafish,,breed:zebrafish|dev stage:sexual maturity|sex:not determined|tissue:the whole fish|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio Raw sequence reads,T01,T01,Liver of control,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP149646,,,Zebrafish_G017-T01_good_1.fq Zebrafish_G017-T01_good_2.fq,fastq fastq,14807578386.0,49468651.0,Zebrafish G017 T01 good 2.fq,0:149.67 1:149.67,A:3802207986;C:3595045362;G:3614407174;T:3795034464;N:883400,149,149,,,3802207986,3595045362,3614407174,3795034464,883400,SRX4156978,SRS3369495,SRA714653,Henan University of Scientific and Technology|College of Animal Science and Technology,Henan University of Scientific and Technology,2,0.92048,0.92419,0.03167,0.03195,0.67105,0.67489,0.43695,0.44187,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-06-04,Undetermined,Undetermined,Whole Organism,All anatomical structures
48313,SRR7223661,SRX4130205,SRS3344559,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,TrisCDPS1,,strain:Danio rerio|age:14 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of TrisCDPS treated zf: 5 day larvae,TrisCDPS1,TrisCDPS1,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,TrisCDPS1_2.fq.gz TrisCDPS1_1.fq.gz,fastq fastq,7552017900.0,25173393.0,TrisCDPS1 2.fq.gz,0:150 1:150,A:2064740694;C:1718323084;G:1724225343;T:2043708648;N:1020131,150,150,,,2064740694,1718323084,1724225343,2043708648,1020131,SRX4130205,SRS3344559,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92864,0.92381,0.09537,0.09435,0.71086,0.71467,0.47551,0.47766,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48314,SRR7223662,SRX4130204,SRS3344558,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,DCDPS3,,strain:Danio rerio|age:13 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of DCDPS treated zf: 5 day larvae,DCDPS3,DCDPS3,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,DCDPS3_1.fq.gz DCDPS3_2.fq.gz,fastq fastq,8882830500.0,29609435.0,DCDPS3 2.fq.gz,0:150 1:150,A:2427234479;C:2021300509;G:2031701758;T:2401395227;N:1198527,150,150,,,2427234479,2021300509,2031701758,2401395227,1198527,SRX4130204,SRS3344558,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92596,0.91455,0.09347,0.09189,0.7108,0.71478,0.47276,0.48212,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48315,SRR7223663,SRX4130203,SRS3344557,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,TCDPS1,,strain:Danio rerio|age:8 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of TCDPS treated zf: 5 day larvae,TCDPS1,TCDPS1,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,TCDPS1_1.fq.gz TCDPS1_2.fq.gz,fastq fastq,7523076900.0,25076923.0,TCDPS1 1.fq.gz,0:150 1:150,A:2038154575;C:1731802031;G:1735048059;T:2017093917;N:978318,150,150,,,2038154575,1731802031,1735048059,2017093917,978318,SRX4130203,SRS3344557,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92608,0.92913,0.08659,0.08656,0.71425,0.71721,0.46846,0.46712,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48316,SRR7223664,SRX4130202,SRS3344556,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,C3,,strain:Danio rerio|age:7 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zf: 5 day larvae,C3,C3,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,C3_1.fq.gz C3_2.fq.gz,fastq fastq,6543797400.0,21812658.0,C3 2.fq.gz,0:150 1:150,A:1738781839;C:1536296581;G:1551651858;T:1716817665;N:249457,150,150,,,1738781839,1536296581,1551651858,1716817665,249457,SRX4130202,SRS3344556,SRA711726,University of Jinan|Environment,University of Jinan,2,0.93202,0.93617,0.06777,0.06811,0.71064,0.71892,0.47813,0.47374,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48317,SRR7223665,SRX4130201,SRS3344555,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,C2,,strain:Danio rerio|age:6 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zf: 5 day larvae,C2,C2,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,C2_1.fq.gz C2_2.fq.gz,fastq fastq,7622981400.0,25409938.0,C2 1.fq.gz,0:150 1:150,A:2078412920;C:1740455140;G:1746462300;T:2056660891;N:990149,150,150,,,2078412920,1740455140,1746462300,2056660891,990149,SRX4130201,SRS3344555,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92699,0.92374,0.09404,0.09306,0.71234,0.71622,0.46627,0.46522,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48318,SRR7223666,SRX4130200,SRS3344554,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,C1,,strain:Danio rerio|age:5 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zf: 5 day larvae,C1,C1,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,C1_1.fq.gz C1_2.fq.gz,fastq fastq,6629787900.0,22099293.0,C1 1.fq.gz,0:150 1:150,A:1835589982;C:1485010662;G:1491104537;T:1817331587;N:751132,150,150,,,1835589982,1485010662,1491104537,1817331587,751132,SRX4130200,SRS3344554,SRA711726,University of Jinan|Environment,University of Jinan,2,0.89108,0.88492,0.09317,0.09156,0.718,0.7233,0.47294,0.47377,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48319,SRR7223667,SRX4130199,SRS3344553,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,DCDPS2,,strain:Danio rerio|age:12 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of DCDPS treated zf: 5 day larvae,DCDPS2,DCDPS2,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,DCDPS2_1.fq.gz DCDPS2_2.fq.gz,fastq fastq,8040624600.0,26802082.0,DCDPS2 1.fq.gz,0:150 1:150,A:2205838635;C:1822959368;G:1832567991;T:2178177040;N:1081566,150,150,,,2205838635,1822959368,1832567991,2178177040,1081566,SRX4130199,SRS3344553,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92586,0.92198,0.09355,0.09254,0.71078,0.71652,0.47953,0.47275,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48320,SRR7223668,SRX4130198,SRS3344552,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,DCDPS1,,strain:Danio rerio|age:11 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of DCDPS treated zf: 5 day larvae,DCDPS1,DCDPS1,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,DCDPS1_2.fq.gz DCDPS1_1.fq.gz,fastq fastq,8599461900.0,28664873.0,DCDPS1 2.fq.gz,0:150 1:150,A:2345534916;C:1963958724;G:1968901667;T:2319904936;N:1161657,150,150,,,2345534916,1963958724,1968901667,2319904936,1161657,SRX4130198,SRS3344552,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92368,0.92723,0.08764,0.08731,0.71547,0.71971,0.4813,0.47995,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-05-27,Larval,Larval,Whole Organism,All anatomical structures
48321,SRR7223669,SRX4130197,SRS3344551,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,TCDPS3,,strain:Danio rerio|age:10 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of TCDPS treated zf: 5 day larvae,TCDPS3,TCDPS3,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,TCDPS3_1.fq.gz TCDPS3_2.fq.gz,fastq fastq,7963502100.0,26545007.0,TCDPS3 2.fq.gz,0:150 1:150,A:2163154757;C:1827132936;G:1831483410;T:2140658978;N:1072019,150,150,,,2163154757,1827132936,1831483410,2140658978,1072019,SRX4130197,SRS3344551,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92803,0.92935,0.08694,0.08709,0.71157,0.71543,0.4691,0.46764,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48322,SRR7223670,SRX4130196,SRS3344550,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,TCDPS2,,strain:Danio rerio|age:9 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of TCDPS treated zf: 5 day larvae,TCDPS2,TCDPS2,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,TCDPS2_1.fq.gz TCDPS2_2.fq.gz,fastq fastq,8080785600.0,26935952.0,TCDPS2 2.fq.gz,0:150 1:150,A:2207688944;C:1842341306;G:1846129472;T:2183533934;N:1091944,150,150,,,2207688944,1842341306,1846129472,2183533934,1091944,SRX4130196,SRS3344550,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92773,0.92439,0.09326,0.09299,0.71447,0.71877,0.4689,0.4801,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48323,SRR7223671,SRX4130195,SRS3344549,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,TrisCDPS3,,strain:Danio rerio|age:16 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of TrisCDPS treated zf: 5 day larvae,TrisCDPS3,TrisCDPS3,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,TrisCDPS3_1.fq.gz TrisCDPS3_2.fq.gz,fastq fastq,9172719000.0,30575730.0,TrisCDPS3 1.fq.gz,0:150 1:150,A:2507937903;C:2088057682;G:2095938157;T:2479548210;N:1237048,150,150,,,2507937903,2088057682,2095938157,2479548210,1237048,SRX4130195,SRS3344549,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92421,0.92576,0.09405,0.09332,0.71082,0.7148,0.47786,0.47144,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-12-31,Larval,Larval,Whole Organism,All anatomical structures
