rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
70706,SRR21457012,SRX17460721,SRS15014532,SRP385641,PRJNA857143,Single cell transcriptomic data of zebrafish lbw mutant,PRJNA857143,Other,Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.,,,,,Liver in the WT S4 L004,,isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:liver|aliquot:aliquot 4|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of zebrafish: 6 dpf wild type liver,Live S4 L004  aliquot 4,Live S4 L004  aliquot 4,using Chromium Single Cell three prime GEM v3.1 Reagent Kit,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP385641,,,20200806_S4_Live_20200825NB_S4_L004_I1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L004_R1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L004_R2_001.fastq.gz,fastq fastq fastq,15359722785.0,82137555.0,20200806 S4 Live 20200825NB S4 L004 I1 001.fastq.gz,0:8 1:28 2:151,A:3860252969;C:2756020453;G:2781498176;T:3004915512;N:83695,8,28,151,,3860252969,2756020453,2781498176,3004915512,83695,SRX17460721,SRS15014532,SRA1491985,Southwest University|Institute of Developmental Biology and Regenerativ,Southwest University,1,0.90519,,0.06757,,0.88243,,0.74961,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,China,2022-09-11,Larval,Larval,Liver,Liver and Biliary System
70707,SRR21457013,SRX17460720,SRS15014531,SRP385641,PRJNA857143,Single cell transcriptomic data of zebrafish lbw mutant,PRJNA857143,Other,Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.,,,,,Liver in the WT S4 L003,,isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:liver|aliquot:aliquot 3|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of zebrafish: 6 dpf wild type liver,Live S4 L003  aliquot 3,Live S4 L003  aliquot 3,using Chromium Single Cell three prime GEM v3.1 Reagent Kit,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP385641,,,20200806_S4_Live_20200825NB_S4_L003_I1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L003_R1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L003_R2_001.fastq.gz,fastq fastq fastq,15277905984.0,81700032.0,20200806 S4 Live 20200825NB S4 L003 I1 001.fastq.gz,0:8 1:28 2:151,A:3834498109;C:2745604041;G:2766967723;T:2989497144;N:137815,8,28,151,,3834498109,2745604041,2766967723,2989497144,137815,SRX17460720,SRS15014531,SRA1491985,Southwest University|Institute of Developmental Biology and Regenerativ,Southwest University,1,0.90792,,0.06795,,0.88089,,0.75291,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,China,2022-09-11,Larval,Larval,Liver,Liver and Biliary System
70710,SRR21457016,SRX17460717,SRS15014528,SRP385641,PRJNA857143,Single cell transcriptomic data of zebrafish lbw mutant,PRJNA857143,Other,Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.,,,,,Liver in the WT S4 L002,,isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:liver|aliquot:aliquot 2|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of zebrafish: 6 dpf wild type liver,Live S4 L002  aliquot 2,Live S4 L002  aliquot 2,using Chromium Single Cell three prime GEM v3.1 Reagent Kit,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP385641,,,20200806_S4_Live_20200825NB_S4_L002_I1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L002_R1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L002_R2_001.fastq.gz,fastq fastq fastq,15033903335.0,80395205.0,20200806 S4 Live 20200825NB S4 L002 I1 001.fastq.gz,0:8 1:28 2:151,A:3774023536;C:2701104584;G:2719224706;T:2945204367;N:118762,8,28,151,,3774023536,2701104584,2719224706,2945204367,118762,SRX17460717,SRS15014528,SRA1491985,Southwest University|Institute of Developmental Biology and Regenerativ,Southwest University,1,0.90993,,0.06896,,0.88002,,0.75003,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,China,2022-09-11,Larval,Larval,Liver,Liver and Biliary System
70711,SRR21457017,SRX17460716,SRS15014527,SRP385641,PRJNA857143,Single cell transcriptomic data of zebrafish lbw mutant,PRJNA857143,Other,Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine  we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine.,,,,,Liver in the WT S4 L001,,isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:liver|aliquot:aliquot 1|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of zebrafish: 6 dpf wild type liver,Live S4 L001  aliquot 1,Live S4 L001  aliquot 1,using Chromium Single Cell three prime GEM v3.1 Reagent Kit,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP385641,,,20200806_S4_Live_20200825NB_S4_L001_I1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L001_R1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L001_R2_001.fastq.gz,fastq fastq fastq,15047379303.0,80467269.0,20200806 S4 Live 20200825NB S4 L001 I1 001.fastq.gz,0:8 1:28 2:151,A:3778269770;C:2702450055;G:2724848747;T:2944890394;N:98653,8,28,151,,3778269770,2702450055,2724848747,2944890394,98653,SRX17460716,SRS15014527,SRA1491985,Southwest University|Institute of Developmental Biology and Regenerativ,Southwest University,1,0.90977,,0.06799,,0.87998,,0.75241,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,China,2022-09-11,Larval,Larval,Liver,Liver and Biliary System
