rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 9831,ERR4029236,ERX4030552,ERS4513990,ERP121186,PRJEB37848,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E-MTAB-8959,Transcriptome Analysis,The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,,Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,ZF Sk 1,SAMEA6786310,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences",ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786310|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF Sk 1|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:skin|sample name:E MTAB 8959:ZF Sk 1|scientific name:Danio rerio|sex:male,,,,,,,,,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E MTAB 8959:ZF Sk 1 p,ZF Sk 1 p,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,Experimental Factor: organism part:skin|Experimental Factor: organism:Danio rerio,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP121186,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,ZF-Sk-1_ATTACTCG-AGGCGAAG_R1_001.fastq.gz ZF-Sk-1_ATTACTCG-AGGCGAAG_R2_001.fastq.gz,fastq fastq,4614183504.0,18310252.0,E MTAB 8959:ZF Sk 1 ATTACTCG AGGCGAAG R,0:126 1:126,A:1263161349;C:1046676688;G:1038530310;T:1265433988;N:381169,126,126,,,1263161349,1046676688,1038530310,1265433988,381169,ERX4030552,ERS4513990,ERA2508028,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive","CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive",2,0.93462,0.93416,0.10434,0.10373,0.71254,0.7162,0.4722,0.46786,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Norway,2020-04-16,Adult,Adult,Multi-tissue,Multi-system 9832,ERR4029235,ERX4030551,ERS4513989,ERP121186,PRJEB37848,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E-MTAB-8959,Transcriptome Analysis,The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,,Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,ZF M 2,SAMEA6786309,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences",ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786309|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF M 2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:muscle|sample name:E MTAB 8959:ZF M 2|scientific name:Danio rerio|sex:male,,,,,,,,,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E MTAB 8959:ZF M 2 p,ZF M 2 p,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,Experimental Factor: organism part:muscle|Experimental Factor: organism:Danio rerio,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP121186,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,ZF-M-2_ATTACTCG-TAATCTTA_R2_001.fastq.gz ZF-M-2_ATTACTCG-TAATCTTA_R1_001.fastq.gz,fastq fastq,4318736184.0,17137842.0,E MTAB 8959:ZF M 2 ATTACTCG TAATCTTA R,0:126 1:126,A:1127118469;C:1038158146;G:1022013812;T:1130979521;N:466236,126,126,,,1127118469,1038158146,1022013812,1130979521,466236,ERX4030551,ERS4513989,ERA2508028,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive","CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive",2,0.97246,0.97334,0.03723,0.03642,0.8061,0.8058,0.55712,0.55957,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Norway,2020-04-16,Adult,Adult,Multi-tissue,Multi-system 9834,ERR4029233,ERX4030549,ERS4513987,ERP121186,PRJEB37848,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E-MTAB-8959,Transcriptome Analysis,The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,,Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,ZF H 1,SAMEA6786307,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences",ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786307|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF H 1|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:heart|sample name:E MTAB 8959:ZF H 1|scientific name:Danio rerio|sex:male,,,,,,,,,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E MTAB 8959:ZF H 1 p,ZF H 1 p,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,Experimental Factor: organism part:heart|Experimental Factor: organism:Danio rerio,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP121186,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,ZF-H-1_ATTACTCG-CAGGACGT_R2_001.fastq.gz ZF-H-1_ATTACTCG-CAGGACGT_R1_001.fastq.gz,fastq fastq,4423848660.0,17554955.0,E MTAB 8959:ZF H 1 ATTACTCG CAGGACGT R,0:126 1:126,A:1218639096;C:1001394110;G:990248385;T:1213102170;N:464899,126,126,,,1218639096,1001394110,990248385,1213102170,464899,ERX4030549,ERS4513987,ERA2508028,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive","CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive",2,0.95192,0.95388,0.08243,0.07997,0.75678,0.75915,0.50881,0.49325,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Norway,2020-04-16,Adult,Adult,Multi-tissue,Multi-system 9835,ERR4029232,ERX4030548,ERS4513986,ERP121186,PRJEB37848,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E-MTAB-8959,Transcriptome Analysis,The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,,Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,ZF Gi 2,SAMEA6786306,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences",ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786306|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF Gi 2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:gill|sample name:E MTAB 8959:ZF Gi 2|scientific name:Danio rerio|sex:male,,,,,,,,,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E MTAB 8959:ZF Gi 2 p,ZF Gi 2 p,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,Experimental Factor: organism part:gill|Experimental Factor: organism:Danio rerio,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP121186,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,ZF-Gi-2_TCCGGAGA-TATAGCCT_R2_001.fastq.gz ZF-Gi-2_TCCGGAGA-TATAGCCT_R1_001.fastq.gz,fastq fastq,5144739264.0,20415632.0,E MTAB 8959:ZF Gi 2 TCCGGAGA TATAGCCT R,0:126 1:126,A:1417436878;C:1153901826;G:1150711944;T:1422099770;N:588846,126,126,,,1417436878,1153901826,1150711944,1422099770,588846,ERX4030548,ERS4513986,ERA2508028,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive","CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive",2,0.9241,0.92549,0.09819,0.09689,0.69282,0.69441,0.50621,0.50455,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Norway,2020-04-16,Adult,Adult,Multi-tissue,Multi-system 9837,ERR4029230,ERX4030546,ERS4513984,ERP121186,PRJEB37848,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E-MTAB-8959,Transcriptome Analysis,The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,,Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,ZF E 2,SAMEA6786304,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences",ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786304|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF E 2|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:eye|sample name:E MTAB 8959:ZF E 2|scientific name:Danio rerio|sex:male,,,,,,,,,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E MTAB 8959:ZF E 2 p,ZF E 2 p,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,Experimental Factor: organism part:eye|Experimental Factor: organism:Danio rerio,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP121186,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,ZF-E-2_TCCGGAGA-ATAGAGGC_R2_001.fastq.gz ZF-E-2_TCCGGAGA-ATAGAGGC_R1_001.fastq.gz,fastq fastq,5023188324.0,19933287.0,E MTAB 8959:ZF E 2 TCCGGAGA ATAGAGGC R,0:126 1:126,A:1387107663;C:1131488657;G:1116622956;T:1387461813;N:507235,126,126,,,1387107663,1131488657,1116622956,1387461813,507235,ERX4030546,ERS4513984,ERA2508028,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive","CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive",2,0.94348,0.94343,0.12065,0.11931,0.68509,0.68848,0.51004,0.51626,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Norway,2020-04-16,Adult,Adult,Multi-tissue,Multi-system 