48324,SRR7223672,SRX4130194,SRS3344548,SRP149041,PRJNA473201,Danio rerio Genome sequencing,PRJNA473201,Other,To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides,,,,,TrisCDPS2,,strain:Danio rerio|age:15 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of TrisCDPS treated zf: 5 day larvae,TrisCDPS2,TrisCDPS2,TopHat FPKM FDR<0.05,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP149041,,,TrisCDPS2_2.fq.gz TrisCDPS2_1.fq.gz,fastq fastq,7161083100.0,23870277.0,TrisCDPS2 1.fq.gz,0:150 1:150,A:1958680431;C:1628149492;G:1635229167;T:1937833061;N:1190949,150,150,,,1958680431,1628149492,1635229167,1937833061,1190949,SRX4130194,SRS3344548,SRA711726,University of Jinan|Environment,University of Jinan,2,0.92545,0.92016,0.09453,0.09357,0.70883,0.71401,0.47093,0.47799,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-05-27,Larval,Larval,Whole Organism,All anatomical structures
49058,SRR7637828,SRX4501382,SRS3622149,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,FiberTwo,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut11|BioSampleModel:Model organism or animal,,,,,,,,,Fiber2,FiberTwo,FiberTwo,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,SFb2_20180308_CTCAAT_S41_L002_R1_001.fastq.gz SFb2_20180308_CTCAAT_S41_L002_R2_001.fastq.gz,fastq fastq,10494618988.0,34750394.0,SFb2 20180308 CTCAAT S41 L002 R2 001.fastq.gz,0:151 1:151,A:2756954289;C:2479858860;G:2559922727;T:2697539679;N:343433,151,151,,,2756954289,2479858860,2559922727,2697539679,343433,SRX4501382,SRS3622149,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94475,0.94746,0.03971,0.03937,0.75771,0.76108,0.54085,0.52797,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-08-02,Adult,Adult,Whole Organism,All anatomical structures
49059,SRR7637829,SRX4501381,SRS3622148,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,BeadThree,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut9|BioSampleModel:Model organism or animal,,,,,,,,,Bead3,BeadThree,BeadThree,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,MB3_20180308_CGACTG_S39_L002_R2_001.fastq.gz MB3_20180308_CGACTG_S39_L002_R1_001.fastq.gz,fastq fastq,5583089402.0,18487051.0,MB3 20180308 CGACTG S39 L002 R1 001.fastq.gz,0:151 1:151,A:1460792721;C:1322839967;G:1369668696;T:1429612084;N:175934,151,151,,,1460792721,1322839967,1369668696,1429612084,175934,SRX4501381,SRS3622148,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94237,0.9468,0.04223,0.04177,0.74194,0.74499,0.54818,0.55571,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49060,SRR7637830,SRX4501380,SRS3622147,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,FiberOne,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut10|BioSampleModel:Model organism or animal,,,,,,,,,Fiber1,FiberOne,FiberOne,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,SFb1_20180308_CGCATA_S40_L002_R2_001.fastq.gz SFb1_20180308_CGCATA_S40_L002_R1_001.fastq.gz,fastq fastq,7368174860.0,24397930.0,SFb1 20180308 CGCATA S40 L002 R2 001.fastq.gz,0:151 1:151,A:1936361048;C:1742614765;G:1801958963;T:1887001771;N:238313,151,151,,,1936361048,1742614765,1801958963,1887001771,238313,SRX4501380,SRS3622147,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94421,0.94804,0.04014,0.03969,0.75501,0.75775,0.52951,0.54195,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49061,SRR7637831,SRX4501379,SRS3622146,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,ControlTwo,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut2|BioSampleModel:Model organism or animal,,,,,,,,,Control2,ControlTwo,ControlTwo,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,ck2_20180308N_CAGCGT_S80_R2_001.fastq.gz ck2_20180308N_CAGCGT_S80_R1_001.fastq.gz,fastq fastq,9368247776.0,31020688.0,ck2 20180308N CAGCGT S80 R1 001.fastq.gz,0:151 1:151,A:2460392017;C:2207268196;G:2315640897;T:2384916572;N:30094,151,151,,,2460392017,2207268196,2315640897,2384916572,30094,SRX4501379,SRS3622146,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94874,0.81138,0.04085,0.0318,0.74093,0.75442,0.52969,0.52322,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49062,SRR7637832,SRX4501378,SRS3622145,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,ControlThree,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut3|BioSampleModel:Model organism or animal,,,,,,,,,Control3,ControlThree,ControlThree,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,ck3_20180308N_CATACC_S81_R2_001.fastq.gz ck3_20180308N_CATACC_S81_R1_001.fastq.gz,fastq fastq,8156423852.0,27008026.0,ck3 20180308N CATACC S81 R2 001.fastq.gz,0:151 1:151,A:2141586323;C:1928412128;G:2019757092;T:2066642037;N:26272,151,151,,,2141586323,1928412128,2019757092,2066642037,26272,SRX4501378,SRS3622145,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94991,0.80786,0.03753,0.02937,0.743,0.7581,0.52953,0.51767,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49063,SRR7637833,SRX4501377,SRS3622143,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,FragmentOne,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut4|BioSampleModel:Model organism or animal,,,,,,,,,Fragment1,FragmentOne,FragmentOne,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,FG1_20180308N_CCAGTT_S82_R1_001.fastq.gz FG1_20180308N_CCAGTT_S82_R2_001.fastq.gz,fastq fastq,10309384268.0,34137034.0,FG1 20180308N CCAGTT S82 R2 001.fastq.gz,0:151 1:151,A:2711920404;C:2428019743;G:2538726593;T:2630683876;N:33652,151,151,,,2711920404,2428019743,2538726593,2630683876,33652,SRX4501377,SRS3622143,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.95319,0.81466,0.0366,0.02838,0.76729,0.78139,0.54501,0.54542,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-08-02,Adult,Adult,Whole Organism,All anatomical structures
