rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
33304,SRR29927538,SRX25421512,SRS22081668,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,INL 3d rep2,MCWR 2019 000138,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:INL 3d rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury inner nuclear layer,INL 3d rep2,INL 3d rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000138_S10_L001_R1_001.fastq.gz MCWR_2019_000138_S10_L001_R2_001.fastq.gz MCWR_2019_000138_S10_L002_R1_001.fastq.gz MCWR_2019_000138_S10_L002_R2_001.fastq.gz,fastq fastq fastq fastq,12792286105.0,42489107.0,MCWR 2019 000138 S10 L001 R1 001.fastq.gz,0:150.53 1:150.54,A:3362192057;C:3017281691;G:3072735924;T:3339916027;N:160406,150,150,,,3362192057,3017281691,3072735924,3339916027,160406,SRX25421512,SRS22081668,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95023,0.94904,0.10306,0.10406,0.71167,0.71305,0.46929,0.47143,149,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33305,SRR29927539,SRX25421511,SRS22081667,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,INL 3d rep1,MCWR 2019 000137,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:INL 3d rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury inner nuclear layer,INL 3d rep1,INL 3d rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000137_S9_L001_R1_001.fastq.gz MCWR_2019_000137_S9_L001_R2_001.fastq.gz MCWR_2019_000137_S9_L002_R1_001.fastq.gz MCWR_2019_000137_S9_L002_R2_001.fastq.gz,fastq fastq fastq fastq,11290383949.0,37500632.0,MCWR 2019 000137 S9 L001 R1 001.fastq.gz,0:150.53 1:150.54,A:2978304239;C:2650227687;G:2709306614;T:2952404306;N:141103,150,150,,,2978304239,2650227687,2709306614,2952404306,141103,SRX25421511,SRS22081667,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95037,0.94915,0.09395,0.0939,0.71019,0.71143,0.47425,0.46854,151,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33306,SRR29927540,SRX25421510,SRS22081666,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,INL Control rep3,MCWR 2019 000136,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:INL Control rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive inner nuclear layer,INL Control rep3,INL Control rep3,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000136_S8_L001_R1_001.fastq.gz MCWR_2019_000136_S8_L001_R2_001.fastq.gz MCWR_2019_000136_S8_L002_R1_001.fastq.gz MCWR_2019_000136_S8_L002_R2_001.fastq.gz,fastq fastq fastq fastq,10926876847.0,36289612.0,MCWR 2019 000136 S8 L001 R1 001.fastq.gz,0:150.54 1:150.56,A:2876719537;C:2534137531;G:2628404662;T:2887478941;N:136176,150,150,,,2876719537,2534137531,2628404662,2887478941,136176,SRX25421510,SRS22081666,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.9413,0.94085,0.12465,0.12554,0.71565,0.71536,0.47866,0.47866,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33307,SRR29927541,SRX25421509,SRS22081665,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,INL Control rep2,MCWR 2019 000135,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:INL Control rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive inner nuclear layer,INL Control rep2,INL Control rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000135_S7_L001_R1_001.fastq.gz MCWR_2019_000135_S7_L001_R2_001.fastq.gz MCWR_2019_000135_S7_L002_R1_001.fastq.gz MCWR_2019_000135_S7_L002_R2_001.fastq.gz,fastq fastq fastq fastq,11015573968.0,36586451.0,MCWR 2019 000135 S7 L001 R1 001.fastq.gz,0:150.54 1:150.54,A:2922133009;C:2558945272;G:2631247657;T:2903110333;N:137697,150,150,,,2922133009,2558945272,2631247657,2903110333,137697,SRX25421509,SRS22081665,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.94458,0.94452,0.1088,0.10943,0.71167,0.71161,0.48464,0.48393,149,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33308,SRR29927542,SRX25421508,SRS22081664,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,INL Control rep1,MCWR 2019 000134,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:INL Control rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive inner nuclear layer,INL Control rep1,INL Control rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000134_S6_L001_R1_001.fastq.gz MCWR_2019_000134_S6_L001_R2_001.fastq.gz MCWR_2019_000134_S6_L002_R1_001.fastq.gz MCWR_2019_000134_S6_L002_R2_001.fastq.gz,fastq fastq fastq fastq,12065204348.0,40074475.0,MCWR 2019 000134 S6 L001 R1 001.fastq.gz,0:150.53 1:150.54,A:3229181479;C:2787700756;G:2849413410;T:3198752940;N:155763,150,150,,,3229181479,2787700756,2849413410,3198752940,155763,SRX25421508,SRS22081664,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.94249,0.94233,0.10755,0.10774,0.71427,0.71449,0.48361,0.48286,151,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33309,SRR29927543,SRX25421507,SRS22081663,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,GCL 3d rep3,MCWR 2019 000133,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:GCL 3d rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury ganglion cell layer,GCL 3d rep3,GCL 3d