9838,ERR4029229,ERX4030545,ERS4513983,ERP121186,PRJEB37848,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E-MTAB-8959,Transcriptome Analysis,The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation.,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,,Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,ZF B 1,SAMEA6786303,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences",ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786303|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF B 1|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:brain|sample name:E MTAB 8959:ZF B 1|scientific name:Danio rerio|sex:male,,,,,,,,,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,E MTAB 8959:ZF B 1 p,ZF B 1 p,RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific.,Experimental Factor: organism part:brain|Experimental Factor: organism:Danio rerio,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP121186,Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss,ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16,ZF-B-1_TCCGGAGA-CCTATCCT_R1_001.fastq.gz ZF-B-1_TCCGGAGA-CCTATCCT_R2_001.fastq.gz,fastq fastq,4581319932.0,18179841.0,E MTAB 8959:ZF B 1 TCCGGAGA CCTATCCT R,0:126 1:126,A:1290565823;C:1002821741;G:990971158;T:1296339062;N:622148,126,126,,,1290565823,1002821741,990971158,1296339062,622148,ERX4030545,ERS4513983,ERA2508028,"CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive","CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive",2,0.94092,0.94175,0.16309,0.16239,0.69351,0.69597,0.50407,0.5013,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Norway,2020-04-16,Adult,Adult,Multi-tissue,Multi-system 11138,ERR10034112,ERX9574516,ERS12562227,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Adult posterior tissue including caudal fin from Danio rerio,Drerio adult 5,SAMEA110464199,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464199|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE65|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE65|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:846 19258,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr65.1.fastq.gz S879Nr65.2.fastq.gz,fastq fastq,8113474926.0,40450096.0,ena RUN TAB 05 08 2022 14:25:08:846 19259,0:100.29 1:100.29,A:2219631013;C:1865987982;G:1932841486;T:2094905151;N:109294,100,100,,,2219631013,1865987982,1932841486,2094905151,109294,ERX9574516,ERS12562227,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.95479,0.95537,0.06841,0.06855,0.7195,0.72573,0.50694,0.51704,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Adult,Adult,Multi-tissue,Multi-system 11139,ERR10034111,ERX9574515,ERS12562226,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Adult posterior tissue including caudal fin from Danio rerio,Drerio adult 4,SAMEA110464198,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464198|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE64|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE64|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:846 19256,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr64.1.fastq.gz S879Nr64.2.fastq.gz,fastq fastq,8802988668.0,43612766.0,ena RUN TAB 05 08 2022 14:25:08:846 19257,0:100.92 1:100.92,A:2340528166;C:2077565381;G:2149703382;T:2235069101;N:122638,100,100,,,2340528166,2077565381,2149703382,2235069101,122638,ERX9574515,ERS12562226,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.96129,0.96078,0.05848,0.0573,0.72857,0.73152,0.51755,0.51293,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Adult,Adult,Multi-tissue,Multi-system 11140,ERR10034110,ERX9574514,ERS12562225,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Adult posterior tissue including caudal fin from Danio rerio,Drerio adult 3,SAMEA110464197,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464197|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE63|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE63|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:846 19254,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr63.1.fastq.gz S879Nr63.2.fastq.gz,fastq fastq,14206556196.0,70795830.0,ena RUN TAB 05 08 2022 14:25:08:846 19255,0:100.33 1:100.33,A:3869532222;C:3268435275;G:3367493228;T:3700901664;N:193807,100,100,,,3869532222,3268435275,3367493228,3700901664,193807,ERX9574514,ERS12562225,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.95612,0.95545,0.06896,0.06868,0.72271,0.72717,0.52736,0.5241,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Adult,Adult,Multi-tissue,Multi-system 11141,ERR10034109,ERX9574513,ERS12562224,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Adult posterior tissue including caudal fin from Danio rerio,Drerio adult 2,SAMEA110464196,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464196|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE62|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE62|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:845 19252,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr62.1.fastq.gz S879Nr62.2.fastq.gz,fastq fastq,12651629118.0,63063012.0,ena RUN TAB 05 08 2022 14:25:08:846 19253,0:100.31 1:100.31,A:3421673162;C:2936138781;G:3010862024;T:3282785988;N:169163,100,100,,,3421673162,2936138781,3010862024,3282785988,169163,ERX9574513,ERS12562224,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.9607,0.96017,0.06766,0.06784,0.72803,0.73109,0.52129,0.51739,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Adult,Adult,Multi-tissue,Multi-system 11142,ERR10034108,ERX9574512,ERS12562223,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Adult posterior tissue including caudal fin from Danio rerio,Drerio adult 1,SAMEA110464195,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464195|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE61|collected by:Marco Podobnik|collection date:2018 10 03|common name:zebrafish|dev stage:Adult|identified by:Marco Podobnik|sample name:SAMPLE61|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:845 19250,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr61.1.fastq.gz S879Nr61.2.fastq.gz,fastq fastq,11356103418.0,56579995.0,ena RUN TAB 05 08 2022 14:25:08:845 19251,0:100.35 1:100.35,A:3086637336;C:2630031473;G:2714955094;T:2924323148;N:156367,100,100,,,3086637336,2630031473,2714955094,2924323148,156367,ERX9574512,ERS12562223,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.95866,0.95853,0.06094,0.0606,0.72845,0.73164,0.52266,0.5244,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Adult,Adult,Multi-tissue,Multi-system 11143,ERR10034092,ERX9574496,ERS12562207,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Postmetamorphic posterior tissue including caudal fin from Danio rerio,Drerio postmetamorphic 5,SAMEA110464179,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464179|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE45|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE45|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:841 19218,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr45.1.fastq.gz S879Nr45.2.fastq.gz,fastq fastq,31205725028.0,155856846.0,ena RUN TAB 05 08 2022 14:25:08:841 19219,0:100.11 1:100.11,A:8165930827;C:7529482042;G:7775787815;T:7734109822;N:414522,100,100,,,8165930827,7529482042,7775787815,7734109822,414522,ERX9574496,ERS12562207,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.97305,0.97331,0.04336,0.04353,0.73728,0.74324,0.47532,0.4806,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Undetermined,Undetermined,Multi-tissue,Multi-system 11144,ERR10034091,ERX9574495,ERS12562206,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Postmetamorphic