49064,SRR7637834,SRX4501376,SRS3622144,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,ControlOne,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut1|BioSampleModel:Model organism or animal,,,,,,,,,Control1,ControlOne,ControlOne,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,ck1_20180308N_CACTTC_S79_R1_001.fastq.gz ck1_20180308N_CACTTC_S79_R2_001.fastq.gz,fastq fastq,8302376526.0,27491313.0,ck1 20180308N CACTTC S79 R1 001.fastq.gz,0:151 1:151,A:2185378613;C:1951420825;G:2049874039;T:2115676173;N:26876,151,151,,,2185378613,1951420825,2049874039,2115676173,26876,SRX4501376,SRS3622144,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.9485,0.80065,0.04239,0.03302,0.74172,0.7567,0.52236,0.53217,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49065,SRR7637835,SRX4501375,SRS3622142,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,FiberThree,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut12|BioSampleModel:Model organism or animal,,,,,,,,,Fiber3,FiberThree,FiberThree,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,SFb3_20180308_CTGAGC_S42_L002_R2_001.fastq.gz SFb3_20180308_CTGAGC_S42_L002_R1_001.fastq.gz,fastq fastq,8052778660.0,26664830.0,SFb3 20180308 CTGAGC S42 L002 R2 001.fastq.gz,0:151 1:151,A:2108582357;C:1909439595;G:1976426950;T:2058076799;N:252959,151,151,,,2108582357,1909439595,1976426950,2058076799,252959,SRX4501375,SRS3622142,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94666,0.94941,0.03962,0.0395,0.75408,0.75737,0.52613,0.54345,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49066,SRR7637836,SRX4501374,SRS3622141,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,BeadOne,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut7|BioSampleModel:Model organism or animal,,,,,,,,,Bead1,BeadOne,BeadOne,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,MB1_20180308_CCTCCT_S37_L002_R1_001.fastq.gz MB1_20180308_CCTCCT_S37_L002_R2_001.fastq.gz,fastq fastq,6907591036.0,22872818.0,MB1 20180308 CCTCCT S37 L002 R2 001.fastq.gz,0:151 1:151,A:1796574129;C:1649557969;G:1702822523;T:1758411861;N:224554,151,151,,,1796574129,1649557969,1702822523,1758411861,224554,SRX4501374,SRS3622141,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94402,0.94831,0.03903,0.03905,0.74444,0.74799,0.55334,0.55731,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49067,SRR7637837,SRX4501373,SRS3622140,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,BeadTwo,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut8|BioSampleModel:Model organism or animal,,,,,,,,,Bead2,BeadTwo,BeadTwo,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,MB2_20180308_CGAACT_S38_L002_R1_001.fastq.gz MB2_20180308_CGAACT_S38_L002_R2_001.fastq.gz,fastq fastq,8790666132.0,29108166.0,MB2 20180308 CGAACT S38 L002 R2 001.fastq.gz,0:151 1:151,A:2308382253;C:2076549882;G:2139570034;T:2265871851;N:292112,151,151,,,2308382253,2076549882,2139570034,2265871851,292112,SRX4501373,SRS3622140,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.9414,0.94541,0.04298,0.04231,0.74162,0.74578,0.54352,0.54266,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49068,SRR7637838,SRX4501372,SRS3622137,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,FragmentTwo,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut5|BioSampleModel:Model organism or animal,,,,,,,,,Fragment2,FragmentTwo,FragmentTwo,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,FG2_20180308N_CCGAAG_S83_R1_001.fastq.gz FG2_20180308N_CCGAAG_S83_R2_001.fastq.gz,fastq fastq,9210063196.0,30496898.0,FG2 20180308N CCGAAG S83 R2 001.fastq.gz,0:151 1:151,A:2407480323;C:2183272173;G:2291489636;T:2327790772;N:30292,151,151,,,2407480323,2183272173,2291489636,2327790772,30292,SRX4501372,SRS3622137,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.95304,0.81491,0.03815,0.03093,0.75532,0.7696,0.52024,0.54303,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49069,SRR7637839,SRX4501371,SRS3622139,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,FragmentThree,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut6|BioSampleModel:Model organism or animal,,,,,,,,,Fragment3,FragmentThree,FragmentThree,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,FG3_20180308N_CCGTGA_S84_R1_001.fastq.gz FG3_20180308N_CCGTGA_S84_R2_001.fastq.gz,fastq fastq,7568963788.0,25062794.0,FG3 20180308N CCGTGA S84 R1 001.fastq.gz,0:151 1:151,A:1979865584;C:1789546939;G:1882858707;T:1916667688;N:24870,151,151,,,1979865584,1789546939,1882858707,1916667688,24870,SRX4501371,SRS3622139,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.95309,0.81064,0.03664,0.02853,0.75499,0.77001,0.53024,0.54512,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures
49243,SRR7824324,SRX4675365,SRS3769144,SRP161624,PRJNA490559,GLDC KO ZEBRAFISH,PRJNA490559,Other,Differential Gene expression of 7 dpf larvae comparing +/+ and  /  GLDC KO larvae,,,,,WT,,strain:TL|dev stage:7 dpf|sex:not determined|tissue:whole embryo|genotype:gldc+/+|BioSampleModel:Model organism or animal,,,,,,,,,Danio Rerio 7 dpf GLDC+/+,GLDC WT,GLDC WT,Library preparation was performed using the Truseq RNA Illumina. 13 PCR cycles were required to amplify cDNA libraries. Libraries were quantified by Nanodrop and BioAnalyzer. All libraries were diluted to 10 nM and normalized with the Miseq SR50 v2. Libraries were pooled to equimolar concentration and multiplexed by 6 samples per lane.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP161624,,assembly:GRCz10 genome|loader:fastq load.py,._GLDC_whole7dpf_WT3_S8_L002_R2_001.fastq ._GLDC_whole7dpf_WT3_S8_L003_R1_001.fastq ._GLDC_whole7dpf_WT3_S8_L003_R2_001.fastq ._GLDC_whole7dpf_WT3_S8_L004_R2_001.fastq ._GLDC_whole7dpf_WT3_S8_L002_R1_001.fastq GLDC_whole7dpf_WT2_S7_L001_R2_001.fastq GLDC_whole7dpf_WT2_S7_L002_R1_001.fastq GLDC_whole7dpf_WT2_S7_L002_R2_001.fastq GLDC_whole7dpf_WT2_S7_L003_R1_001.fastq GLDC_whole7dpf_WT2_S7_L004_R1_001.fastq GLDC_whole7dpf_WT2_S7_L004_R2_001.fastq GLDC_whole7dpf_WT3_S8_L001_R1_001.fastq GLDC_whole7dpf_WT3_S8_L001_R2_001.fastq GLDC_whole7dpf_WT3_S8_L002_R1_001.fastq GLDC_whole7dpf_WT3_S8_L002_R2_001.fastq GLDC_whole7dpf_WT3_S8_L003_R1_001.fastq GLDC_whole7dpf_WT3_S8_L003_R2_001.fastq GLDC_whole7dpf_WT3_S8_L004_R2_001.fastq ._GLDC_whole7dpf_WT3_S8_L001_R2_001.fastq ._GLDC_whole7dpf_WT3_S8_L001_R1_001.fastq ._GLDC_whole7dpf_WT2_S7_L004_R2_001.fastq ._GLDC_whole7dpf_WT2_S7_L004_R1_001.fastq ._GLDC_whole7dpf_WT2_S7_L003_R1_001.fastq ._GLDC_whole7dpf_WT2_S7_L002_R2_001.fastq ._GLDC_whole7dpf_WT2_S7_L002_R1_001.fastq ._GLDC_whole7dpf_WT2_S7_L001_R2_001.fastq ._GLDC_whole7dpf_WT2_S7_L001_R1_001.fastq ._GLDC_whole7dpf_WT1_S6_L004_R2_001.fastq ._GLDC_whole7dpf_WT1_S6_L003_R2_001.fastq ._GLDC_whole7dpf_WT1_S6_L002_R1_001.fastq ._GLDC_whole7dpf_WT1_S6_L001_R2_001.fastq ._GLDC_whole7dpf_WT1_S6_L001_R1_001.fastq GLDC_whole7dpf_WT2_S7_L001_R1_001.fastq GLDC_whole7dpf_WT1_S6_L004_R2_001.fastq GLDC_whole7dpf_WT1_S6_L003_R2_001.fastq GLDC_whole7dpf_WT1_S6_L002_R1_001.fastq GLDC_whole7dpf_WT1_S6_L001_R2_001.fastq GLDC_whole7dpf_WT1_S6_L001_R1_001.fastq,fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq,450528.0,3744.0,WT.zip.tar,,A:109616;C:106322;G:107396;T:108223;N:18971,,,,,109616,106322,107396,108223,18971,SRX4675365,SRS3769144,SRA772670,CRCHUM|NEUROSCIENCES,CRCHUM,2,0.91448,0.93765,0.05757,0.05369,0.98117,0.98135,0.49734,0.48404,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Canada,2021-02-25,Larval,Larval,Whole Organism,All anatomical structures
49244,SRR7824325,SRX4675364,SRS3769145,SRP161624,PRJNA490559,GLDC KO ZEBRAFISH,PRJNA490559,Other,Differential Gene expression of 7 dpf larvae comparing +/+ and  /  GLDC KO larvae,,,,,HM,,strain:TL|dev stage:7 dpf|sex:not determined|tissue:whole embryo|genotype:gldc / |BioSampleModel:Model organism or animal,,,,,,,,,Danio Rerio 7 dpf GLDC / ,GLDC HM,GLDC HM,Library preparation was performed using the Truseq RNA Illumina. 13 PCR cycles were required to amplify cDNA libraries. Libraries were quantified by Nanodrop and BioAnalyzer. All libraries were diluted to 10 nM and normalized with the Miseq SR50 v2. Libraries were pooled to equimolar concentration and multiplexed by 6 samples per lane.