rep3,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000133_S5_L001_R1_001.fastq.gz MCWR_2019_000133_S5_L001_R2_001.fastq.gz MCWR_2019_000133_S5_L002_R1_001.fastq.gz MCWR_2019_000133_S5_L002_R2_001.fastq.gz,fastq fastq fastq fastq,11567455830.0,38423805.0,MCWR 2019 000133 S5 L001 R1 001.fastq.gz,0:150.52 1:150.52,A:3334076845;C:2423637444;G:2488288638;T:3321309876;N:143027,150,150,,,3334076845,2423637444,2488288638,3321309876,143027,SRX25421507,SRS22081663,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.90351,0.90273,0.20071,0.20036,0.7443,0.74588,0.57805,0.58483,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33310,SRR29927544,SRX25421506,SRS22081662,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,GCL 3d rep2,MCWR 2019 000132,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:GCL 3d rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury ganglion cell layer,GCL 3d rep2,GCL 3d rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000132_S4_L001_R1_001.fastq.gz MCWR_2019_000132_S4_L001_R2_001.fastq.gz MCWR_2019_000132_S4_L002_R1_001.fastq.gz MCWR_2019_000132_S4_L002_R2_001.fastq.gz,fastq fastq fastq fastq,9928742591.0,32979607.0,MCWR 2019 000132 S4 L001 R1 001.fastq.gz,0:150.53 1:150.53,A:2670122365;C:2289339998;G:2333968379;T:2635186637;N:125212,150,150,,,2670122365,2289339998,2333968379,2635186637,125212,SRX25421506,SRS22081662,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.94453,0.9429,0.1039,0.10476,0.72032,0.72184,0.51703,0.51652,148,149,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33313,SRR29927547,SRX25421503,SRS22081659,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,GCL 3d rep1,MCWR 2019 000131,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:GCL 3d rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury ganglion cell layer,GCL 3d rep1,GCL 3d rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000131_S3_L001_R1_001.fastq.gz MCWR_2019_000131_S3_L001_R2_001.fastq.gz MCWR_2019_000131_S3_L002_R1_001.fastq.gz MCWR_2019_000131_S3_L002_R2_001.fastq.gz,fastq fastq fastq fastq,11040747879.0,36674133.0,MCWR 2019 000131 S3 L001 R1 001.fastq.gz,0:150.52 1:150.53,A:3033865749;C:2483236067;G:2540109846;T:2983395404;N:140813,150,150,,,3033865749,2483236067,2540109846,2983395404,140813,SRX25421503,SRS22081659,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.9328,0.93075,0.12255,0.12345,0.72675,0.72949,0.52776,0.53024,150,149,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33318,SRR29927552,SRX25421498,SRS22081654,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ONL 3d rep3,MCWR 2019 000145,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:ONL 3d rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury outer nuclear layer,ONL 3d rep3,ONL 3d rep3,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000145_S16_L001_R1_001.fastq.gz MCWR_2019_000145_S16_L001_R2_001.fastq.gz MCWR_2019_000145_S16_L002_R1_001.fastq.gz MCWR_2019_000145_S16_L002_R2_001.fastq.gz,fastq fastq fastq fastq,11434401733.0,37973868.0,MCWR 2019 000145 S16 L001 R1 001.fastq.gz,0:150.56 1:150.55,A:2952068036;C:2779158705;G:2786796140;T:2916234156;N:144696,150,150,,,2952068036,2779158705,2786796140,2916234156,144696,SRX25421498,SRS22081654,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95416,0.95385,0.07766,0.07806,0.79024,0.78989,0.40138,0.42872,150,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33319,SRR29927553,SRX25421497,SRS22081653,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ONL 3d rep2,MCWR 2019 000144,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:ONL 3d rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury outer nuclear layer,ONL 3d rep2,ONL 3d rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000144_S15_L002_R2_001.fastq.gz MCWR_2019_000144_S15_L002_R1_001.fastq.gz MCWR_2019_000144_S15_L001_R2_001.fastq.gz MCWR_2019_000144_S15_L001_R1_001.fastq.gz,fastq fastq fastq fastq,10784131193.0,35816254.0,MCWR 2019 000144 S15 L001 R1 001.fastq.gz,0:150.55 1:150.55,A:2770521598;C:2622163802;G:2642603869;T:2748709177;N:132747,150,150,,,2770521598,2622163802,2642603869,2748709177,132747,SRX25421497,SRS22081653,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95823,0.9574,0.06867,0.06894,0.77055,0.77234,0.43067,0.43052,149,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33320,SRR29927554,SRX25421496,SRS22081652,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ONL 3d rep1,MCWR 2019 000143,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:ONL 3d rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 day post optic nerve injury outer nuclear layer,ONL 3d rep1,ONL 3d rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000143_S14_L001_R1_001.fastq.gz MCWR_2019_000143_S14_L001_R2_001.fastq.gz MCWR_2019_000143_S14_L002_R1_001.fastq.gz MCWR_2019_000143_S14_L002_R2_001.fastq.gz,fastq fastq fastq fastq,10414222985.0,34587231.0,MCWR 2019 000143 S14 L001 R1 001.fastq.gz,0:150.55 