posterior tissue including caudal fin from Danio rerio,Drerio postmetamorphic 4,SAMEA110464178,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464178|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE44|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE44|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:841 19216,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr44.1.fastq.gz S879Nr44.2.fastq.gz,fastq fastq,12791868714.0,63868301.0,ena RUN TAB 05 08 2022 14:25:08:841 19217,0:100.14 1:100.14,A:3327645062;C:3095411506;G:3211023712;T:3157616450;N:171984,100,100,,,3327645062,3095411506,3211023712,3157616450,171984,ERX9574495,ERS12562206,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.97212,0.97067,0.04428,0.04445,0.74548,0.75114,0.47785,0.49354,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Undetermined,Undetermined,Multi-tissue,Multi-system 11145,ERR10034090,ERX9574494,ERS12562205,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Postmetamorphic posterior tissue including caudal fin from Danio rerio,Drerio postmetamorphic 3,SAMEA110464177,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464177|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE43|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE43|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:840 19214,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr43.1.fastq.gz S879Nr43.2.fastq.gz,fastq fastq,8220676412.0,40976395.0,ena RUN TAB 05 08 2022 14:25:08:840 19215,0:100.31 1:100.31,A:2152497687;C:1985765652;G:2020897890;T:2061403084;N:112099,100,100,,,2152497687,1985765652,2020897890,2061403084,112099,ERX9574494,ERS12562205,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.97126,0.97279,0.04717,0.04683,0.74223,0.74479,0.47471,0.49071,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Undetermined,Undetermined,Multi-tissue,Multi-system 11146,ERR10034089,ERX9574493,ERS12562204,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Postmetamorphic posterior tissue including caudal fin from Danio rerio,Drerio postmetamorphic 2,SAMEA110464176,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464176|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE42|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE42|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:840 19212,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr42.1.fastq.gz S879Nr42.2.fastq.gz,fastq fastq,9426020714.0,47021406.0,ena RUN TAB 05 08 2022 14:25:08:840 19213,0:100.23 1:100.23,A:2487913802;C:2263414842;G:2331327650;T:2343237033;N:127387,100,100,,,2487913802,2263414842,2331327650,2343237033,127387,ERX9574493,ERS12562204,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.97197,0.97222,0.04546,0.04553,0.74235,0.7485,0.48841,0.48446,93,93,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Undetermined,Undetermined,Multi-tissue,Multi-system 11147,ERR10034088,ERX9574492,ERS12562203,ERP140005,PRJEB55122,Danio developmental transcriptomes,ca4a518e-aaf7-42d9-9758-352aac808809,Other,Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.,ENA FIRST PUBLIC:2022 08 05|ENA LAST UPDATE:2022 08 08,,Postmetamorphic posterior tissue including caudal fin from Danio rerio,Drerio postmetamorphic 1,SAMEA110464175,max planck institute for biology,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08|External Id:SAMEA110464175|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY|INSDC center name:max planck institute for biology|INSDC first public:2022 08 08T04:26:46Z|INSDC last update:2022 08 08T04:26:46Z|INSDC status:public|Submitter Id:SAMPLE41|collected by:Marco Podobnik|collection date:2018 07 16|common name:zebrafish|dev stage:Postmetamorphic|identified by:Marco Podobnik|sample name:SAMPLE41|sex:not provided|tissue type:posterior trunk including caudal fin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 05 08 2022 14:25:08:840 19210,unspecified,1,Illumina TruSeq DNA Nano Kit,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP140005,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2022 08 08|ENA LAST UPDATE:2022 08 08,S879Nr41.1.fastq.gz S879Nr41.2.fastq.gz,fastq fastq,10220995994.0,50953819.0,ena RUN TAB 05 08 2022 14:25:08:840 19211,0:100.30 1:100.30,A:2679378092;C:2474435843;G:2537496182;T:2529546220;N:139657,100,100,,,2679378092,2474435843,2537496182,2529546220,139657,ERX9574492,ERS12562203,ERA16814395,max planck institute for biology|European Nucleotide Archive,max planck institute for biology,2,0.97322,0.97339,0.05421,0.05374,0.73693,0.74194,0.50642,0.50631,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2022-08-05,Undetermined,Undetermined,Multi-tissue,Multi-system 28514,SRR26502432,SRX22206245,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish2,zebrafish AB Kidney IP TNPKLH IgZ2 Fish2,zebrafish AB Kidney IP TNPKLH IgZ2 Fish2,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish2 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_Z2_Fish2_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish2_clean_R2.fastq.gz,fastq fastq,223722000.0,372870.0,IPTNP 28d AB Ki Z2 Fish2 clean R1.fastq.gz,0:300 1:300,A:60349354;C:49977478;G:49698065;T:63696951;N:152,300,300,,,60349354,49977478,49698065,63696951,152,SRX22206245,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00039,0.56274,0.0,0.03514,0.99977,0.99977,0.13793,0.0001,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28515,SRR26502433,SRX22206244,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish2,zebrafish AB Kidney IP TNPKLH IgM Fish2,zebrafish AB Kidney IP TNPKLH IgM Fish2,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish2 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_M_Fish2_clean_R2.fastq.gz IPTNP_28d_AB_Ki_M_Fish2_clean_R1.fastq.gz,fastq fastq,1296356400.0,2160594.0,IPTNP 28d AB Ki M Fish2 clean R1.fastq.gz,0:300 1:300,A:345599628;C:292675523;G:307032178;T:351048163;N:908,300,300,,,345599628,292675523,307032178,351048163,908,SRX22206244,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.13277,0.493,0.0,0.0538,0.99997,0.99983,0.0,0.00016,300,300,B,B,mate1-mate2 similar by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28516,SRR26502438,SRX22206239,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish6,zebrafish AB Kidney IP TNPKLH IgZ2 Fish6,zebrafish AB Kidney IP TNPKLH IgZ2 Fish6,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish6 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_Z2_Fish6_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish6_clean_R2.fastq.gz,fastq fastq,36927000.0,61545.0,IPTNP 28d AB Ki Z2 Fish6 clean R1.fastq.gz,0:300 1:300,A:10692726;C:8421425;G:7948050;T:9864799;N:0,300,300,,,10692726,8421425,7948050,9864799,0,SRX22206239,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00217,0.43144,0.00031,0.04455,0.99902,0.99926,0.46153,0.00207,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28517,SRR26502439,SRX22206238,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish6,zebrafish AB Kidney IP TNPKLH IgM Fish6,zebrafish AB Kidney IP TNPKLH IgM Fish6,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish6 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_M_Fish6_clean_R1.fastq.gz IPTNP_28d_AB_Ki_M_Fish6_clean_R2.fastq.gz,fastq fastq,579266400.0,965444.0,IPTNP 28d AB Ki M Fish6 clean R1.fastq.gz,0:300 1:300,A:155729386;C:133391465;G:134161096;T:155984401;N:52,300,300,,,155729386,133391465,134161096,155984401,52,SRX22206238,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.10691,0.50696,0.0,0.06888,0.99989,0.99975,0.00022,0.00014,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28518,SRR26502440,SRX22206237,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish5,zebrafish AB Kidney