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,SRP161624,,assembly:GRCz10 genome|loader:fastq load.py,._GLDC_whole7dpf_HM1_S9_L001_R1_001.fastq ._GLDC_whole7dpf_HM1_S9_L001_R2_001.fastq ._GLDC_whole7dpf_HM1_S9_L002_R1_001.fastq ._GLDC_whole7dpf_HM1_S9_L002_R2_001.fastq ._GLDC_whole7dpf_HM1_S9_L003_R1_001.fastq ._GLDC_whole7dpf_HM1_S9_L003_R2_001.fastq ._GLDC_whole7dpf_HM1_S9_L004_R1_001.fastq ._GLDC_whole7dpf_HM1_S9_L004_R2_001.fastq ._GLDC_whole7dpf_HM2_S10_L001_R1_001.fastq ._GLDC_whole7dpf_HM2_S10_L001_R2_001.fastq ._GLDC_whole7dpf_HM2_S10_L002_R1_001.fastq ._GLDC_whole7dpf_HM2_S10_L002_R2_001.fastq ._GLDC_whole7dpf_HM2_S10_L003_R1_001.fastq ._GLDC_whole7dpf_HM2_S10_L003_R2_001.fastq ._GLDC_whole7dpf_HM2_S10_L004_R2_001.fastq ._GLDC_whole7dpf_HM3_S11_L001_R1_001.fastq ._GLDC_whole7dpf_HM3_S11_L001_R2_001.fastq ._GLDC_whole7dpf_HM3_S11_L002_R1_001.fastq ._GLDC_whole7dpf_HM3_S11_L003_R1_001.fastq ._GLDC_whole7dpf_HM3_S11_L003_R2_001.fastq ._GLDC_whole7dpf_HM3_S11_L004_R1_001.fastq GLDC_whole7dpf_HM1_S9_L001_R1_001.fastq GLDC_whole7dpf_HM1_S9_L001_R2_001.fastq GLDC_whole7dpf_HM1_S9_L002_R1_001.fastq GLDC_whole7dpf_HM1_S9_L002_R2_001.fastq GLDC_whole7dpf_HM1_S9_L003_R1_001.fastq GLDC_whole7dpf_HM1_S9_L003_R2_001.fastq GLDC_whole7dpf_HM1_S9_L004_R1_001.fastq GLDC_whole7dpf_HM1_S9_L004_R2_001.fastq GLDC_whole7dpf_HM2_S10_L001_R1_001.fastq GLDC_whole7dpf_HM2_S10_L001_R2_001.fastq GLDC_whole7dpf_HM2_S10_L002_R1_001.fastq GLDC_whole7dpf_HM2_S10_L002_R2_001.fastq GLDC_whole7dpf_HM2_S10_L003_R1_001.fastq GLDC_whole7dpf_HM2_S10_L003_R2_001.fastq GLDC_whole7dpf_HM2_S10_L004_R2_001.fastq GLDC_whole7dpf_HM3_S11_L001_R1_001.fastq GLDC_whole7dpf_HM3_S11_L001_R2_001.fastq GLDC_whole7dpf_HM3_S11_L002_R1_001.fastq GLDC_whole7dpf_HM3_S11_L003_R1_001.fastq GLDC_whole7dpf_HM3_S11_L003_R2_001.fastq GLDC_whole7dpf_HM3_S11_L004_R1_001.fastq,fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq,497952.0,3744.0,HM.zip.tar,,A:121192;C:118254;G:118009;T:121857;N:18640,,,,,121192,118254,118009,121857,18640,SRX4675364,SRS3769145,SRA772670,CRCHUM|NEUROSCIENCES,CRCHUM,2,0.91422,0.92397,0.0656,0.06743,0.97528,0.97555,0.47174,0.47422,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,trueseq,bulk,unknown,unknown,,Canada,2021-02-25,Larval,Larval,Whole Organism,All anatomical structures
52147,SRR8953735,SRX5733574,SRS4646934,SRP193814,PRJNA535392,Transcriptome analysis and identification of insecticide metabolism related genes post exposure to insecticide in Sitobion avenae,PRJNA535392,Other,Aphids causes serious lost in the production of wheat. Grain aphid  Sitobion avenae  is the dominant species of aphid in all wheat region of China  and this species is also considered resistant to a variety of insecticides  including imidacloprid and chlorpyrifos. However  the resistance and metabolize mechanism of insecticides for S. avenae is still unclear. This study employed transcriptome analysis to compare the expression patterns of stress response genes under imidacloprid and chlorpyrifos for 15min  3h and 36h'exposure. post compared insecticide treated samples of different time duration to control sample  we obtained 60 to 2267 Differential Express Unigenes DEUs  among these DEUs  31 790 unigenes was classified into 66 786 categories of GO function group and 24 to 760 DEUs could be mapped into 54 to 268 KEGG pathways. The expression of DEUs related to insecticide metabolism related genes were analyzed. In the insecticide metabolism related genes  cuticle protein is the largest group in DEUs  and the second largest is ABC transporter. Our study will facilitate molecular research on insecticide resistance in S. avenae  as well as in other wheat aphids.,,,20 miR 430 /  embryos at shield stage were collected for RNA seq analsysis,MiR 430 / ,M6,,strain:AB|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:Hong Kong|age:6 hpf stage:shield stage|sex:pooled male and female|tissue:embyos|phenotype:MiR 430 / |sample type:embryos|treatment:miR 430 was deleted by TALENs|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome analysis and identification of insecticidemetabolism related genes post exposure to insecticide in Sitobion avenae,CH36h 3,CH36h 3,CH36h 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP193814,,,CH36h_3_S108_L004_R1_001.fastq.gz CH36h_3_S108_L004_R2_001.fastq.gz,fastq fastq,7952910884.0,26334142.0,CH36h 3 S108 L004 R1 001.fastq.gz,0:151 1:151,A:2299365607;C:1663413532;G:1659057469;T:2331018176;N:56100,151,151,,,2299365607,1663413532,1659057469,2331018176,56100,SRX5733574,SRS4646934,SRA879464,Institute of Plant Protection and Agro-Products Safety|Anhui Academy of Agricultural Sciences,Institute of Plant Protection and Agro-Products Safety,2,7e-05,6e-05,1e-05,2e-05,0.99987,0.99989,0.44444,0.66666,151,151,T,T,mates < 9% mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-24,Gastrula,Embryo,Whole Organism,All anatomical structures
52148,SRR8953736,SRX5733573,SRS4646933,SRP193814,PRJNA535392,Transcriptome analysis and identification of insecticide metabolism related genes post exposure to insecticide in Sitobion avenae,PRJNA535392,Other,Aphids causes serious lost in the production of wheat. Grain aphid  Sitobion avenae  is the dominant species of aphid in all wheat region of China  and this species is also considered resistant to a variety of insecticides  including imidacloprid and chlorpyrifos. However  the resistance and metabolize mechanism of insecticides for S. avenae is still unclear. This study employed transcriptome analysis to compare the expression patterns of stress response genes under imidacloprid and chlorpyrifos for 15min  3h and 36h'exposure. post compared insecticide treated samples of different time duration to control sample  we obtained 60 to 2267 Differential Express Unigenes DEUs  among these DEUs  31 790 unigenes was classified into 66 786 categories of GO function group and 24 to 760 DEUs could be mapped into 54 to 268 KEGG pathways. The expression of DEUs related to insecticide metabolism related genes were analyzed. In the insecticide metabolism related genes  cuticle protein is the largest group in DEUs  and the second largest is ABC transporter. Our study will facilitate molecular research on insecticide resistance in S. avenae  as well as in other wheat aphids.,,,20 WT embryos at shield stage were collected for RNA seq analsysis,WT,W6,,strain:AB|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:Hong Kong|age:6 hpf stage:shield stage|sex:pooled male and female|tissue:embyos|phenotype:WT|sample type:embryos|treatment:Control|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome analysis and identification of insecticidemetabolism related genes post exposure to insecticide in Sitobion avenae,CH36h 2,CH36h 2,CH36h 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP193814,,,CH36h_2_S107_L004_R1_001.fastq.gz CH36h_2_S107_L004_R2_001.fastq.gz,fastq fastq,7678237958.0,25424629.0,CH36h 2 S107 L004 R1 001.fastq.gz,0:151 1:151,A:2234219717;C:1589496206;G:1588910161;T:2265558614;N:53260,151,151,,,2234219717,1589496206,1588910161,2265558614,53260,SRX5733573,SRS4646933,SRA879464,Institute of Plant Protection and Agro-Products Safety|Anhui Academy of Agricultural Sciences,Institute of Plant Protection and Agro-Products Safety,2,3e-05,2e-05,0.0,0.0,0.99993,0.99995,0.5,1.0,151,151,T,T,mates < 9% mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-24,Gastrula,Embryo,Whole Organism,All anatomical structures