75608,SRR24742192,SRX20519420,SRS17829368,SRP439656,PRJNA975724,Key factors in the process of biliary epithelial cells to bipotential progenitor cells dedifferentiation,PRJNA975724,Other,Uncover the regulatory mechanisms underlying biliary cell dedifferentiation.,,,The fish were treated with mtz at 5 dpf  and then the livers were collected post 24 hours treatment  namly regeneration 0 hour.,scRNA seq of zebrafish R0h livers,Livers of lfabp:Dendra2 NTR fish at mtz  R0h,,strain:ABGO|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:mtz  R0h|sex:pooled male and female|tissue:liver|birth location:China|collection date:2021 04 29|geo loc name:China: Chongqing|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish R0h livers,20210429 S3 R0,20210429 S3 R0,Using Chromium Single cell three prime GEM v3.1 Reagent kit,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP439656,,,R21049148-20210429-S3-R0-1_combined_R1.fastq.gz R21049148-20210429-S3-R0-1_combined_R2.fastq.gz R21049148-20210429-S3-R0-2_combined_R1.fastq.gz R21049148-20210429-S3-R0-2_combined_R2.fastq.gz R21049148-20210429-S3-R0-3_combined_R1.fastq.gz R21049148-20210429-S3-R0-3_combined_R2.fastq.gz R21049148-20210429-S3-R0-4_combined_R1.fastq.gz R21049148-20210429-S3-R0-4_combined_R2.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,108860887800.0,362869626.0,R21049148 20210429 S3 R0 1 combined R1.fastq.gz,0:150 1:150,A:46078842047;C:20145501988;G:19787836142;T:22846772612;N:1935011,150,150,,,46078842047,20145501988,19787836142,22846772612,1935011,SRX20519420,SRS17829368,SRA1643264,Institute of Developmental Biology and Regenerative Medicine|Southwest University,Institute of Developmental Biology and Regenerative Medicine AccuraMed Company,2,0.0,0.92113,0.0,0.15798,1.0,0.81215,,0.58532,150,150,T,B,mate1 technical by mapping diff,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,China,2023-05-25,Zygote,Embryo,Liver,Liver and Biliary System
75609,SRR24742193,SRX20519419,SRS17829369,SRP439656,PRJNA975724,Key factors in the process of biliary epithelial cells to bipotential progenitor cells dedifferentiation,PRJNA975724,Other,Uncover the regulatory mechanisms underlying biliary cell dedifferentiation.,,,The livers of fish were collected at 6 dpf,scRNA seq of zebrafish 6 dpf livers,Livers of lfabp:Dendra2 NTR fish at 6 dpf,,strain:ABGO|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:6 dpf|sex:pooled male and female|tissue:liver|birth location:China|collection date:2021 04 29|geo loc name:China: Chongqing|BioSampleModel:Model organism or animal,,,,,,,,,scRNA seq of zebrafish 6 dpf livers,20210429 S2 D6,20210429 S2 D6,Using Chromium Single cell three prime GEM v3.1 Reagent kit,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP439656,,,R21049147-20210429-S2-D6-1_combined_R1.fastq.gz R21049147-20210429-S2-D6-1_combined_R2.fastq.gz R21049147-20210429-S2-D6-2_combined_R1.fastq.gz R21049147-20210429-S2-D6-2_combined_R2.fastq.gz R21049147-20210429-S2-D6-3_combined_R1.fastq.gz R21049147-20210429-S2-D6-3_combined_R2.fastq.gz R21049147-20210429-S2-D6-4_combined_R1.fastq.gz R21049147-20210429-S2-D6-4_combined_R2.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,122319275400.0,407730918.0,R21049147 20210429 S2 D6 1 combined R1.fastq.gz,0:150 1:150,A:36198844657;C:27630980168;G:25561495158;T:32927451902;N:503515,150,150,,,36198844657,27630980168,25561495158,32927451902,503515,SRX20519419,SRS17829369,SRA1643264,Institute of Developmental Biology and Regenerative Medicine|Southwest University,Institute of Developmental Biology and Regenerative Medicine AccuraMed Company,2,0.00072,0.9132,0.00023,0.11357,0.99995,0.88909,0.5,0.69408,150,150,T,B,mate1 technical by mapping diff,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,China,2023-05-25,Larval,Larval,Liver,Liver and Biliary System