rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
71972,SRR22163682,SRX18142568,SRS15644032,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,C3,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:control|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,C3,C3,control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,C3.R1.fastq.gz C3.R2.fastq.gz,fastq fastq,6777299176.0,22441388.0,C3.R1.fastq.gz,0:151 1:151,A:1869146927;C:1513142912;G:1565477798;T:1829395893;N:135646,151,151,,,1869146927,1513142912,1565477798,1829395893,135646,SRX18142568,SRS15644032,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.91581,0.91452,0.09416,0.09344,0.71167,0.71338,0.50247,0.50311,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71973,SRR22163683,SRX18142567,SRS15644031,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,C2,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:control|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,C2,C2,control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,C2.R1.fastq.gz C2.R2.fastq.gz,fastq fastq,6956425644.0,23034522.0,C2.R1.fastq.gz,0:151 1:151,A:1847551873;C:1616308106;G:1662475314;T:1829952767;N:137584,151,151,,,1847551873,1616308106,1662475314,1829952767,137584,SRX18142567,SRS15644031,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93033,0.9312,0.056,0.05619,0.71261,0.71376,0.4668,0.47014,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71974,SRR22163684,SRX18142566,SRS15644030,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,C1,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:control|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,C1,C1,control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,C1.R1.fastq.gz C1.R2.fastq.gz,fastq fastq,6218689172.0,20591686.0,C1.R1.fastq.gz,0:151 1:151,A:1651743119;C:1444992966;G:1490934383;T:1630891482;N:127222,151,151,,,1651743119,1444992966,1490934383,1630891482,127222,SRX18142566,SRS15644030,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93571,0.93627,0.03427,0.0346,0.73336,0.73401,0.47064,0.47601,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71975,SRR22163685,SRX18142565,SRS15644029,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,B3,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:challenge|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,B3,B3,challenge group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,B3.R1.fastq.gz B3.R2.fastq.gz,fastq fastq,7958268062.0,26351881.0,B3.R1.fastq.gz,0:151 1:151,A:2067039750;C:1894612680;G:1943559820;T:2052891379;N:164433,151,151,,,2067039750,1894612680,1943559820,2052891379,164433,SRX18142565,SRS15644029,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93754,0.93809,0.03309,0.03347,0.71762,0.71731,0.49012,0.4888,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71976,SRR22163686,SRX18142564,SRS15644028,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,B2,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:challenge|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,B2,B2,challenge group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,B2.R1.fastq.gz B2.R2.fastq.gz,fastq fastq,7071097158.0,23414229.0,B2.R1.fastq.gz,0:151 1:151,A:1862299896;C:1658740196;G:1713471478;T:1836444697;N:140891,151,151,,,1862299896,1658740196,1713471478,1836444697,140891,SRX18142564,SRS15644028,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.94335,0.94369,0.04139,0.04172,0.80405,0.80415,0.39649,0.39674,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71977,SRR22163687,SRX18142563,SRS15644027,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,B1,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:challenge|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,B1,B1,challenge group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,B1.R1.fastq.gz B1.R2.fastq.gz,fastq fastq,7597788178.0,25158239.0,B1.R1.fastq.gz,0:151 1:151,A:1986638730;C:1797302173;G:1839273564;T:1974418679;N:155032,151,151,,,1986638730,1797302173,1839273564,1974418679,155032,SRX18142563,SRS15644027,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93891,0.93921,0.04922,0.04888,0.74552,0.74501,0.48725,0.49058,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71978,SRR22163688,SRX18142562,SRS15644026,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,A3,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:treatment|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,A3,A3,treatment group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,A3.R1.fastq.gz A3.R2.fastq.gz,fastq fastq,8674550152.0,28723676.0,A3.R1.fastq.gz,0:151 1:151,A:2234032232;C:2083164440;G:2128058461;T:2229111717;N:183302,151,151,,,2234032232,2083164440,2128058461,2229111717,183302,SRX18142562,SRS15644026,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93839,0.93828,0.01889,0.01887,0.73639,0.73724,0.48841,0.47397,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71979,SRR22163689,SRX18142561,SRS15644025,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,A2,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:treatment|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,A2,A2,treatment group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,A2.R1.fastq.gz A2.R2.fastq.gz,fastq fastq,7383660816.0,24449208.0,A2.R1.fastq.gz,0:151 1:151,A:1917884453;C:1759507724;G:1796259178;T:1909857526;N:151935,151,151,,,1917884453,1759507724,1796259178,1909857526,151935,SRX18142561,SRS15644025,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93853,0.93854,0.02662,0.02663,0.71435,0.7149,0.49509,0.49212,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System
71980,SRR22163690,SRX18142560,SRS15644024,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now  the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics  we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,A1,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:treatment|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,A1,A1,treatment group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,A1.R1.fastq.gz A1.R2.fastq.gz,fastq fastq,7734454352.0,25610776.0,A1.R1.fastq.gz,0:151 1:151,A:2031967267;C:1817027018;G:1866115793;T:2019187811;N:156463,151,151,,,2031967267,1817027018,1866115793,2019187811,156463,SRX18142560,SRS15644024,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93755,0.93728,0.03692,0.03688,0.71664,0.71693,0.48577,0.48719,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System