IP TNPKLH IgZ2 Fish5,zebrafish AB Kidney IP TNPKLH IgZ2 Fish5,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish5 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_Z2_Fish5_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish5_clean_R2.fastq.gz,fastq fastq,72321600.0,120536.0,IPTNP 28d AB Ki Z2 Fish5 clean R1.fastq.gz,0:300 1:300,A:20213882;C:16497376;G:15762001;T:19848333;N:8,300,300,,,20213882,16497376,15762001,19848333,8,SRX22206237,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00248,0.52445,0.00015,0.04429,0.99902,0.99918,0.13142,0.00403,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28519,SRR26502441,SRX22206236,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish5,zebrafish AB Kidney IP TNPKLH IgM Fish5,zebrafish AB Kidney IP TNPKLH IgM Fish5,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish5 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_M_Fish5_clean_R1.fastq.gz IPTNP_28d_AB_Ki_M_Fish5_clean_R2.fastq.gz,fastq fastq,627508800.0,1045848.0,IPTNP 28d AB Ki M Fish5 clean R1.fastq.gz,0:300 1:300,A:166970849;C:144788459;G:146254051;T:169495382;N:59,300,300,,,166970849,144788459,146254051,169495382,59,SRX22206236,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.14044,0.5736,0.0,0.07097,0.99997,0.99983,0.0,0.00011,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28520,SRR26502442,SRX22206235,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish4,zebrafish AB Kidney IP TNPKLH IgZ2 Fish4,zebrafish AB Kidney IP TNPKLH IgZ2 Fish4,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish4 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_Z2_Fish4_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish4_clean_R2.fastq.gz,fastq fastq,84922800.0,141538.0,IPTNP 28d AB Ki Z2 Fish4 clean R1.fastq.gz,0:300 1:300,A:24137795;C:19238356;G:18271192;T:23275452;N:5,300,300,,,24137795,19238356,18271192,23275452,5,SRX22206235,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00273,0.51115,7e-05,0.05752,0.99924,0.99939,0.14655,0.00062,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28521,SRR26502443,SRX22206234,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish4,zebrafish AB Kidney IP TNPKLH IgM Fish4,zebrafish AB Kidney IP TNPKLH IgM Fish4,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish4 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_M_Fish4_clean_R1.fastq.gz IPTNP_28d_AB_Ki_M_Fish4_clean_R2.fastq.gz,fastq fastq,538648200.0,897747.0,IPTNP 28d AB Ki M Fish4 clean R1.fastq.gz,0:300 1:300,A:144890138;C:124184645;G:124940661;T:144632730;N:26,300,300,,,144890138,124184645,124940661,144632730,26,SRX22206234,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.17776,0.53894,0.0,0.07275,0.99991,0.99975,7e-05,0.00013,300,300,B,B,mate1-mate2 similar by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28522,SRR26502444,SRX22206233,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish3,zebrafish AB Kidney IP TNPKLH IgZ2 Fish3,zebrafish AB Kidney IP TNPKLH IgZ2 Fish3,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish3 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_Z2_Fish3_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish3_clean_R2.fastq.gz,fastq fastq,130978800.0,218298.0,IPTNP 28d AB Ki Z2 Fish3 clean R1.fastq.gz,0:300 1:300,A:36642819;C:29649925;G:28560355;T:36125688;N:13,300,300,,,36642819,29649925,28560355,36125688,13,SRX22206233,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00233,0.44747,4e-05,0.05829,0.99933,0.99939,0.07443,0.00038,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28523,SRR26502445,SRX22206232,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish3,zebrafish AB Kidney IP TNPKLH IgM Fish3,zebrafish AB Kidney IP TNPKLH IgM Fish3,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish3 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_M_Fish3_clean_R1.fastq.gz IPTNP_28d_AB_Ki_M_Fish3_clean_R2.fastq.gz,fastq fastq,771168000.0,1285280.0,IPTNP 28d AB Ki M Fish3 clean R1.fastq.gz,0:300 1:300,A:208307845;C:178771404;G:179327317;T:204761363;N:71,300,300,,,208307845,178771404,179327317,204761363,71,SRX22206232,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.10754,0.46893,1e-05,0.06264,0.99993,0.99985,0.00015,7e-05,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28524,SRR26502448,SRX22206229,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the TNP KLH via IP injection: adult kidney fish1,zebrafish AB Kidney IP TNPKLH IgZ2 Fish1,zebrafish AB Kidney IP TNPKLH IgZ2 Fish1,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish1 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_Z2_Fish1_clean_R1.fastq.gz IPTNP_28d_AB_Ki_Z2_Fish1_clean_R2.fastq.gz,fastq fastq,542712000.0,904520.0,IPTNP 28d AB Ki Z2 Fish1 clean R1.fastq.gz,0:300 1:300,A:146626751;C:121353093;G:120763062;T:153968769;N:325,300,300,,,146626751,121353093,120763062,153968769,325,SRX22206229,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00068,0.42171,0.0,0.03977,0.99991,0.99987,0.0196,6e-05,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28525,SRR26502449,SRX22206228,SRS19261598,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection.,Zebrafish AB IP TNP KLH 28d,IPTNP 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish1,zebrafish AB Kidney IP TNPKLH IgM Fish1,zebrafish AB Kidney IP TNPKLH IgM Fish1,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish1 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPTNP_28d_AB_Ki_M_Fish1_clean_R1.fastq.gz IPTNP_28d_AB_Ki_M_Fish1_clean_R2.fastq.gz,fastq fastq,1346198400.0,2243664.0,IPTNP 28d AB Ki M Fish1 clean R1.fastq.gz,0:300 1:300,A:363410047;C:305388036;G:321604982;T:355794421;N:914,300,300,,,363410047,305388036,321604982,355794421,914,SRX22206228,SRS19261598,SRA1738863,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.12792,0.47382,2e-05,0.04534,0.99991,0.99981,0.00019,8e-05,300,300,B,B,mate1-mate2 similar by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28526,SRR26502105,SRX22205912,SRS19261295,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the Vibrio anguillarum via IP injection.,Zebrafish AB IP Va 28d,IPVa 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP Vibrio anguillarum|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the Vibrio anguillarum via IP injection: adult kidney fish2,zebrafish AB Kidney IP Va IgZ2 Fish2,zebrafish AB Kidney IP Va IgZ2 Fish2,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish2 kidneys were harvested 28 days post IP injected Vibrio anguillarum to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPVa_28d_AB_Ki_Z2_Fish2_clean_R1.fastq.gz IPVa_28d_AB_Ki_Z2_Fish2_clean_R2.fastq.gz,fastq fastq,148917000.0,248195.0,IPVa 28d AB Ki Z2 Fish2 clean R1.fastq.gz,0:300 1:300,A:40902871;C:33748474;G:32788902;T:41456104;N:20649,300,300,,,40902871,33748474,32788902,41456104,20649,SRX22205912,SRS19261295,SRA1738828,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00127,0.21671,4e-05,0.02384,0.99939,0.99953,0.14285,0.00065,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28527,SRR26502106,SRX22205911,SRS19261295,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the Vibrio anguillarum via IP injection.,Zebrafish AB IP Va 28d,IPVa 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP Vibrio anguillarum|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the Vibrio anguillarum via IP injection: adult kidney fish2,zebrafish AB Kidney IP Va IgM Fish2,zebrafish AB Kidney IP Va IgM Fish2,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish2 kidneys were harvested 28 days post IP injected Vibrio anguillarum to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPVa_28d_AB_Ki_M_Fish2_clean_R1.fastq.gz IPVa_28d_AB_Ki_M_Fish2_clean_R2.fastq.gz,fastq