52149,SRR8953738,SRX5733571,SRS4646935,SRP193814,PRJNA535392,Transcriptome analysis and identification of insecticide metabolism related genes post exposure to insecticide in Sitobion avenae,PRJNA535392,Other,Aphids causes serious lost in the production of wheat. Grain aphid  Sitobion avenae  is the dominant species of aphid in all wheat region of China  and this species is also considered resistant to a variety of insecticides  including imidacloprid and chlorpyrifos. However  the resistance and metabolize mechanism of insecticides for S. avenae is still unclear. This study employed transcriptome analysis to compare the expression patterns of stress response genes under imidacloprid and chlorpyrifos for 15min  3h and 36h'exposure. post compared insecticide treated samples of different time duration to control sample  we obtained 60 to 2267 Differential Express Unigenes DEUs  among these DEUs  31 790 unigenes was classified into 66 786 categories of GO function group and 24 to 760 DEUs could be mapped into 54 to 268 KEGG pathways. The expression of DEUs related to insecticide metabolism related genes were analyzed. In the insecticide metabolism related genes  cuticle protein is the largest group in DEUs  and the second largest is ABC transporter. Our study will facilitate molecular research on insecticide resistance in S. avenae  as well as in other wheat aphids.,,,miR 430 /  embryos were injected with miR 430 rescued  20 embryos at shield stage were collected for RNA seq analsysis,Rescued,R6,,strain:AB|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:Hong Kong|age:6 hpf stage:shield stage|sex:pooled male and female|tissue:embyos|phenotype:MiR 430 / |sample type:embryos|treatment:Rescued by miR 430 injection|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptome analysis and identification of insecticidemetabolism related genes post exposure to insecticide in Sitobion avenae,IM15min 1,IM15min 1,IM15min 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP193814,,,IM15min_1_S91_L004_R1_001.fastq.gz IM15min_1_S91_L004_R2_001.fastq.gz,fastq fastq,5908953744.0,19566072.0,IM15min 1 S91 L004 R1 001.fastq.gz,0:151 1:151,A:1720180168;C:1223518369;G:1218504877;T:1746709378;N:40952,151,151,,,1720180168,1223518369,1218504877,1746709378,40952,SRX5733571,SRS4646935,SRA879464,Institute of Plant Protection and Agro-Products Safety|Anhui Academy of Agricultural Sciences,Institute of Plant Protection and Agro-Products Safety,2,0.0,2e-05,0.0,0.0,1.0,0.99995,,0.33333,151,151,T,T,mates < 9% mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-25,Gastrula,Embryo,Whole Organism,All anatomical structures
53815,SRR10058763,SRX6792672,SRS5347942,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Pergo1,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Pergo1|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Pergo1,Pergo1,Pergo1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Pergo1_1.fq.gz Pergo1_2.fq.gz,fastq fastq,9002685900.0,30008953.0,Pergo1 1.fq.gz,0:150 1:150,A:2284233380;C:2226407977;G:2221649755;T:2270297656;N:97132,150,150,,,2284233380,2226407977,2221649755,2270297656,97132,SRX6792672,SRS5347942,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96714,0.96683,0.06127,0.06067,0.65234,0.65228,0.48061,0.48752,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53816,SRR10058764,SRX6792671,SRS5342237,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,SKF 3,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:SKF 3|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,SKF 3,SKF 3,SKF 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,SKF-3_1.fq.gz SKF-3_2.fq.gz,fastq fastq,14661769500.0,48872565.0,SKF 3 1.fq.gz,0:150 1:150,A:3937397776;C:3334662769;G:3380870222;T:4008782272;N:56461,150,150,,,3937397776,3334662769,3380870222,4008782272,56461,SRX6792671,SRS5342237,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.90936,0.91169,0.31821,0.31486,0.67969,0.6776,0.48901,0.51959,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53817,SRR10058765,SRX6792670,SRS5347941,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,SKF 2,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:SKF 2|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,SKF 2,SKF 2,SKF 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,SKF-2_1.fq.gz SKF-2_2.fq.gz,fastq fastq,8584608600.0,28615362.0,SKF 2 1.fq.gz,0:150 1:150,A:2190848961;C:2110188590;G:2105319611;T:2178159388;N:92050,150,150,,,2190848961,2110188590,2105319611,2178159388,92050,SRX6792670,SRS5347941,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96298,0.96428,0.07022,0.06999,0.66586,0.66576,0.49629,0.49865,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53818,SRR10058766,SRX6792669,SRS5347940,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,SKF 1,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:SKF 1|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,SKF 1,SKF 1,SKF 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,SKF-1_1.fq.gz SKF-1_2.fq.gz,fastq fastq,7471998900.0,24906663.0,SKF 1 1.fq.gz,0:150 1:150,A:1880536881;C:1862845911;G:1858908452;T:1869637439;N:70217,150,150,,,1880536881,1862845911,1858908452,1869637439,70217,SRX6792669,SRS5347940,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96901,0.96871,0.05532,0.05544,0.65904,0.65894,0.48946,0.48751,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53819,SRR10058767,SRX6792668,SRS5347939,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Quin3,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Quin3|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Quin3,Quin3,Quin3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Quin3_1.fq.gz Quin3_2.fq.gz,fastq fastq,14645873100.0,48819577.0,Quin3 1.fq.gz,0:150 1:150,A:3986492509;C:3283441590;G:3316949430;T:4058929665;N:59906,150,150,,,3986492509,3283441590,3316949430,4058929665,59906,SRX6792668,SRS5347939,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.9071,0.90804,0.3399,0.33683,0.67758,0.67724,0.51087,0.49518,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53820,SRR10058768,SRX6792667,SRS5347938,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Quin2,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Quin2|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Quin2,Quin2,Quin2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Quin2_1.fq.gz Quin2_2.fq.gz,fastq fastq,9289020900.0,30963403.0,Quin2 1.fq.gz,0:150 1:150,A:2348828792;C:2301471992;G:2299623749;T:2338994402;N:101965,150,150,,,2348828792,2301471992,2299623749,2338994402,101965,SRX6792667,SRS5347938,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96648,0.96637,0.06071,0.06073,0.66446,0.66436,0.48911,0.47686,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53821,SRR10058769,SRX6792666,SRS5347937,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Quin1,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Quin1|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Quin1,Quin1,Quin1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Quin1_1.fq.gz Quin1_2.fq.gz,fastq fastq,8755971600.0,29186572.0,Quin1 1.fq.gz,0:150 1:150,A:2209816345;C:2178196217;G:2171101510;T:2196773777;N:83751,150,150,,,2209816345,2178196217,2171101510,2196773777,83751,SRX6792666,SRS5347937,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96841,0.96756,0.05302,0.05335,0.66074,0.66078,0.49161,0.49384,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53822,SRR10058770,SRX6792665,SRS5347936,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Ctrl3,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Ctrl3|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Ctrl3,Ctrl3,Ctrl3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Ctrl3_1.fq.gz Ctrl3_2.fq.gz,fastq fastq,13333115100.0,44443717.0,Ctrl3 1.fq.gz,0:150 1:150,A:3663866868;C:2958056073;G:2996299917;T:3714839596;N:52646,150,150,,,3663866868,2958056073,2996299917,3714839596,52646,SRX6792665,SRS5347936,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.9054,0.90452,0.34186,0.33625,0.68688,0.68901,0.51459,0.52947,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53823,SRR10058771,SRX6792664,SRS5347935,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Pergo3,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Pergo3|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Pergo3,Pergo3,Pergo3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Pergo3_1.fq.gz