1:150.55,A:2640548677;C:2562227240;G:2582839755;T:2628478265;N:129048,150,150,,,2640548677,2562227240,2582839755,2628478265,129048,SRX25421496,SRS22081652,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95893,0.95898,0.06693,0.06725,0.78216,0.7833,0.41018,0.40065,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33321,SRR29927555,SRX25421495,SRS22081651,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ONL Control rep3,MCWR 2019 000142,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:ONL Control rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive outer nuclear layer,ONL Control rep3,ONL Control rep3,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000142_S13_L001_R1_001.fastq.gz MCWR_2019_000142_S13_L001_R2_001.fastq.gz MCWR_2019_000142_S13_L002_R1_001.fastq.gz MCWR_2019_000142_S13_L002_R2_001.fastq.gz,fastq fastq fastq fastq,10611460744.0,35241917.0,MCWR 2019 000142 S13 L001 R1 001.fastq.gz,0:150.55 1:150.55,A:2729659216;C:2572974863;G:2597112533;T:2711584081;N:130051,150,150,,,2729659216,2572974863,2597112533,2711584081,130051,SRX25421495,SRS22081651,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95524,0.95438,0.08233,0.08236,0.76654,0.76682,0.41657,0.41626,151,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33322,SRR29927556,SRX25421494,SRS22081650,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ONL Control rep2,MCWR 2019 000141,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:ONL Control rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive outer nuclear layer,ONL Control rep2,ONL Control rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000141_S12_L001_R1_001.fastq.gz MCWR_2019_000141_S12_L001_R2_001.fastq.gz MCWR_2019_000141_S12_L002_R1_001.fastq.gz MCWR_2019_000141_S12_L002_R2_001.fastq.gz,fastq fastq fastq fastq,12296763008.0,40838426.0,MCWR 2019 000141 S12 L001 R1 001.fastq.gz,0:150.55 1:150.55,A:3157494503;C:2976873172;G:3025100891;T:3137136259;N:158183,150,150,,,3157494503,2976873172,3025100891,3137136259,158183,SRX25421494,SRS22081650,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.9531,0.95203,0.08284,0.08254,0.76816,0.76879,0.40735,0.41583,150,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33323,SRR29927557,SRX25421493,SRS22081649,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ONL Control rep1,MCWR 2019 000140,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:ONL Control rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive outer nuclear layer,ONL Control rep1,ONL Control rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000140_S11_L001_R1_001.fastq.gz MCWR_2019_000140_S11_L001_R2_001.fastq.gz MCWR_2019_000140_S11_L002_R1_001.fastq.gz MCWR_2019_000140_S11_L002_R2_001.fastq.gz,fastq fastq fastq fastq,12797441059.0,42498374.0,MCWR 2019 000140 S11 L001 R1 001.fastq.gz,0:150.56 1:150.56,A:3214435348;C:3160301138;G:3218337754;T:3204200743;N:166076,150,150,,,3214435348,3160301138,3218337754,3204200743,166076,SRX25421493,SRS22081649,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95836,0.95804,0.0672,0.06787,0.79255,0.7933,0.37626,0.37493,149,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33324,SRR29927558,SRX25421492,SRS22081648,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,GCL Control rep2,MCWR 2019 000129,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:GCL Control rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive ganglion cell layer,GCL Control rep2,GCL Control rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000129_S2_L001_R1_001.fastq.gz MCWR_2019_000129_S2_L001_R2_001.fastq.gz MCWR_2019_000129_S2_L002_R1_001.fastq.gz MCWR_2019_000129_S2_L002_R2_001.fastq.gz,fastq fastq fastq fastq,9904585990.0,32898356.0,MCWR 2019 000129 S2 L001 R1 001.fastq.gz,0:150.53 1:150.54,A:2686769990;C:2251531625;G:2320304039;T:2645855407;N:124929,150,150,,,2686769990,2251531625,2320304039,2645855407,124929,SRX25421492,SRS22081648,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.93013,0.93029,0.10617,0.10657,0.74712,0.74757,0.56746,0.56517,150,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System
33325,SRR29927559,SRX25421491,SRS22081647,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,GCL Control rep1,MCWR 2019 000128,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:male|tissue:retina|treatment:GCL Control rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive ganglion cell layer,GCL Control rep1,GCL Control rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000128_S1_L001_R1_001.fastq.gz MCWR_2019_000128_S1_L001_R2_001.fastq.gz MCWR_2019_000128_S1_L002_R1_001.fastq.gz MCWR_2019_000128_S1_L002_R2_001.fastq.gz,fastq fastq fastq fastq,11199698460.0,37200254.0,MCWR 2019 000128 S1 L001 R1 001.fastq.gz,0:150.53 1:150.53,A:3065207886;C:2519670393;G:2596314938;T:3018365726;N:139517,150,150,,,3065207886,2519670393,2596314938,3018365726,139517,SRX25421491,SRS22081647,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.93213,0.93206,0.13073,0.13125,0.7305,0.73079,0.5518,0.55133,149,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Eye,Sensory System