fastq,1400700000.0,2334500.0,IPVa 28d AB Ki M Fish2 clean R1.fastq.gz,0:300 1:300,A:382658780;C:319810107;G:330740047;T:367285987;N:205079,300,300,,,382658780,319810107,330740047,367285987,205079,SRX22205911,SRS19261295,SRA1738828,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.12814,0.36107,0.0,0.0523,0.99997,0.99985,0.0,0.00014,300,300,B,B,mate1-mate2 similar by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28528,SRR26502115,SRX22205902,SRS19261295,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the Vibrio anguillarum via IP injection.,Zebrafish AB IP Va 28d,IPVa 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP Vibrio anguillarum|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 at 28 days post the Vibrio anguillarum via IP injection: adult kidney fish1,zebrafish AB Kidney IP Va IgZ2 Fish1,zebrafish AB Kidney IP Va IgZ2 Fish1,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish1 kidneys were harvested 28 days post IP injected Vibrio anguillarum to construct an IgZ2 library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPVa_28d_AB_Ki_Z2_Fish1_clean_R1.fastq.gz IPVa_28d_AB_Ki_Z2_Fish1_clean_R2.fastq.gz,fastq fastq,96198600.0,160331.0,IPVa 28d AB Ki Z2 Fish1 clean R1.fastq.gz,0:300 1:300,A:26939421;C:21370857;G:21135801;T:26737674;N:14847,300,300,,,26939421,21370857,21135801,26737674,14847,SRX22205902,SRS19261295,SRA1738828,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00209,0.50064,5e-05,0.05156,0.99955,0.99969,0.06435,0.00015,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28529,SRR26502116,SRX22205901,SRS19261295,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the Vibrio anguillarum via IP injection.,Zebrafish AB IP Va 28d,IPVa 28d AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP Vibrio anguillarum|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM at 28 days post the Vibrio anguillarum via IP injection: adult kidney fish1,zebrafish AB Kidney IP Va IgM Fish1,zebrafish AB Kidney IP Va IgM Fish1,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish1 kidneys were harvested 28 days post IP injected Vibrio anguillarum to construct an IgM library.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,IPVa_28d_AB_Ki_M_Fish1_clean_R1.fastq.gz IPVa_28d_AB_Ki_M_Fish1_clean_R2.fastq.gz,fastq fastq,1208007000.0,2013345.0,IPVa 28d AB Ki M Fish1 clean R1.fastq.gz,0:300 1:300,A:333262499;C:274287635;G:285027652;T:315252859;N:176355,300,300,,,333262499,274287635,285027652,315252859,176355,SRX22205901,SRS19261295,SRA1738828,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.11556,0.31221,0.0,0.04066,0.99993,0.99985,0.00017,0.00028,300,300,B,B,mate1-mate2 similar by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-25,Adult,Adult,Multi-tissue,Multi-system 28530,SRR26488229,SRX22192101,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish4,zebrafish AB Kidney Unimmunization IgZ2 Fish4,zebrafish AB Kidney Unimmunization IgZ2 Fish4,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish4 IgZ2.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_Z2_Fish4_clean_R1.fastq.gz UI_AB_Ki_Z2_Fish4_clean_R2.fastq.gz,fastq fastq,452866800.0,754778.0,UI AB Ki Z2 Fish4 clean R1.fastq.gz,0:300 1:300,A:119823464;C:102645888;G:102371143;T:127641629;N:384676,300,300,,,119823464,102645888,102371143,127641629,384676,SRX22192101,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00081,0.39173,0.0,0.16017,0.99981,0.99979,0.04273,0.00056,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 28531,SRR26488230,SRX22192100,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM without xxx: adult kidney fish4,zebrafish AB Kidney Unimmunization IgM Fish4,zebrafish AB Kidney Unimmunization IgM Fish4,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish4 IgM.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_M_Fish4_clean_R2.fastq.gz UI_AB_Ki_M_Fish4_clean_R1.fastq.gz,fastq fastq,1175273400.0,1958789.0,UI AB Ki M Fish4 clean R1.fastq.gz,0:300 1:300,A:320768072;C:266946605;G:278763949;T:307641532;N:1153242,300,300,,,320768072,266946605,278763949,307641532,1153242,SRX22192100,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.36646,0.48405,0.0,0.0978,0.99993,0.99981,3e-05,7e-05,300,300,B,B,biological fallback assumption,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 28532,SRR26488233,SRX22192097,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish2,zebrafish AB Kidney Unimmunization IgZ2 Fish2,zebrafish AB Kidney Unimmunization IgZ2 Fish2,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish2 IgZ2.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_Z2_Fish2_clean_R2.fastq.gz UI_AB_Ki_Z2_Fish2_clean_R1.fastq.gz,fastq fastq,180337528.0,299564.0,UI AB Ki Z2 Fish2 clean R1.fastq.gz,0:301 1:301,A:50544268;C:41015792;G:40132471;T:48636308;N:8689,301,301,,,50544268,41015792,40132471,48636308,8689,SRX22192097,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00202,0.27435,0.00016,0.05953,0.99736,0.99866,0.41224,0.00434,301,301,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 28533,SRR26488236,SRX22192094,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM without xxx: adult kidney fish2,zebrafish AB Kidney Unimmunization IgM Fish2,zebrafish AB Kidney Unimmunization IgM Fish2,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish2 IgM.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_M_Fish2_clean_R1.fastq.gz UI_AB_Ki_M_Fish2_clean_R2.fastq.gz,fastq fastq,235187554.0,390677.0,UI AB Ki M Fish2 clean R1.fastq.gz,0:301 1:301,A:63276642;C:54233985;G:55195713;T:62481210;N:4,301,301,,,63276642,54233985,55195713,62481210,4,SRX22192094,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.12903,0.42746,0.0,0.0323,0.99995,0.99987,0.0,9e-05,301,301,B,B,mate1-mate2 similar by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 28534,SRR26488237,SRX22192093,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish10,zebrafish AB Kidney Unimmunization IgZ2 Fish10,zebrafish AB Kidney Unimmunization IgZ2 Fish10,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish10 IgZ2.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_Z2_Fish10_clean_R1.fastq.gz UI_AB_Ki_Z2_Fish10_clean_R2.fastq.gz,fastq fastq,187774200.0,312957.0,UI AB Ki Z2 Fish10 clean R1.fastq.gz,0:300 1:300,A:51941827;C:41824457;G:42259702;T:51589508;N:158706,300,300,,,51941827,41824457,42259702,51589508,158706,SRX22192093,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00197,0.48348,4e-05,0.02602,0.99981,0.99985,0.02049,4e-05,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 28535,SRR26488238,SRX22192092,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM without xxx: adult kidney fish10,zebrafish AB Kidney Unimmunization IgM Fish10,zebrafish AB Kidney Unimmunization IgM Fish10,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish10 IgM.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_M_Fish10_clean_R1.fastq.gz UI_AB_Ki_M_Fish10_clean_R2.fastq.gz,fastq fastq,1348929600.0,2248216.0,UI AB Ki M Fish10 clean R1.fastq.gz,0:300 1:300,A:372533980;C:296280069;G:315957178;T:362830159;N:1328214,300,300,,,372533980,296280069,315957178,362830159,1328214,SRX22192092,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.04106,0.65457,0.0,0.01839,0.99995,0.99987,0.00017,2e-05,300,300,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 28536,SRR26488247,SRX22192083,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgZ2 without xxx: adult kidney fish1,zebrafish AB Kidney Unimmunization IgZ2 Fish1,zebrafish AB Kidney Unimmunization IgZ2 Fish1,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish1 IgZ2.