Pergo3_2.fq.gz,fastq fastq,13378423200.0,44594744.0,Pergo3 1.fq.gz,0:150 1:150,A:3687711524;C:2955636415;G:2993079641;T:3741929479;N:66141,150,150,,,3687711524,2955636415,2993079641,3741929479,66141,SRX6792664,SRS5347935,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.90395,0.90344,0.35671,0.35076,0.67689,0.67872,0.49222,0.50635,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53824,SRR10058772,SRX6792663,SRS5347934,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Pergo2,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Pergo2|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Pergo2,Pergo2,Pergo2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Pergo2_1.fq.gz Pergo2_2.fq.gz,fastq fastq,9278075700.0,30926919.0,Pergo2 1.fq.gz,0:150 1:150,A:2361083573;C:2288684725;G:2285485113;T:2342723684;N:98605,150,150,,,2361083573,2288684725,2285485113,2342723684,98605,SRX6792663,SRS5347934,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96699,0.9663,0.0592,0.05931,0.66772,0.66821,0.49194,0.48092,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53825,SRR10058773,SRX6792662,SRS5347933,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Ctrl2,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Ctrl2|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Ctrl2,Ctrl2,Ctrl2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Ctrl2_1.fq.gz Ctrl2_2.fq.gz,fastq fastq,7872537000.0,26241790.0,Ctrl2 1.fq.gz,0:150 1:150,A:1997008540;C:1946908516;G:1946100439;T:1982448081;N:71424,150,150,,,1997008540,1946908516,1946100439,1982448081,71424,SRX6792662,SRS5347933,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96637,0.96595,0.06199,0.06138,0.65476,0.65608,0.48539,0.48386,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
53826,SRR10058774,SRX6792661,SRS5347932,SRP220275,PRJNA563535,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,PRJNA563535,Other,Dopamine is critical for neural circuit modulation and also affects behavior. Dopamine agonists have been used to treat multiple neurological disorders and lead to different clinical outcomes. However  their effects on behavior and the underlying molecular mechanisms are unclear. In this study  we used zebrafish as a model to study the effects of the dopamine agonists SKF 38393  quinpirole  and pergolide on behavior and systematically analyzed their effects on molecular events with highresolution transcriptome analysis.,,,,,Ctrl1,,strain:not collected|age:7 days|sex:pooled male and female|tissue:whole mount|treatment:Ctrl1|BioSampleModel:Model organism or animal,,,,,,,,,Dopamine Agonists Have Differential Effects on Molecular Targets and Behavior,Ctrl1,Ctrl1,Ctrl1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP220275,,,Ctrl1_1.fq.gz Ctrl1_2.fq.gz,fastq fastq,9558337800.0,31861126.0,Ctrl1 1.fq.gz,0:150 1:150,A:2446095030;C:2346945383;G:2339486455;T:2425720301;N:90631,150,150,,,2446095030,2346945383,2339486455,2425720301,90631,SRX6792661,SRS5347932,SRA954969,Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and,Nantong University,2,0.96298,0.96276,0.07291,0.07308,0.67026,0.67115,0.49744,0.49884,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2019-09-03,Larval,Larval,Whole Organism,All anatomical structures
60663,SRR12474622,SRX8968760,SRS7224497,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome Satb2 Momix BR3,RNAseq Dome Satb2 Momix Rep3,,strain:TU|isolate:Satb2 MO|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome Satb2 Momix Rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome Satb2 Momix BR3,RNAseq Dome Satb2 Momix Rep3,RNAseq Dome Satb2 Momix Rep3,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_Satb2_Momix_Rep3_1.fastq.gz RNAseq_Dome_Satb2_Momix_Rep3_2.fastq.gz,fastq fastq,3361844590.0,16642795.0,RNAseq Dome Satb2 Momix Rep3 1.fastq.gz,0:101 1:101,A:869743850;C:802603242;G:821530754;T:867100787;N:865957,101,101,,,869743850,802603242,821530754,867100787,865957,SRX8968760,SRS7224497,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.91855,0.92581,0.09094,0.09187,0.73101,0.73048,0.50388,0.50453,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60664,SRR12474623,SRX8968759,SRS7224496,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome Satb2 Momix BR2,RNAseq Dome Satb2 Momix Rep2,,strain:TU|isolate:Satb2 MO|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome Satb2 Momix Rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome Satb2 Momix BR2,RNAseq Dome Satb2 Momix Rep2,RNAseq Dome Satb2 Momix Rep2,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_Satb2_Momix_Rep2_1.fastq.gz RNAseq_Dome_Satb2_Momix_Rep2_2.fastq.gz,fastq fastq,2934600046.0,14527723.0,RNAseq Dome Satb2 Momix Rep2 1.fastq.gz,0:101 1:101,A:765684715;C:691595256;G:707084290;T:769474179;N:761606,101,101,,,765684715,691595256,707084290,769474179,761606,SRX8968759,SRS7224496,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.92974,0.93883,0.07845,0.0785,0.72592,0.72671,0.4882,0.48052,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60665,SRR12474624,SRX8968758,SRS7224495,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome Satb2 Momix BR1,RNAseq Dome Satb2 Momix Rep1,,strain:TU|isolate:Satb2 MO|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome Satb2 Momix Rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome Satb2 Momix BR1,RNAseq Dome Satb2 Momix Rep1,RNAseq Dome Satb2 Momix Rep1,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_Satb2_Momix_Rep1_1.fastq.gz RNAseq_Dome_Satb2_Momix_Rep1_2.fastq.gz,fastq fastq,3277138112.0,16223456.0,RNAseq Dome Satb2 Momix Rep1 1.fastq.gz,0:101 1:101,A:872778487;C:759805575;G:793431784;T:850272274;N:849992,101,101,,,872778487,759805575,793431784,850272274,849992,SRX8968758,SRS7224495,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.86712,0.87683,0.07613,0.07571,0.72861,0.72851,0.48821,0.4932,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60666,SRR12474625,SRX8968757,SRS7224494,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome SATB2OE BR3,RNAseq Dome SATB2OE Rep3,,strain:TU|isolate:Satb2 OE|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome SATB2OE Rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome SATB2OE BR3,RNAseq Dome SATB2OE Rep3,RNAseq Dome SATB2OE Rep3,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_SATB2OE_Rep3_1.fastq.gz RNAseq_Dome_SATB2OE_Rep3_2.fastq.gz,fastq fastq,3932925658.0,19469929.0,RNAseq Dome SATB2OE Rep3 1.fastq.gz,0:101 1:101,A:969363674;C:989972200;G:1028727316;T:943842306;N:1020162,101,101,,,969363674,989972200,1028727316,943842306,1020162,SRX8968757,SRS7224494,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.87672,0.88348,0.07881,0.08241,0.73598,0.73799,0.48902,0.48807,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60668,SRR12474627,SRX8968755,SRS7224492,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome SATB2OE BR2,RNAseq Dome SATB2OE Rep2,,strain:TU|isolate:Satb2 OE|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome SATB2OE Rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome SATB2OE BR2,RNAseq Dome SATB2OE Rep2,RNAseq Dome SATB2OE Rep2,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_SATB2OE_Rep2_1.fastq.gz RNAseq_Dome_SATB2OE_Rep2_2.fastq.gz,fastq fastq,5012566774.0,24814687.0,RNAseq Dome SATB2OE Rep2 1.fastq.gz,0:101 