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_Z2_Fish1_clean_R1.fastq.gz UI_AB_Ki_Z2_Fish1_clean_R2.fastq.gz,fastq fastq,74076702.0,123051.0,UI AB Ki Z2 Fish1 clean R1.fastq.gz,0:301 1:301,A:21163846;C:16505697;G:16394698;T:20009432;N:3029,301,301,,,21163846,16505697,16394698,20009432,3029,SRX22192083,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.00345,0.35918,0.00037,0.01229,0.99797,0.99888,0.46913,0.00408,301,301,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 28537,SRR26488248,SRX22192082,SRS19248767,SRP468057,PRJNA1027976,Danio rerio BCR rep seq Raw sequence reads,PRJNA1027976,Other,A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish.,,,Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx.,Zebrafish AB Kidney Unimmunization,UI AB,,strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal,,,,,,,,,Rep Seq of zebrafish AB IgM without xxx: adult kidney fish1,zebrafish AB Kidney Unimmunization IgM Fish1,zebrafish AB Kidney Unimmunization IgM Fish1,A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish1 IgM.,,,AMPLICON,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina MiSeq,,SRP468057,,,UI_AB_Ki_M_Fish1_clean_R1.fastq.gz UI_AB_Ki_M_Fish1_clean_R2.fastq.gz,fastq fastq,237047132.0,393766.0,UI AB Ki M Fish1 clean R1.fastq.gz,0:301 1:301,A:64821499;C:55151969;G:56692025;T:60381634;N:5,301,301,,,64821499,55151969,56692025,60381634,5,SRX22192082,SRS19248767,SRA1738037,Sun Yat-sen University|School of Life Sciences,Sun Yat-sen University,2,0.11965,0.51034,0.0,0.01727,0.99995,0.99987,8e-05,2e-05,301,301,T,B,mate1 technical by mapping diff,illumina,miseq,full_length,poly_a,smarter,bulk,unknown,unknown,,China,2023-10-24,Adult,Adult,Multi-tissue,Multi-system 34478,SRR31775061,SRX27136707,SRS23592227,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,H1,,isolate:h3|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453370a,M2453370a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,H1_1.fq.gz H1_2.fq.gz,fastq fastq,6319950000.0,21066500.0,H1 1.fq.gz,0:150 1:150,A:1579545249;C:1572521459;G:1603986621;T:1563887862;N:8809,150,150,,,1579545249,1572521459,1603986621,1563887862,8809,SRX27136707,SRS23592227,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34479,SRR31775062,SRX27136706,SRS23592225,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,H3,,isolate:h2|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453372a,M2453372a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,H3_1.fq.gz H3_2.fq.gz,fastq fastq,7897542000.0,26325140.0,H3 1.fq.gz,0:150 1:150,A:1993598421;C:1947040540;G:1980445760;T:1976446518;N:10761,150,150,,,1993598421,1947040540,1980445760,1976446518,10761,SRX27136706,SRS23592225,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34480,SRR31775063,SRX27136705,SRS23592226,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,H2,,isolate:h1|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453371a,M2453371a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,H2_1.fq.gz H2_2.fq.gz,fastq fastq,8183640600.0,27278802.0,H2 1.fq.gz,0:150 1:150,A:2062467129;C:2021569539;G:2054847883;T:2044744640;N:11409,150,150,,,2062467129,2021569539,2054847883,2044744640,11409,SRX27136705,SRS23592226,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34481,SRR31775064,SRX27136704,SRS23592224,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,M1,,isolate:m3|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453367a,M2453367a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,M1_1.fq.gz M1_2.fq.gz,fastq fastq,7036138800.0,23453796.0,M1 1.fq.gz,0:150 1:150,A:1769017446;C:1746262556;G:1776322430;T:1744526507;N:9861,150,150,,,1769017446,1746262556,1776322430,1744526507,9861,SRX27136704,SRS23592224,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34482,SRR31775065,SRX27136703,SRS23592222,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,M3,,isolate:m2|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453369a,M2453369a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,M3_1.fq.gz M3_2.fq.gz,fastq fastq,7846851600.0,26156172.0,M3 1.fq.gz,0:150 1:150,A:1987433338;C:1933139312;G:1962322370;T:1963945611;N:10969,150,150,,,1987433338,1933139312,1962322370,1963945611,10969,SRX27136703,SRS23592222,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34483,SRR31775066,SRX27136702,SRS23592223,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,M2,,isolate:m1|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453368a,M2453368a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,M2_1.fq.gz M2_2.fq.gz,fastq fastq,8108176200.0,27027254.0,M2 1.fq.gz,0:150 1:150,A:2075904776;C:1976612232;G:2005348891;T:2050298835;N:11466,150,150,,,2075904776,1976612232,2005348891,2050298835,11466,SRX27136702,SRS23592223,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34484,SRR31775067,SRX27136701,SRS23592221,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,control1,,isolate:c3|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453364a,M2453364a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,control1_1.fq.gz control1_2.fq.gz,fastq fastq,6948648900.0,23162163.0,control1 1.fq.gz,0:150 1:150,A:1765461044;C:1704648908;G:1731729568;T:1746697305;N:112075,150,150,,,1765461044,1704648908,1731729568,1746697305,112075,SRX27136701,SRS23592221,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34485,SRR31775068,SRX27136700,SRS23592219,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,contro3,,isolate:c2|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453366a,M2453366a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,contro3_1.fq.gz contro3_2.fq.gz,fastq fastq,8131076400.0,27103588.0,contro3 1.fq.gz,0:150 1:150,A:2064852011;C:1996504946;G:2027217738;T:2042374633;N:127072,150,150,,,2064852011,1996504946,2027217738,2042374633,127072,SRX27136700,SRS23592219,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 34486,SRR31775069,SRX27136699,SRS23592220,SRP552578,PRJNA1200306,Efficacy and mechanism of Ganoderma lucidum polysaccharides on zebrafish tail fin regeneration,PRJNA1200306,Other,The polysaccharide of Ganoderma lucidum is the main active ingredient in Ganoderma lucidum which has antioxidant activity immune enhancing activity and cell protection. However for regeneration studies Ganoderma lucidum polysaccharide mainly focuses on phenotypic changes and corresponding oxidative stress detection and lacks a systematic explanation of the mechanism of action. The purpose of this study was to explore the effect of purified polysaccharide of Ganoderma lucidum GLP 1 on the regeneration of the caudal fin of zebrafish skin.,,,,,contro2,,isolate:c1|breed:zebrafish|age:3 months|collection date:2024 02 29|geo loc name:China:Wuhan|sex:pooled male and female|tissue:tail fin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish tail fin,M2453365a,M2453365a,Comparison of transcriptomic profiles of tail fins between untreated and treated zebrafish.