1:101,A:1329690083;C:1162466478;G:1194766639;T:1324334003;N:1309571,101,101,,,1329690083,1162466478,1194766639,1324334003,1309571,SRX8968755,SRS7224492,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.90779,0.91925,0.08997,0.09054,0.73245,0.73285,0.50143,0.50253,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60669,SRR12474628,SRX8968754,SRS7224491,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome SATB2OE BR1,RNAseq Dome SATB2OE Rep1,,strain:TU|isolate:Satb2 OE|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome SATB2OE Rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome SATB2OE BR1,RNAseq Dome SATB2OE Rep1,RNAseq Dome SATB2OE Rep1,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_SATB2OE_Rep1_1.fastq.gz RNAseq_Dome_SATB2OE_Rep1_2.fastq.gz,fastq fastq,5667842654.0,28058627.0,RNAseq Dome SATB2OE Rep1 1.fastq.gz,0:101 1:101,A:1470862858;C:1348889787;G:1384691739;T:1461925766;N:1472504,101,101,,,1470862858,1348889787,1384691739,1461925766,1472504,SRX8968754,SRS7224491,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.8923,0.89975,0.09014,0.09148,0.72961,0.73018,0.49697,0.49398,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60670,SRR12474629,SRX8968753,SRS7224490,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome Ctrl BR3,RNAseq Dome Ctrl Rep3,,strain:TU|isolate:wild type|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome Ctrl Rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome Ctrl BR3,RNAseq Dome Ctrl Rep3,RNAseq Dome Ctrl Rep3,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_Ctrl_Rep3_1.fastq.gz RNAseq_Dome_Ctrl_Rep3_2.fastq.gz,fastq fastq,3619381056.0,17917728.0,RNAseq Dome Ctrl Rep3 1.fastq.gz,0:101 1:101,A:977482131;C:821300041;G:834249032;T:985397638;N:952214,101,101,,,977482131,821300041,834249032,985397638,952214,SRX8968753,SRS7224490,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.91632,0.92433,0.09683,0.09564,0.73537,0.73799,0.49923,0.50181,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60671,SRR12474630,SRX8968752,SRS7224489,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome Ctrl BR2,RNAseq Dome Ctrl Rep2,,strain:TU|isolate:wild type|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome Ctrl Rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome Ctrl BR2,RNAseq Dome Ctrl Rep2,RNAseq Dome Ctrl Rep2,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_Ctrl_Rep2_1.fastq.gz RNAseq_Dome_Ctrl_Rep2_2.fastq.gz,fastq fastq,2882618780.0,14270390.0,RNAseq Dome Ctrl Rep2 1.fastq.gz,0:101 1:101,A:736686360;C:696407092;G:718043942;T:730729062;N:752324,101,101,,,736686360,696407092,718043942,730729062,752324,SRX8968752,SRS7224489,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.92367,0.92987,0.07794,0.07957,0.73478,0.73661,0.47535,0.48496,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
60672,SRR12474631,SRX8968751,SRS7224488,SRP278034,PRJNA657343,Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development,PRJNA657343,Other,Comprehensive integration of transcriptome  genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program.,,,,RNAseq Dome Ctrl BR1,RNAseq Dome Ctrl Rep1,,strain:TU|isolate:wild type|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome Ctrl Rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq Dome Ctrl BR1,RNAseq Dome Ctrl Rep1,RNAseq Dome Ctrl Rep1,poly A isolation,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP278034,,,RNAseq_Dome_Ctrl_Rep1_1.fastq.gz RNAseq_Dome_Ctrl_Rep1_2.fastq.gz,fastq fastq,3066868232.0,15182516.0,RNAseq Dome Ctrl Rep1 1.fastq.gz,0:101 1:101,A:814702248;C:724322109;G:749291283;T:777765989;N:786603,101,101,,,814702248,724322109,749291283,777765989,786603,SRX8968751,SRS7224488,SRA1114017,IISER-PUNE|biology,IISER-PUNE,2,0.84929,0.85565,0.07483,0.07587,0.74057,0.74081,0.4888,0.49236,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,India,2020-08-19,Blastula,Embryo,Whole Organism,All anatomical structures
62470,SRR13203215,SRX9636468,SRS7836318,SRP296520,PRJNA682774,starvation induced hepatic steatosis,PRJNA682774,Other,A Model Construction of Starvation Induces Hepatic Steatosis and Transcriptome Analysis in Zebrafish larvae,,,,,fs,,strain:AB line|isolate:F0|breed:animals|cultivar:fish|ecotype:normal|age:5 dpf|dev stage:larval stage|sex:n1|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,starvation induced heaptic steatosis,MJ20200831181,MJ20200831181,normal fed vs fast,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP296520,,,f1.R1.fastq.gz f1.R2.fastq.gz f2.R1.fastq.gz f2.R2.fastq.gz f3.R1.fastq.gz f3.R2.fastq.gz s1.R1.fastq.gz s1.R2.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,29129211888.0,96454344.0,f1.R1.fastq.gz,0:151 1:151,A:7606018564;C:6909639030;G:7057191016;T:7555822038;N:541240,151,151,,,7606018564,6909639030,7057191016,7555822038,541240,SRX9636468,SRS7836318,SRA1167521,Southwest University|College of Fisheries,Southwest University,2,0.94626,0.94685,0.0543,0.05418,0.70609,0.70457,0.53227,0.53524,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-12-06,Larval,Larval,Whole Organism,All anatomical structures
62475,SRR13221789,SRX9654237,SRS7853434,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,LKO2,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:LAL KO|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,LKO2,LKO2,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,LKO2_R1.fastq.gz LKO2_R2.fastq.gz,fastq fastq,6036272700.0,20120909.0,LKO2 R1.fastq.gz,0:150 1:150,A:1601206536;C:1418087701;G:1426655325;T:1590179237;N:143901,150,150,,,1601206536,1418087701,1426655325,1590179237,143901,SRX9654237,SRS7853434,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.94664,0.94241,0.07651,0.07615,0.6608,0.66567,0.45863,0.4577,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
62476,SRR13221790,SRX9654236,SRS7853433,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,LKO1,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:lal knockout|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,LKO1,LKO1,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,LKO1_R1.fastq.gz LKO1_R2.fastq.gz,fastq fastq,6640716000.0,22135720.0,LKO1 R1.fastq.gz,0:150 1:150,A:1756949709;C:1564569001;G:1580752460;T:1738424371;N:20459,150,150,,,1756949709,1564569001,1580752460,1738424371,20459,SRX9654236,SRS7853433,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.95033,0.94458,0.07707,0.07686,0.65835,0.6591,0.47143,0.47082,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
62477,SRR13221791,SRX9654235,SRS7853432,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,WT2L,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:Wildtype|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,WT2L,WT2L,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,WT2L_R1.fastq.gz WT2L_R2.fastq.gz,fastq fastq,6956682300.0,23188941.0,WT2L R1.fastq.gz,0:150 1:150,A:1840614101;C:1638232524;G:1657443860;T:1820370318;N:21497,150,150,,,1840614101,1638232524,1657443860,1820370318,21497,SRX9654235,SRS7853432,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.95135,0.94558,0.07516,0.07485,0.66403,0.66505,0.47807,0.47628,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
62478,SRR13221792,SRX9654234,SRS7853431,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,WT1L,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:WT|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,WT1L,WT1L,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,WT1L_R1.fastq.gz WT1L_R2.fastq.gz,fastq fastq,6656937600.0,22189792.0,WT1L R1.fastq.gz,0:150 1:150,A:1774798990;C:1555136438;G:1570885194;T:1756096008;N:20970,150,150,,,1774798990,1555136438,1570885194,1756096008,20970,SRX9654234,SRS7853431,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.94852,0.94252,0.09019,0.0895,0.65374,0.6546,0.46386,0.46519,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