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552578,,,contro2_1.fq.gz contro2_2.fq.gz,fastq fastq,8467139700.0,28223799.0,contro2 1.fq.gz,0:150 1:150,A:2153149523;C:2076693000;G:2107621919;T:2129544920;N:130338,150,150,,,2153149523,2076693000,2107621919,2129544920,130338,SRX27136699,SRS23592220,SRA2037663,State Ket Laboratory of Microbial Technology|Shandong University,State Ket Laboratory of Microbial Technology,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-19,Adult,Adult,Multi-tissue,Multi-system 67550,SRR17201124,SRX13381108,SRS11285137,SRP350317,PRJNA788011,pharyngeal arch region in zebrafish embryos at 48 hpf,PRJNA788011,Other,pharyngeal arch regions in wild type sibling and mutant zebrafish embryos at 48 hpf,,,,,homo 48h2,,strain:Tubingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:48 hpf stage:not applicable|sex:not determined|tissue:pharyngeal arch|genotype:homozygotic mutant 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 48hpf homozygotic mutant pharyngeal arch 2,homo 48h2,homo 48h2,Poly A RNA is purified from 1g total RNA using Dynabeads Oligo dT25 61005 Thermo Fisher CA USA using two rounds of purification. Then the polyA RNA was fragmented into small pieces using Magnesium RNA Fragmentation Module NEB cat.e6150 USA under 94 5 7min. Then the cleaved RNA fragments were reverse transcribed to create the cDNA by SuperScript II Reverse Transcriptase Invitrogen cat. 1896649 USA which were next used to synthesise U labeled second stranded DNAs with E. coli DNA polymerase I NEB cat.m0209 USA RNase H NEB cat.m0297 USA and dUTP Solution Thermo Fisher cat.R0133 USA. An A base is then added to the blunt ends of each strand preparing them for ligation to the indexed adapters. Each adapter contains a T base overhang for ligating the adapter to the A tailed fragmented DNA. Single or dual index adapters are ligated to the fragments and size selection was performed with AMPureXP beads. post the heat labile UDG enzyme NEB cat.m0280 USA treatment of the U labeled second stranded DNAs the ligated products are amplified with PCR by the following conditions: initial denaturation at 95 for 3 min; 8 cycles of denaturation at 98 for 15 sec annealing at 60 for 15 sec and extension at 72 for 30 sec; and then final extension at 72 for 5 min. The average insert size for the final cDNA library was 30050 bp.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350317,,,homo_48h2_Clean_Data1.fq.gz homo_48h2_Clean_Data2.fq.gz,fastq fastq,5736708800.0,20741445.0,homo 48h2 Clean Data1.fq.gz,0:138.30 1:138.28,A:1509851615;C:1356120916;G:1368270971;T:1502443004;N:22294,138,138,,,1509851615,1356120916,1368270971,1502443004,22294,SRX13381108,SRS11285137,SRA1341839,Ocean University of China|School of Medicine and Pharmacy,Ocean University of China,2,0.95037,0.95325,0.06985,0.06953,0.68763,0.68678,0.47361,0.46423,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-11,Hatching,Embryo,Pharyngeal Arch,Multi-system 67551,SRR17201125,SRX13381107,SRS11285136,SRP350317,PRJNA788011,pharyngeal arch region in zebrafish embryos at 48 hpf,PRJNA788011,Other,pharyngeal arch regions in wild type sibling and mutant zebrafish embryos at 48 hpf,,,,,homo 48h1,,strain:Tubingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:48 hpf stage:not applicable|sex:not determined|tissue:pharyngeal arch|genotype:homozygotic mutant 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 48hpf homozygotic mutant pharyngeal arch 1,homo 48h1,homo 48h1,Poly A RNA is purified from 1g total RNA using Dynabeads Oligo dT25 61005 Thermo Fisher CA USA using two rounds of purification. Then the polyA RNA was fragmented into small pieces using Magnesium RNA Fragmentation Module NEB cat.e6150 USA under 94 5 7min. Then the cleaved RNA fragments were reverse transcribed to create the cDNA by SuperScript II Reverse Transcriptase Invitrogen cat. 1896649 USA which were next used to synthesise U labeled second stranded DNAs with E. coli DNA polymerase I NEB cat.m0209 USA RNase H NEB cat.m0297 USA and dUTP Solution Thermo Fisher cat.R0133 USA. An A base is then added to the blunt ends of each strand preparing them for ligation to the indexed adapters. Each adapter contains a T base overhang for ligating the adapter to the A tailed fragmented DNA. Single or dual index adapters are ligated to the fragments and size selection was performed with AMPureXP beads. post the heat labile UDG enzyme NEB cat.m0280 USA treatment of the U labeled second stranded DNAs the ligated products are amplified with PCR by the following conditions: initial denaturation at 95 for 3 min; 8 cycles of denaturation at 98 for 15 sec annealing at 60 for 15 sec and extension at 72 for 30 sec; and then final extension at 72 for 5 min. The average insert size for the final cDNA library was 30050 bp.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350317,,,homo_48h1_Clean_Data1.fq.gz homo_48h1_Clean_Data2.fq.gz,fastq fastq,6066639719.0,21885656.0,homo 48h1 Clean Data1.fq.gz,0:138.61 1:138.59,A:1589936586;C:1439665676;G:1452172800;T:1584841034;N:23623,138,138,,,1589936586,1439665676,1452172800,1584841034,23623,SRX13381107,SRS11285136,SRA1341839,Ocean University of China|School of Medicine and Pharmacy,Ocean University of China,2,0.95081,0.95275,0.07088,0.07055,0.68357,0.68355,0.45424,0.45004,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-11,Hatching,Embryo,Pharyngeal Arch,Multi-system 67552,SRR17201126,SRX13381106,SRS11285135,SRP350317,PRJNA788011,pharyngeal arch region in zebrafish embryos at 48 hpf,PRJNA788011,Other,pharyngeal arch regions in wild type sibling and mutant zebrafish embryos at 48 hpf,,,,,WT 48h2,,strain:Tubingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:48 hpf stage:not applicable|sex:not determined|tissue:pharyngeal arch|genotype:wild type 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 48hpf wt pharyngeal arch 2,WT 48h2,WT 48h2,Poly A RNA is purified from 1g total RNA using Dynabeads Oligo dT25 61005 Thermo Fisher CA USA using two rounds of purification. Then the polyA RNA was fragmented into small pieces using Magnesium RNA Fragmentation Module NEB cat.e6150 USA under 94 5 7min. Then the cleaved RNA fragments were reverse transcribed to create the cDNA by SuperScript II Reverse Transcriptase Invitrogen cat. 1896649 USA which were next used to synthesise U labeled second stranded DNAs with E. coli DNA polymerase I NEB cat.m0209 USA RNase H NEB cat.m0297 USA and dUTP Solution Thermo Fisher cat.R0133 USA. An A base is then added to the blunt ends of each strand preparing them for ligation to the indexed adapters. Each adapter contains a T base overhang for ligating the adapter to the A tailed fragmented DNA. Single or dual index adapters are ligated to the fragments and size selection was performed with AMPureXP beads. post the heat labile UDG enzyme NEB cat.m0280 USA treatment of the U labeled second stranded DNAs the ligated products are amplified with PCR by the following conditions: initial denaturation at 95 for 3 min; 8 cycles of denaturation at 98 for 15 sec annealing at 60 for 15 sec and extension at 72 for 30 sec; and then final extension at 72 for 5 min. The average insert size for the final cDNA library was 30050 bp.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350317,,,WT_48h2_Clean_Data1.fq.gz WT_48h2_Clean_Data2.fq.gz,fastq fastq,6235089330.0,22675108.0,WT 48h2 Clean Data1.fq.gz,0:137.49 1:137.48,A:1652157697;C:1463853803;G:1478688188;T:1640365014;N:24628,137,137,,,1652157697,1463853803,1478688188,1640365014,24628,SRX13381106,SRS11285135,SRA1341839,Ocean University of China|School of Medicine and Pharmacy,Ocean University of China,2,0.94927,0.95075,0.0714,0.07087,0.69073,0.69035,0.47367,0.47498,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-11,Hatching,Embryo,Pharyngeal Arch,Multi-system 67553,SRR17201127,SRX13381105,SRS11285134,SRP350317,PRJNA788011,pharyngeal arch region in zebrafish embryos at 48 hpf,PRJNA788011,Other,pharyngeal arch regions in wild type sibling and mutant zebrafish embryos at 48 hpf,,,,,WT 48h1,,strain:Tubingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:48 hpf stage:not applicable|sex:not determined|tissue:pharyngeal arch|genotype:wild type 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 48hpf wt pharyngeal arch 1,WT 48h1,WT 48h1,Poly A RNA is purified from 1g total RNA using Dynabeads Oligo dT25 61005 Thermo Fisher CA USA using two rounds of purification. Then the polyA RNA was fragmented into small pieces using Magnesium RNA Fragmentation Module NEB cat.e6150 USA under 94 5 7min. Then the cleaved RNA fragments were reverse transcribed to create the cDNA by SuperScript II Reverse Transcriptase Invitrogen cat. 1896649 USA which were next used to synthesise U labeled second stranded DNAs with E. coli DNA polymerase I NEB cat.m0209 USA RNase H NEB cat.m0297 USA and dUTP Solution Thermo Fisher cat.R0133 USA. An A base is then added to the blunt ends of each strand preparing them for ligation to the indexed adapters. Each adapter contains a T base overhang for ligating the adapter to the A tailed fragmented DNA. Single or dual index adapters are ligated to the fragments and size selection was performed with AMPureXP beads. post the heat labile UDG enzyme NEB cat.m0280 USA treatment of the U labeled second stranded DNAs the ligated products are amplified with PCR by the following conditions: initial denaturation at 95 for 3 min; 8 cycles of denaturation at 98 for 15 sec annealing at 60 for 15 sec and extension at 72 for 30 sec; and then final extension at 72 for 5 min. The average insert size for the final cDNA library was 30050 bp.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350317,,,WT_48h1_Clean_Data1.fq.gz WT_48h1_Clean_Data2.fq.gz,fastq fastq,6015762217.0,21777982.0,WT 48h1 Clean Data1.fq.gz,0:138.12 1:138.11,A:1585826267;C:1419329854;G:1432062628;T:1578519780;N:23688,138,138,,,1585826267,1419329854,1432062628,1578519780,23688,SRX13381105,SRS11285134,SRA1341839,Ocean University of China|School of Medicine and Pharmacy,Ocean University of China,2,0.95017,0.95204,0.07598,0.07505,0.68004,0.6786,0.46827,0.46952,111,111,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-11,Hatching,Embryo,Pharyngeal Arch,Multi-system 72680,SRR23064370,SRX19017603,SRS16436920,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,NMM 3,,strain:AB|age:26 mpf of NMN fish 3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s808,s808,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,NMM3_1.fq.gz NMM3_2.fq.gz,fastq fastq,8904180000.0,29680600.0,NMM3 1.fq.gz,0:150 1:150,A:2371461804;C:2110712865;G:2089778260;T:2332066412;N:160659,150,150,,,2371461804,2110712865,2089778260,2332066412,160659,SRX19017603,SRS16436920,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.95751,0.95891,0.05665,0.05623,0.7484,0.74976,0.47863,0.48166,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72681,SRR23064371,SRX19017602,SRS16436919,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,NMM 2,,strain:AB|age:26 mpf of NMN fish 2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s807,s807,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,NMM2_1.fq.gz NMM2_2.fq.gz,fastq fastq,7869063000.0,26230210.0,NMM2 1.fq.gz,0:150 1:150,A:2055165607;C:1895643550;G:1896389899;T:2021720741;N:143203,150,150,,,2055165607,1895643550,1896389899,2021720741,143203,SRX19017602,SRS16436919,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.96447,0.96436,0.03558,0.03532,0.79082,0.79064,0.53621,0.50736,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72682,SRR23064372,SRX19017601,SRS16436918,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,NMM 1,,strain:AB|age:26 mpf of NMN fish 1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s806,s806,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,NMM1_1.fq.gz NMM1_2.fq.gz,fastq fastq,6029860200.0,20099534.0,NMM1 1.fq.gz,0:150 1:150,A:1611438249;C:1416338739;G:1418382118;T:1583552632;N:148462,150,150,,,1611438249,1416338739,1418382118,1583552632,148462,SRX19017601,SRS16436918,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.95468,0.954,0.04942,0.04877,0.74416,0.74377,0.54118,0.5213,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72683,SRR23064373,SRX19017600,SRS16436917,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,AMM 3,,strain:AB|age:26 mpf of Aged fish 3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s805,s805,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,AMM3_1.fq.gz AMM3_2.fq.gz,fastq fastq,8359787100.0,27865957.0,AMM3 1.fq.gz,0:150 1:150,A:2230251465;C:1970070863;G:1971651464;T:2187593854;N:219454,150,150,,,2230251465,1970070863,1971651464,2187593854,219454,SRX19017600,SRS16436917,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.96505,0.96499,0.03685,0.03675,0.78498,0.78549,0.52446,0.5199,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72684,SRR23064374,SRX19017599,SRS16436916,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,AMM 2,,strain:AB|age:26 mpf of Aged fish 2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s804,s804,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,AMM2_1.fq.gz AMM2_2.fq.gz,fastq fastq,6735295800.0,22450986.0,AMM2 1.fq.gz,0:150 1:150,A:1801909696;C:1581422282;G:1581545690;T:1770274927;N:143205,150,150,,,1801909696,1581422282,1581545690,1770274927,143205,SRX19017599,SRS16436916,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.96117,0.96099,0.04688,0.04679,0.75663,0.75712,0.50035,0.48789,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72685,SRR23064375,SRX19017598,SRS16436915,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,AMM 1,,strain:AB|age:26 mpf of Aged fish 1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s803,s803,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,AMM1_1.fq.gz AMM1_2.fq.gz,fastq fastq,6426254700.0,21420849.0,AMM1 1.fq.gz,0:150 1:150,A:1729189323;C:1499112789;G:1492736189;T:1705099588;N:116811,150,150,,,1729189323,1499112789,1492736189,1705099588,116811,SRX19017598,SRS16436915,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.96305,0.9628,0.04354,0.04337,0.7907,0.79054,0.57609,0.56457,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72686,SRR23064376,SRX19017597,SRS16436914,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,YMM 3,,strain:AB|age:4 mpf of young fish 3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s802,s802,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,YMM3_1.fq.gz YMM3_2.fq.gz,fastq fastq,8595866100.0,28652887.0,YMM3 1.fq.gz,0:150 1:150,A:2311833046;C:2006607449;G:1999855331;T:2277437662;N:132612,150,150,,,2311833046,2006607449,1999855331,2277437662,132612,SRX19017597,SRS16436914,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.95685,0.95724,0.05647,0.05605,0.76008,0.7596,0.55889,0.5592,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72687,SRR23064377,SRX19017596,SRS16436913,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,YMM 2,,strain:AB|age:4 mpf of young fish 2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s801,s801,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,YMM2_1.fq.gz YMM2_2.fq.gz,fastq fastq,7440451800.0,24801506.0,YMM2 1.fq.gz,0:150 1:150,A:1996595473;C:1742187131;G:1735647338;T:1965908392;N:113466,150,150,,,1996595473,1742187131,1735647338,1965908392,113466,SRX19017596,SRS16436913,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.95732,0.95769,0.05293,0.05286,0.76108,0.76065,0.54773,0.54892,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system 72688,SRR23064378,SRX19017595,SRS16436912,SRP417212,PRJNA923277,Danio rerio Raw sequence reads,PRJNA923277,Whole Genome Sequencing,normal RNA seq of Danio rerio male muscle,,,,,YMM 1,,strain:AB|age:4 mpf of young fish 1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of liver,s800,s800,normal RNA Seq of muscle,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP417212,,,YMM1_1.fq.gz YMM1_2.fq.gz,fastq fastq,6580551900.0,21935173.0,YMM1 1.fq.gz,0:150 1:150,A:1770628200;C:1534054358;G:1532253507;T:1743509393;N:106442,150,150,,,1770628200,1534054358,1532253507,1743509393,106442,SRX19017595,SRS16436912,SRA1573638,university of Macau|faculty of health science,university of Macau,2,0.95418,0.9547,0.06002,0.05948,0.75712,0.75643,0.5444,0.55359,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2023-01-12,Adult,Adult,Multi-tissue,Multi-system