62479,SRR13221793,SRX9654233,SRS7853430,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,AKO2,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:Atgl KO|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,AKO2,AKO2,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,AKO2_R1.fastq.gz AKO2_R2.fastq.gz,fastq fastq,7159005600.0,23863352.0,AKO2 R1.fastq.gz,0:150 1:150,A:1899574066;C:1686063701;G:1700099039;T:1873246610;N:22184,150,150,,,1899574066,1686063701,1700099039,1873246610,22184,SRX9654233,SRS7853430,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.94503,0.94035,0.07309,0.07271,0.66699,0.66691,0.49612,0.50397,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
62480,SRR13221794,SRX9654232,SRS7853429,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,AKO1,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:atgl knockout|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,AKO1,AKO1,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,AKO1_R1.fastq.gz AKO1_R2.fastq.gz,fastq fastq,6731721000.0,22439070.0,AKO1 R1.fastq.gz,0:150 1:150,A:1745882460;C:1610945656;G:1625370653;T:1749501333;N:20898,150,150,,,1745882460,1610945656,1625370653,1749501333,20898,SRX9654232,SRS7853429,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.93222,0.93219,0.02488,0.02484,0.71652,0.71612,0.47921,0.47343,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
62481,SRR13221795,SRX9654231,SRS7853428,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,WT2,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:wildtype|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,WT2,WT2,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,WT2_R1.fastq.gz WT2_R2.fastq.gz,fastq fastq,6119265600.0,20397552.0,WT2 R1.fastq.gz,0:150 1:150,A:1619238473;C:1443680669;G:1457083041;T:1599244276;N:19141,150,150,,,1619238473,1443680669,1457083041,1599244276,19141,SRX9654231,SRS7853428,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.94166,0.93671,0.06976,0.06929,0.68635,0.68807,0.49396,0.49711,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
62482,SRR13221796,SRX9654230,SRS7853427,SRP297176,PRJNA683669,Transcriptional regulation of AKO and LKO in zebrafish.,PRJNA683669,Other,The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish.,,,,,WT1,,breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:wt|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio,WT1,WT1,Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads  the remaining clean reads were assembled and mapped to the zebrafish reference genome.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP297176,,,WT1_R1.fastq.gz WT1_R2.fastq.gz,fastq fastq,7607982300.0,25359941.0,WT1 R1.fastq.gz,0:150 1:150,A:1998356357;C:1800668862;G:1820187726;T:1988746210;N:23145,150,150,,,1998356357,1800668862,1820187726,1988746210,23145,SRX9654230,SRS7853427,SRA1169092,"LANEH|School of Life Sciences, East China Normal Univers",LANEH,2,0.94407,0.93934,0.06239,0.06217,0.69404,0.69522,0.53015,0.52721,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2020-12-09,Adult,Adult,Whole Organism,All anatomical structures
67035,SRR17000960,SRX13191218,SRS11119340,SRP347209,PRJNA782551,Transcriptome profiling of environmental relevant concentration 22 ng/L of nano Palladium on Danio rerio,PRJNA782551,Other,The effects of nano palladium 22 ng per L in zebrafish  Danio rerio was determined using transcriptome sequencing. The purity of mRNA from the nano Pd exposed fishes were checked and the processed reads were mapped with the reference genome of Danio rerio. Around 66612 genes were expressed in Treatment I with respect to the total reads. Based on the genes expressed  the comparison of Control vs Treatment I observed of 2738 genes that were significantly expressed with 819 up regulated and 1919 down regulated genes. The up regulation and down regulation of the genes were evident that the nano Pd can affect the physiological and endocrine functions of zebrafish.,,,,,BUANNPd22ng,,strain:AB strain Wild Type|age:6 mpf|dev stage:adult|sex:male|tissue:Whole fish tissue|collection date:2021 03 06|store cond:Liquid nitrogen|treatment:22 ng/L nano Palladium|BioSampleModel:Model organism or animal,,,,,,,,,22 ng nano Pd treated zebrafish,nano Pd22ng,nano Pd22ng,Palladium nanoparticles Pd NPs have been the reliable substitutes as conventional catalysts for its high efficiency and conversion of CO  hydrocarbons  and NO into less harmful CO2  water and nitrogen. Due to surface abrasion of converters  Pd as ultrafine/nanoparticles are liberated into the environment causing possible health effects. Also  Pd leaches to the aquatic system through heavy precipitation and runoff. Here  we aimed to profile the transcriptome of Danio rerio exposed to nano palladium at xxx ng/L environmental concentration. 500 ng of total RNA of 22 ng/L nano Pd fishes was isolated and the enriched mRNAs were reverse transcribed to form cDNA. The concentrations above 2 ng/L were used for the transcriptome analysis with the reference genome. Around 66612 genes were expressed in 22 ng/L with respect to the total reads. The comparison of Control vs Treatment I observed of 2738 DEGs  with 819 up regulated and 1919 down regulated genes. The up regulation and down regulation of the genes were evident that the nano Pd affects the physiological and endocrine functions of zebrafish at higher concentrations.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 1000,,SRP347209,,,Treated1_R1.fastq Treated1_R2.fastq,fastq fastq,4314727500.0,14382425.0,Treated1 R1.fastq,0:150 1:150,A:1135864123;C:1026590561;G:1043810842;T:1108320852;N:141122,150,150,,,1135864123,1026590561,1043810842,1108320852,141122,SRX13191218,SRS11119340,SRA1332819,ANILA P ASHOKAN|BHARATHIAR UNIVERSITY ZOOLOGY DEPARTEMNT,ANILA P ASHOKAN,2,0.8989,0.90255,0.06353,0.06414,0.76142,0.76658,0.51971,0.5185,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Unknown,2021-11-22,Adult,Adult,Whole Organism,All anatomical structures
68195,SRR17658724,SRX13826757,SRS11705915,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,C25d  ZHT,,strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:25dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,C25D,C25D,WT zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20541691800.0,68472306.0,C25D.7z,0:150 1:150,A:5668751376;C:4596699177;G:4545478495;T:5730382931;N:379821,150,150,,,5668751376,4596699177,4545478495,5730382931,379821,SRX13826757,SRS11705915,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.84223,0.84372,0.07155,0.07222,0.70189,0.70321,0.47909,0.495,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-07,Larval,Larval,Whole Organism,All anatomical structures
68196,SRR17658725,SRX13826756,SRS11705914,SRP355720,PRJNA798511,Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation,PRJNA798511,Other,heat treated zebrafish,,,,,T60d  ZHT,,strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal,,,,,,,,,RNAq of zebrafish,T60D,T60D,heat treated zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP355720,,loader:fastq load.py,,,20334742200.0,67782474.0,T60D.7z,0:150 1:150,A:5482201207;C:4682998764;G:4635775004;T:5533378494;N:388731,150,150,,,5482201207,4682998764,4635775004,5533378494,388731,SRX13826756,SRS11705914,SRA1358616,Hunan University of Science and Technology|School of Life and Health Sciences,Hunan University of Science and Technology,2,0.94378,0.94515,0.04989,0.04997,0.69848,0.69978,0.50317,0.5041,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-12-09,Juvenile,Juvenile,Whole Organism,All anatomical structures